HEADER PROTEIN BINDING 07-JUN-23 8T33 TITLE CRYSTAL STRUCTURE OF K46 ACETYLATED GABARAP IN COMPLEX WITH THE LIR OF TITLE 2 TP53INP2/DOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: GAMMA-AMINOBUTYRIC ACID RECEPTOR-ASSOCIATED PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GABA(A) RECEPTOR-ASSOCIATED PROTEIN,MM46; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: TUMOR PROTEIN P53-INDUCIBLE NUCLEAR PROTEIN 2; COMPND 8 CHAIN: B; COMPND 9 SYNONYM: DIABETES AND OBESITY-REGULATED GENE,P53-INDUCIBLE PROTEIN U, COMPND 10 PIG-U; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: GABARAP, FLC3B, HT004; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: TP53INP2, C20ORF110, DOR, PINH; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 14 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS AUTOPHAGY, GABARAP ACETYLATION, DOR LIR, TP53INP2 LIR, PROTEIN KEYWDS 2 BINDING EXPDTA X-RAY DIFFRACTION AUTHOR M.G.H.ALI,H.M.WAHBA,N.CYR,J.G.OMICHINSKI REVDAT 2 05-JUN-24 8T33 1 JRNL REVDAT 1 22-MAY-24 8T33 0 JRNL AUTH M.G.ALI,H.M.WAHBA,S.IGELMANN,N.CYR,G.FERBEYRE,J.G.OMICHINSKI JRNL TITL STRUCTURAL AND FUNCTIONAL CHARACTERIZATION OF THE ROLE OF JRNL TITL 2 ACETYLATION ON THE INTERACTIONS OF THE HUMAN ATG8-FAMILY JRNL TITL 3 PROTEINS WITH THE AUTOPHAGY RECEPTOR TP53INP2/DOR. JRNL REF AUTOPHAGY 1 2024 JRNL REFN ESSN 1554-8635 JRNL PMID 38726830 JRNL DOI 10.1080/15548627.2024.2353443 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3260 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.87 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.390 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 39016 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.630 REMARK 3 FREE R VALUE TEST SET COUNT : 3756 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 4.7967 - 3.8079 1.00 1306 135 0.1489 0.1689 REMARK 3 2 3.8079 - 3.3267 1.00 1301 149 0.1691 0.1817 REMARK 3 3 3.3267 - 3.0226 1.00 1304 136 0.1745 0.2167 REMARK 3 4 3.0226 - 2.8060 1.00 1323 141 0.1774 0.2139 REMARK 3 5 2.8060 - 2.6406 1.00 1297 151 0.1917 0.2205 REMARK 3 6 2.6406 - 2.5083 1.00 1299 140 0.1862 0.1973 REMARK 3 7 2.5083 - 2.3992 1.00 1319 129 0.1911 0.2420 REMARK 3 8 2.3992 - 2.3068 1.00 1293 142 0.1922 0.2563 REMARK 3 9 2.3068 - 2.2272 1.00 1290 145 0.1905 0.2381 REMARK 3 10 2.2272 - 2.1576 1.00 1309 132 0.1897 0.2426 REMARK 3 11 2.1576 - 2.0959 1.00 1329 143 0.1746 0.2176 REMARK 3 12 2.0959 - 2.0407 1.00 1301 137 0.1834 0.2082 REMARK 3 13 1.9909 - 1.9457 1.00 1326 140 0.1925 0.2109 REMARK 3 14 1.9457 - 1.9043 1.00 1301 147 0.1934 0.2615 REMARK 3 15 1.9043 - 1.8662 1.00 1288 135 0.1907 0.2574 REMARK 3 16 1.8662 - 1.8309 1.00 1317 125 0.2012 0.2155 REMARK 3 17 1.8309 - 1.7982 1.00 1274 160 0.2020 0.2293 REMARK 3 18 1.7982 - 1.7678 1.00 1332 142 0.2059 0.2096 REMARK 3 19 1.7678 - 1.7392 1.00 1306 140 0.1996 0.2219 REMARK 3 20 1.7125 - 1.6873 1.00 1299 143 0.2177 0.2446 REMARK 3 21 1.6873 - 1.6635 1.00 1312 129 0.2129 0.2713 REMARK 3 22 1.6635 - 1.6411 1.00 1317 139 0.2267 0.2426 REMARK 3 23 1.6411 - 1.6197 1.00 1268 148 0.2535 0.2561 REMARK 3 24 1.6197 - 1.5995 0.97 1299 139 0.2338 0.2683 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.970 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.98 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.1969 18.3541 -7.0141 REMARK 3 T TENSOR REMARK 3 T11: 