HEADER TRANSFERASE/DNA 07-JUN-23 8T3X TITLE TNA POLYMERASE, CLOSED TERNARY COMPND MOL_ID: 1; COMPND 2 MOLECULE: 10-92, TNA POLYMERASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: ENGINEERED FROM THERMOCOCCUS KODAKARENSIS DNA COMPND 6 POLYMERASE; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: TEMPLATE; COMPND 9 CHAIN: T; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: PRIMER; COMPND 13 CHAIN: P; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOCOCCUS KODAKARENSIS; SOURCE 3 ORGANISM_TAXID: 311400; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 MOL_ID: 2; SOURCE 7 SYNTHETIC: YES; SOURCE 8 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 9 ORGANISM_TAXID: 32630; SOURCE 10 MOL_ID: 3; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 13 ORGANISM_TAXID: 32630 KEYWDS DNA POLYMERASE, TRANSFERASE, TRANSFERASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR V.MAOLA,J.CHAPUT,N.CHIM REVDAT 1 28-AUG-24 8T3X 0 JRNL AUTH V.MAOLA,E.YIK,M.HAJJAR,J.LEE,M.HOLGUIN,R.QUIJANO,K.NGUYEN, JRNL AUTH 2 K.HO,J.MEDINA,N.CHIM,J.CHAPUT JRNL TITL DIRECTED EVOLUTION OF A HIGHLY EFFICIENT TNA POLYMERASE JRNL TITL 2 ACHIEVED BY HOMOLOGOUS RECOMBINATION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.73 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.73 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.39 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 22980 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.247 REMARK 3 R VALUE (WORKING SET) : 0.242 REMARK 3 FREE R VALUE : 0.301 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.700 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.3900 - 6.5800 0.99 1627 155 0.1826 0.2400 REMARK 3 2 6.5700 - 5.2200 1.00 1534 147 0.2105 0.2569 REMARK 3 3 5.2200 - 4.5600 1.00 1534 145 0.1863 0.2464 REMARK 3 4 4.5600 - 4.1400 1.00 1518 146 0.1943 0.2460 REMARK 3 5 4.1400 - 3.8500 0.99 1479 141 0.2217 0.2874 REMARK 3 6 3.8500 - 3.6200 0.99 1494 142 0.2640 0.3193 REMARK 3 7 3.6200 - 3.4400 0.99 1489 141 0.2556 0.3336 REMARK 3 8 3.4400 - 3.2900 0.99 1477 142 0.2715 0.3319 REMARK 3 9 3.2900 - 3.1600 0.99 1477 141 0.2900 0.3526 REMARK 3 10 3.1600 - 3.0500 0.99 1467 140 0.3111 0.3596 REMARK 3 11 3.0500 - 2.9600 0.99 1478 141 0.3096 0.3598 REMARK 3 12 2.9600 - 2.8700 0.99 1481 140 0.3220 0.4287 REMARK 3 13 2.8700 - 2.8000 0.99 1469 140 0.3388 0.3876 REMARK 3 14 2.8000 - 2.7300 0.98 1456 139 0.3578 0.4235 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.417 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.552 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 42.32 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.21 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 6936 REMARK 3 ANGLE : 0.452 9481 REMARK 3 CHIRALITY : 0.039 1013 REMARK 3 PLANARITY : 0.004 1115 REMARK 3 DIHEDRAL : 17.582 1120 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID 1:748 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.859 8.266 20.492 REMARK 3 T TENSOR REMARK 3 T11: 0.3277 T22: 0.3349 REMARK 3 T33: 0.3703 T12: 0.0113 REMARK 3 T13: -0.0172 T23: 0.0231 REMARK 3 L TENSOR REMARK 3 L11: 0.4372 L22: 0.2868 REMARK 3 L33: 0.6195 L12: 0.1563 REMARK 3 L13: -0.0311 L23: 0.0827 REMARK 3 