0.2015 T22: 0.4173 REMARK 3 T33: 0.2488 T12: 0.0537 REMARK 3 T13: -0.0113 T23: 0.0052 REMARK 3 L TENSOR REMARK 3 L11: 0.5806 L22: 1.9913 REMARK 3 L33: 0.7669 L12: 0.4045 REMARK 3 L13: -0.2036 L23: 0.7832 REMARK 3 S TENSOR REMARK 3 S11: -0.2920 S12: 0.2453 S13: 0.0047 REMARK 3 S21: -0.2141 S22: 0.1516 S23: 0.2556 REMARK 3 S31: -0.0694 S32: -0.3805 S33: -0.0492 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 11 THROUGH 24 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.9265 12.9829 6.1592 REMARK 3 T TENSOR REMARK 3 T11: 0.1667 T22: 0.1708 REMARK 3 T33: 0.2004 T12: 0.0585 REMARK 3 T13: 0.0915 T23: 0.0419 REMARK 3 L TENSOR REMARK 3 L11: 2.3162 L22: 2.6461 REMARK 3 L33: 2.9245 L12: -2.4475 REMARK 3 L13: 1.4801 L23: -1.6314 REMARK 3 S TENSOR REMARK 3 S11: -0.0764 S12: -0.1476 S13: -0.4531 REMARK 3 S21: 0.2676 S22: 0.3316 S23: 0.7079 REMARK 3 S31: -0.0990 S32: -0.6537 S33: 0.7711 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 25 THROUGH 35 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.6306 10.3642 -2.2218 REMARK 3 T TENSOR REMARK 3 T11: 0.1020 T22: 0.0799 REMARK 3 T33: 0.1148 T12: -0.0073 REMARK 3 T13: -0.0011 T23: -0.0002 REMARK 3 L TENSOR REMARK 3 L11: 1.0977 L22: 1.2961 REMARK 3 L33: 1.4519 L12: 0.2229 REMARK 3 L13: -1.2580 L23: -0.0824 REMARK 3 S TENSOR REMARK 3 S11: 0.0206 S12: 0.0148 S13: -0.1602 REMARK 3 S21: 0.1661 S22: 0.0467 S23: 0.0580 REMARK 3 S31: -0.0355 S32: -0.1465 S33: 0.0017 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 36 THROUGH 47 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.0471 13.4521 -18.3165 REMARK 3 T TENSOR REMARK 3 T11: 0.2028 T22: 0.2448 REMARK 3 T33: 0.2217 T12: 0.0213 REMARK 3 T13: -0.0336 T23: 0.0210 REMARK 3 L TENSOR REMARK 3 L11: 2.1110 L22: 0.8661 REMARK 3 L33: 1.7014 L12: -1.2107 REMARK 3 L13: 0.0080 L23: 0.5058 REMARK 3 S TENSOR REMARK 3 S11: -0.0622 S12: 0.4806 S13: -0.0069 REMARK 3 S21: 0.0388 S22: 0.3643 S23: 0.2981 REMARK 3 S31: -0.0409 S32: -0.7846 S33: 0.4219 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 48 THROUGH 56 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.3583 8.1554 -3.0993 REMARK 3 T TENSOR REMARK 3 T11: 0.1155 T22: 0.1089 REMARK 3 T33: 0.1156 T12: -0.0074 REMARK 3 T13: -0.0011 T23: 0.0146 REMARK 3 L TENSOR REMARK 3 L11: 0.5391 L22: 1.4377 REMARK 3 L33: 0.6278 L12: 0.0331 REMARK 3 L13: -0.4885 L23: 0.0374 REMARK 3 S TENSOR REMARK 3 S11: 0.1424 S12: -0.1558 S13: -0.0771 REMARK 3 S21: 0.1676 S22: -0.0857 S23: -0.0804 REMARK 3 S31: 0.0683 S32: 0.0169 S33: 0.0001 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 57 THROUGH 79 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.5533 10.2633 -17.4016 REMARK 3 T TENSOR REMARK 3 T11: 0.1439 T22: 0.1306 REMARK 3 T33: 0.1420 T12: 0.0010 REMARK 3 T13: 0.0106 T23: -0.0193 REMARK 3 L TENSOR REMARK 3 L11: 1.6657 L22: 1.3571 REMARK 3 L33: 1.5148 L12: 0.1681 REMARK 3 L13: -0.0866 L23: -0.5544 REMARK 3 S TENSOR REMARK 3 S11: -0.0379 S12: 0.2205 S13: -0.2550 REMARK 3 S21: -0.2212 S22: 0.0168 S23: 0.0692 REMARK 3 S31: 0.1998 S32: 0.0332 S33: -0.0001 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 80 THROUGH 90 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.2827 20.4720 -8.4955 REMARK 3 T TENSOR REMARK 3 T11: 0.1537 T22: 0.1077 REMARK 3 T33: 0.1338 T12: -0.0255 REMARK 3 T13: 0.0011 T23: -0.0067 REMARK 3 L TENSOR REMARK 3 L11: 1.0097 