S TENSOR REMARK 3 S11: 0.0327 S12: -0.0231 S13: 0.0093 REMARK 3 S21: 0.0260 S22: -0.0034 S23: -0.0515 REMARK 3 S31: 0.0054 S32: 0.0084 S33: 0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN T AND RESID 7:21 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.229 -4.662 15.039 REMARK 3 T TENSOR REMARK 3 T11: 0.4621 T22: 0.5153 REMARK 3 T33: 0.4654 T12: 0.0755 REMARK 3 T13: -0.0497 T23: -0.0677 REMARK 3 L TENSOR REMARK 3 L11: 0.0249 L22: -0.0007 REMARK 3 L33: 0.1025 L12: -0.0005 REMARK 3 L13: 0.0478 L23: -0.0057 REMARK 3 S TENSOR REMARK 3 S11: -0.3187 S12: 0.0008 S13: -0.0493 REMARK 3 S21: 0.2910 S22: 0.2060 S23: -0.0055 REMARK 3 S31: 0.3675 S32: 0.0993 S33: 0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN P AND ( RESID 1:11 OR RESID 12:12 ) ) OR ( REMARK 3 CHAIN A AND RESID 801:801 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.599 -2.565 12.663 REMARK 3 T TENSOR REMARK 3 T11: 0.4446 T22: 0.6553 REMARK 3 T33: 0.7999 T12: 0.0835 REMARK 3 T13: -0.0500 T23: -0.0482 REMARK 3 L TENSOR REMARK 3 L11: 0.0125 L22: 0.0274 REMARK 3 L33: 0.0707 L12: 0.0062 REMARK 3 L13: -0.0125 L23: 0.0328 REMARK 3 S TENSOR REMARK 3 S11: 0.1961 S12: 0.1950 S13: -0.2699 REMARK 3 S21: -0.2364 S22: -0.0448 S23: -0.0857 REMARK 3 S31: 0.1251 S32: 0.4572 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8T3X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-JUN-23. REMARK 100 THE DEPOSITION ID IS D_1000275157. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-OCT-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23008 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.730 REMARK 200 RESOLUTION RANGE LOW (A) : 45.390 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.17730 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.3600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.73 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.83 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.97000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.58 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M LITHIUM CHLORIDE , 0.1 M HEPES REMARK 280 PH 6.5, 17.6% PEG 6000, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 38.43450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.36350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 49.76250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 55.36350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 38.43450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 49.76250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, T, P REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 CYS A 749 REMARK 465 GLY A 750 REMARK 465 TYR A 751 REMARK 465 ARG A 752 REMARK 465 LYS A 753 REMARK 465 GLU A 754 REMARK 465 ASP A 755 REMARK 465 LEU A 756 REMARK 465 ARG A 757 REMARK 465 TYR A 758 REMARK 465 GLN A 759 REMARK 465 LYS A 760 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG P 11 C3' - O3' - P ANGL. DEV. = 21.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 164 -146.40 -158.48 REMARK 500 PHE A 214 -62.10 -147.67 REMARK 500 ARG A 255 -168.35 -111.64 REMARK 500 SER A 348 -156.74 -91.26 REMARK 500 ASP A 373 -179.73 -68.76 REMARK 500 GLN A 437 -63.94 60.63 REMARK 500 TRP A 505 51.40 -91.00 REMARK 500 THR A 542 -70.53 63.94 REMARK 500 ILE A 734 -77.04 -78.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 941 DISTANCE = 6.25 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 802 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 405 OD2 REMARK 620 2 PHE A 406 O 78.3 REMARK 620 3 ASP A 543 OD2 93.9 101.8 REMARK 620 4 9O7 A 801 O2B 170.9 95.5 94.0 REMARK 620 5 9O7 A 801 O2G 76.9 76.5 170.8 95.2 REMARK 620 6 9O7 A 801 O3A 129.7 140.9 102.4 52.6 83.9 REMARK 620 N 1 2 3 4 5 DBREF 8T3X A 1 760 UNP D0VWU9 D0VWU9_THEKO 1 759 DBREF 8T3X T 7 21 PDB 8T3X 8T3X 7 21 DBREF 8T3X P 1 12 PDB 8T3X 8T3X 1 12 SEQADV 8T3X ARG A 99 UNP D0VWU9 LYS 99 ENGINEERED MUTATION SEQADV 8T3X ALA A 102 UNP D0VWU9 GLU 102 ENGINEERED MUTATION SEQADV 8T3X VAL A 107 UNP D0VWU9 ILE 107 ENGINEERED MUTATION SEQADV 8T3X ILE A 127 UNP D0VWU9 VAL 127 ENGINEERED MUTATION SEQADV 8T3X THR A 136 UNP D0VWU9 LYS 136 ENGINEERED MUTATION SEQADV 8T3X ALA A 141 UNP D0VWU9 ASP 141 ENGINEERED MUTATION SEQADV 8T3X ALA A 143 UNP D0VWU9 GLU 143 ENGINEERED MUTATION SEQADV 8T3X HIS A 147 UNP D0VWU9 GLU 147 ENGINEERED MUTATION SEQADV 8T3X LYS A 285 UNP D0VWU9 GLN 285 ENGINEERED MUTATION SEQADV 8T3X ALA A 296 UNP D0VWU9 THR 296 ENGINEERED MUTATION SEQADV 8T3X GLN A 297 UNP D0VWU9 THR 297 ENGINEERED MUTATION SEQADV 8T3X GLY A 304 UNP D0VWU9 ASN 304 ENGINEERED MUTATION SEQADV 8T3X VAL A 337 UNP D0VWU9 ILE 337 ENGINEERED MUTATION SEQADV 8T3X HIS A 339 UNP D0VWU9 GLN 339 ENGINEERED MUTATION SEQADV 8T3X PRO A 340 UNP D0VWU9 SER 340 ENGINEERED MUTATION SEQADV 8T3X TYR A 356 UNP D0VWU9 PHE 356 ENGINEERED MUTATION SEQADV 8T3X ARG A 375 UNP D0VWU9 LYS 375 ENGINEERED MUTATION SEQADV 8T3X TYR A 377 UNP D0VWU9 LEU 377 ENGINEERED MUTATION SEQADV 8T3X GLU A 378 UNP D0VWU9 ALA 378 ENGINEERED MUTATION SEQADV 8T3X LEU A 381 UNP D0VWU9 INSERTION SEQADV 8T3X GLU A 383 UNP D0VWU9 GLN 382 ENGINEERED MUTATION SEQADV 8T3X ALA A 386 UNP D0VWU9 GLU 385 ENGINEERED MUTATION SEQADV 8T3X LYS A 395 UNP D0VWU9 ARG 394 ENGINEERED MUTATION SEQADV 8T3X ARG A 466 UNP D0VWU9 LYS 465 ENGINEERED MUTATION SEQADV 8T3X VAL A 472 UNP D0VWU9 ILE 471 ENGINEERED MUTATION SEQADV 8T3X LEU A 474 UNP D0VWU9 PRO 473 ENGINEERED MUTATION SEQADV 8T3X LEU A 475 UNP D0VWU9 ILE 474 ENGINEERED MUTATION SEQADV 8T3X LYS A 477 UNP D0VWU9 ARG 476 ENGINEERED MUTATION SEQADV 8T3X ARG A 486 UNP D0VWU9 ALA 485 ENGINEERED MUTATION SEQADV 8T3X SER A 492 UNP D0VWU9 ASN 491 ENGINEERED MUTATION SEQADV 8T3X GLY A 493 UNP D0VWU9 SER 492 ENGINEERED MUTATION SEQADV 8T3X GLN A 520 UNP D0VWU9 GLU 519 ENGINEERED MUTATION SEQADV 8T3X GLU A 523 UNP D0VWU9 THR 522 ENGINEERED MUTATION SEQADV 8T3X THR A 524 UNP D0VWU9 MET 523 ENGINEERED MUTATION SEQADV 8T3X ARG A 527 UNP D0VWU9 LYS 526 ENGINEERED MUTATION SEQADV 8T3X PHE A 533 UNP D0VWU9 TYR 532 ENGINEERED MUTATION SEQADV 8T3X LEU A 538 UNP D0VWU9 ILE 537 ENGINEERED MUTATION SEQADV 8T3X ALA A 540 UNP D0VWU9 SER 539 ENGINEERED MUTATION SEQADV 8T3X PRO A 548 UNP D0VWU9 THR 547 ENGINEERED MUTATION SEQADV 8T3X HIS A 550 UNP D0VWU9 PRO 549 ENGINEERED MUTATION SEQADV 8T3X LYS A 562 UNP D0VWU9 MET 561 ENGINEERED MUTATION SEQADV 8T3X ASP A 566 UNP D0VWU9 LYS 565 ENGINEERED MUTATION SEQADV 8T3X LEU A 575 UNP