L22: 0.6824 REMARK 3 L33: 3.2607 L12: 0.5310 REMARK 3 L13: -0.0420 L23: -0.2203 REMARK 3 S TENSOR REMARK 3 S11: -0.0492 S12: -0.2143 S13: 0.2679 REMARK 3 S21: 0.1123 S22: -0.0213 S23: 0.0406 REMARK 3 S31: -0.5112 S32: 0.0338 S33: 0.0712 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 91 THROUGH 110 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.9365 18.2435 -2.2468 REMARK 3 T TENSOR REMARK 3 T11: 0.1439 T22: 0.1086 REMARK 3 T33: 0.1113 T12: -0.0022 REMARK 3 T13: 0.0068 T23: 0.0046 REMARK 3 L TENSOR REMARK 3 L11: 0.6947 L22: 2.0431 REMARK 3 L33: 2.7375 L12: -0.8321 REMARK 3 L13: -0.5628 L23: -0.5431 REMARK 3 S TENSOR REMARK 3 S11: -0.0975 S12: -0.0613 S13: 0.1166 REMARK 3 S21: 0.2844 S22: 0.0658 S23: -0.0651 REMARK 3 S31: -0.3611 S32: 0.0224 S33: -0.0084 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 111 THROUGH 117 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.7094 24.3792 -20.1533 REMARK 3 T TENSOR REMARK 3 T11: 0.2017 T22: 0.3028 REMARK 3 T33: 0.2579 T12: 0.0510 REMARK 3 T13: 0.0096 T23: 0.0728 REMARK 3 L TENSOR REMARK 3 L11: 0.5209 L22: 3.9509 REMARK 3 L33: 2.5464 L12: 0.4332 REMARK 3 L13: -0.5224 L23: 2.0746 REMARK 3 S TENSOR REMARK 3 S11: -0.2522 S12: 0.2501 S13: 0.1499 REMARK 3 S21: -0.0488 S22: 0.2321 S23: 1.0511 REMARK 3 S31: -0.3878 S32: -0.8596 S33: -0.1952 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 34 THROUGH 41 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.9232 2.8988 -4.0560 REMARK 3 T TENSOR REMARK 3 T11: 0.1402 T22: 0.0945 REMARK 3 T33: 0.1768 T12: -0.0130 REMARK 3 T13: 0.0392 T23: 0.0121 REMARK 3 L TENSOR REMARK 3 L11: 1.5284 L22: 0.9056 REMARK 3 L33: 1.1698 L12: 0.4619 REMARK 3 L13: -0.0975 L23: 0.1937 REMARK 3 S TENSOR REMARK 3 S11: -0.1140 S12: 0.0514 S13: 0.0896 REMARK 3 S21: 0.0188 S22: 0.0085 S23: 0.1156 REMARK 3 S31: 0.1898 S32: -0.1887 S33: -0.0168 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8T33 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-JUN-23. REMARK 100 THE DEPOSITION ID IS D_1000274890. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-SEP-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08B1-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.522 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39016 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.599 REMARK 200 RESOLUTION RANGE LOW (A) : 45.870 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.9400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10 % W/V PEG 3000, 0.2 M ZINC ACETATE REMARK 280 DIHYDRATE, 0.1 M SODIUM ACETATE PH 4.5, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 31.98350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 31.98350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 26.74400 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 44.58900 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 26.74400 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 44.58900 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 31.98350 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 26.74400 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 44.58900 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 31.98350 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 26.74400 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 44.58900 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2560 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7470 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -219.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 310 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 463 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 485 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 486 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 114 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 GLY B 29 REMARK 465 SER B 30 REMARK 465 GLU B 31 REMARK 465 VAL B 32 REMARK 465 ASP B 33 REMARK 465 ASP B 42 REMARK 465 SER B 43 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 381 O HOH A 420 1.82 REMARK 500 OE2 GLU A 8 O HOH A 301 1.91 REMARK 500 O HOH A 369 O HOH A 441 1.96 REMARK 500 OE2 GLU A 12 O HOH A 302 2.04 REMARK 500 O HOH A 309 O HOH A 340 2.11 REMARK 500 O HOH A 383 O HOH A 423 2.13 REMARK 500 O PRO B 41 O HOH B 101 2.15 REMARK 500 O HOH A 441 O HOH A 464 2.19 REMARK 500 OE1 GLU A 17 O HOH A 303 2.19 REMARK 500 O HOH A 307 O HOH B 111 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 469 O HOH A 483 3654 1.95 REMARK 500 O HOH A 386 O HOH A 477 6554 2.01 REMARK 500 O HOH A 364 O HOH A 422 4555 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 485 DISTANCE = 5.92 ANGSTROMS REMARK 525 HOH A 486 DISTANCE = 6.38 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 208 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 8 OE2 REMARK 620 2 ASP A 43 OD2 126.3 REMARK 620 3 HOH A 304 O 91.8 137.6 REMARK 620 4 HOH A 390 O 90.3 47.8 165.8 REMARK 620 5 HOH A 416 O 124.9 53.4 91.4 98.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 204 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 9 NE2 REMARK 620 2 HOH A 413 O 102.9 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 12 OE1 REMARK 620 2 GLU A 97 OE1 82.3 REMARK 620 3 ACT A 210 OXT 83.9 6.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 206 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 12 OE1 REMARK 620 2 GLU A 12 OE2 58.1 REMARK 620 3 GLU A 97 OE1 57.6 110.8 REMARK 620 4 HIS A 98 NE2 62.9 116.3 5.6 REMARK 620 5 ACT A 210 OXT 63.3 114.6 6.4 4.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 205 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 54 OD1 REMARK 620 2 HOH A 372 O 84.3 REMARK 620 3 HOH A 437 O 116.5 114.9 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 209 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 69 ND1 REMARK 620 2 HOH A 382 O 103.8 REMARK 620 3 HOH A 426 O 115.6 139.0 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 203 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 99 NE2 REMARK 620 2 GLU A 112 OE1 19.5 REMARK 620 3 GLU A 112 OE2 15.6 4.0 REMARK 620 4 LEU A 117 O 17.6 4.8 4.9 REMARK 620 5 HOH A 400 O 99.2 81.3 84.8 85.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 202 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 101 OE2 REMARK 620 2 HOH A 305 O 83.0 REMARK 620 3 HOH A 335 O 170.4 105.9 REMARK 620 4 HOH A 412 O 92.2 146.2 78.4 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8T2L RELATED DB: PDB REMARK 900 RELATED ID: 8T2M RELATED DB: PDB REMARK 900 RELATED ID: 8T2N RELATED DB: PDB DBREF 8T33 A 1 117 UNP O95166 GBRAP_HUMAN 1 117 DBREF 8T33 B 31 43 UNP Q8IXH6 T53I2_HUMAN 31 43 SEQADV 8T33 GLY A -1 UNP O95166 EXPRESSION TAG SEQADV 8T33 SER A 0 UNP O95166 EXPRESSION TAG SEQADV 8T33 GLY B 29 UNP Q8IXH6 EXPRESSION TAG SEQADV 8T33 SER B 30 UNP Q8IXH6 EXPRESSION TAG SEQRES 1 A 119 GLY SER MET LYS PHE VAL TYR LYS GLU GLU HIS PRO PHE SEQRES 2 A 119 GLU LYS ARG ARG SER GLU GLY GLU LYS ILE ARG LYS LYS SEQRES 3 A 119 TYR PRO ASP ARG VAL PRO VAL ILE VAL GLU LYS ALA PRO SEQRES 4 A 119 LYS ALA ARG ILE GLY ASP LEU ASP ALY LYS LYS TYR LEU SEQRES 5 A 119 VAL PRO SER ASP LEU THR VAL GLY GLN PHE TYR PHE LEU SEQRES 6 A 119 ILE ARG LYS ARG ILE HIS LEU ARG ALA GLU ASP ALA LEU SEQRES 7 A 119 PHE PHE PHE VAL ASN ASN VAL ILE PRO PRO THR SER ALA SEQRES 8 A 119 THR MET GLY GLN LEU TYR GLN GLU HIS HIS GLU GLU ASP SEQRES 9 A 119 PHE PHE LEU TYR ILE ALA TYR SER ASP GLU SER VAL TYR SEQRES 10 A 119 GLY LEU SEQRES 1 B 15 GLY SER GLU VAL ASP GLY TRP LEU ILE ILE ASP LEU PRO SEQRES 2 B 15 ASP SER MODRES 8T33 ALY A 46 LYS MODIFIED RESIDUE HET ALY A 46 12 HET ZN A 201 1 HET ZN A 202 1 HET ZN A 203 1 HET ZN A 204 1 HET ZN A 205 1 HET ZN A 206 1 HET ZN A 207 1 HET ZN A 208 1 HET ZN A 209 1 HET ACT A 210 4 HET ACT A 211 4 HET ACT A 212 4 HET ACT A 213 4 HETNAM ALY N(6)-ACETYLLYSINE HETNAM ZN ZINC ION HETNAM ACT ACETATE ION FORMUL 1 ALY C8 H16 N2 O3 FORMUL 3 ZN 9(ZN 2+) FORMUL 12 ACT 4(C2 H3 O2 1-) FORMUL 16 HOH *200(H2 O) HELIX 1 AA1 PHE A 3 HIS A 9 1 7 HELIX 2 AA2 PRO A 10 TYR A 25 1 16 HELIX 3 AA3 THR A 56 HIS A 69 1 14 HELIX 4 AA4 THR A 90 HIS A 99 1 10 SHEET 1 AA1 5 PHE A 77 PHE A 79 0 SHEET 2 AA1 5 LEU A 105 SER A 110 -1 O ALA A 108 N PHE A 79 SHEET 3 AA1 5 ARG A 28 LYS A 35 1 N ILE A 32 O LEU A 105 SHEET 4 AA1 5 LYS A 48 PRO A 52 -1 O TYR A 49 N VAL A 31 SHEET 5 AA1 5 LEU B 36 ILE B 37 1 O LEU B 36 N LEU A 50 LINK OE2 GLU A 19 CH3 ACT A 211 1555 1555 1.38 LINK C ASP A 45 N ALY A 46 1555 1555 1.33 LINK C ALY A 46 N LYS A 47 1555 1555 1.33 LINK OE2 GLU A 8 ZN ZN A 208 1555 1555 1.84 LINK NE2 HIS A 9 ZN ZN A 204 1555 1555 2.06 LINK OE1 GLU A 12 ZN ZN A 201 1555 8455 2.24 LINK OE1 GLU A 12 ZN ZN A 206 1555 8455 2.06 LINK OE2 GLU A 12 ZN ZN A 206 1555 8455 2.41 LINK OD2 ASP A 43 ZN ZN A 208 1555 3554 1.96 LINK OD1 ASP A 54 ZN ZN A 205 1555 1555 2.05 LINK ND1 HIS A 69 ZN ZN A 209 1555 1555 2.07 LINK OE1 GLU A 97 ZN ZN A 201 1555 1555 2.04 LINK OE1 GLU A 97 ZN ZN A 206 1555 1555 1.84 LINK NE2 HIS A 98 ZN ZN A 206 1555 1555 2.34 LINK NE2 HIS A 99 ZN ZN A 203 1555 1555 2.02 LINK OE2 GLU A 101 ZN ZN A 202 1555 1555 2.27 LINK OE1 GLU A 112 ZN ZN A 203 1555 6554 2.45 LINK OE2 GLU A 112 ZN ZN A 203 1555 6554 2.00 LINK O LEU A 117 ZN ZN A 203 1555 6554 2.52 LINK ZN ZN A 201 OXT ACT A 210 1555 1555 2.00 LINK ZN ZN A 202 O HOH A 305 1555 1555 2.09 LINK ZN ZN A 202 O HOH A 335 1555 8455 2.63 LINK ZN ZN A 202 O HOH A 412 1555 1555 2.07 LINK ZN ZN A 203 O HOH A 400 1555 6555 1.94 LINK ZN ZN A 204 O HOH A 413 1555 1555 2.04 LINK ZN ZN A 205 O HOH A 372 1555 1555 2.21 LINK ZN ZN A 205 O HOH A 437 1555 1555 2.21 LINK ZN ZN A 206 OXT ACT A 210 1555 1555 2.55 LINK ZN ZN A 208 O HOH A 304 1555 3554 2.30 LINK ZN ZN A 208 O HOH A 390 1555 1555 2.29 LINK ZN ZN A 208 O HOH A 416 1555 3554 2.21 LINK ZN ZN A 209 O HOH A 382 1555 1555 2.17 LINK ZN ZN A 209 O HOH A 426 1555 1555 1.95 CRYST1 53.488 89.178 63.967 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018696 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011214 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015633 0.00000