D0VWU9 ALA 574 ENGINEERED MUTATION SEQADV 8T3X LYS A 585 UNP D0VWU9 GLU 584 ENGINEERED MUTATION SEQADV 8T3X ASP A 602 UNP D0VWU9 GLY 601 ENGINEERED MUTATION SEQADV 8T3X GLY A 607 UNP D0VWU9 ARG 606 ENGINEERED MUTATION SEQADV 8T3X GLY A 615 UNP D0VWU9 ASP 614 ENGINEERED MUTATION SEQADV 8T3X ARG A 672 UNP D0VWU9 LYS 671 ENGINEERED MUTATION SEQADV 8T3X SER A 717 UNP D0VWU9 PRO 716 ENGINEERED MUTATION SEQADV 8T3X ALA A 724 UNP D0VWU9 THR 723 ENGINEERED MUTATION SEQADV 8T3X PRO A 741 UNP D0VWU9 ALA 740 ENGINEERED MUTATION SEQADV 8T3X CYS A 749 UNP D0VWU9 PHE 748 ENGINEERED MUTATION SEQRES 1 A 760 MET ILE LEU ASP THR ASP TYR ILE THR GLU ASP GLY LYS SEQRES 2 A 760 PRO VAL ILE ARG ILE PHE LYS LYS GLU ASN GLY GLU PHE SEQRES 3 A 760 LYS ILE GLU TYR ASP ARG THR PHE GLU PRO TYR PHE TYR SEQRES 4 A 760 ALA LEU LEU LYS ASP ASP SER ALA ILE GLU GLU VAL LYS SEQRES 5 A 760 LYS ILE THR ALA GLU ARG HIS GLY THR VAL VAL THR VAL SEQRES 6 A 760 LYS ARG VAL GLU LYS VAL GLN LYS LYS PHE LEU GLY ARG SEQRES 7 A 760 PRO VAL GLU VAL TRP LYS LEU TYR PHE THR HIS PRO GLN SEQRES 8 A 760 ASP VAL PRO ALA ILE ARG ASP ARG ILE ARG ALA HIS PRO SEQRES 9 A 760 ALA VAL VAL ASP ILE TYR GLU TYR ASP ILE PRO PHE ALA SEQRES 10 A 760 LYS ARG TYR LEU ILE ASP LYS GLY LEU ILE PRO MET GLU SEQRES 11 A 760 GLY ASP GLU GLU LEU THR MET LEU ALA PHE ALA ILE ALA SEQRES 12 A 760 THR LEU TYR HIS GLU GLY GLU GLU PHE ALA GLU GLY PRO SEQRES 13 A 760 ILE LEU MET ILE SER TYR ALA ASP GLU GLU GLY ALA ARG SEQRES 14 A 760 VAL ILE THR TRP LYS ASN VAL ASP LEU PRO TYR VAL ASP SEQRES 15 A 760 VAL VAL SER THR GLU ARG GLU MET ILE LYS ARG PHE LEU SEQRES 16 A 760 ARG VAL VAL LYS GLU LYS ASP PRO ASP VAL LEU ILE THR SEQRES 17 A 760 TYR ASN GLY ASP ASN PHE ASP PHE ALA TYR LEU LYS LYS SEQRES 18 A 760 ARG CYS GLU LYS LEU GLY ILE ASN PHE ALA LEU GLY ARG SEQRES 19 A 760 ASP GLY SER GLU PRO LYS ILE GLN ARG MET GLY ASP ARG SEQRES 20 A 760 PHE ALA VAL GLU VAL LYS GLY ARG ILE HIS PHE ASP LEU SEQRES 21 A 760 TYR PRO VAL ILE ARG ARG THR ILE ASN LEU PRO THR TYR SEQRES 22 A 760 THR LEU GLU ALA VAL TYR GLU ALA VAL PHE GLY LYS PRO SEQRES 23 A 760 LYS GLU LYS VAL TYR ALA GLU GLU ILE ALA GLN ALA TRP SEQRES 24 A 760 GLU THR GLY GLU GLY LEU GLU ARG VAL ALA ARG TYR SER SEQRES 25 A 760 MET GLU ASP ALA LYS VAL THR TYR GLU LEU GLY LYS GLU SEQRES 26 A 760 PHE LEU PRO MET GLU ALA GLN LEU SER ARG LEU VAL GLY SEQRES 27 A 760 HIS PRO LEU TRP ASP VAL SER ARG SER SER THR GLY ASN SEQRES 28 A 760 LEU VAL GLU TRP TYR LEU LEU ARG LYS ALA TYR GLU ARG SEQRES 29 A 760 ASN GLU LEU ALA PRO ASN LYS PRO ASP GLU ARG GLU TYR SEQRES 30 A 760 GLU ARG ARG LEU ARG GLU SER TYR ALA GLY GLY TYR VAL SEQRES 31 A 760 LYS GLU PRO GLU LYS GLY LEU TRP GLU ASN ILE VAL TYR SEQRES 32 A 760 LEU ASP PHE ARG SER LEU TYR PRO SER ILE ILE ILE THR SEQRES 33 A 760 HIS ASN VAL SER PRO ASP THR LEU ASN ARG GLU GLY CYS SEQRES 34 A 760 LYS GLU TYR ASP VAL ALA PRO GLN VAL GLY HIS ARG PHE SEQRES 35 A 760 CYS LYS ASP PHE PRO GLY PHE ILE PRO SER LEU LEU GLY SEQRES 36 A 760 ASP LEU LEU GLU GLU ARG GLN LYS ILE LYS ARG LYS MET SEQRES 37 A 760 LYS ALA THR VAL ASP LEU LEU GLU LYS LYS LEU LEU ASP SEQRES 38 A 760 TYR ARG GLN ARG ARG ILE LYS ILE LEU ALA SER GLY TYR SEQRES 39 A 760 TYR GLY TYR TYR GLY TYR ALA ARG ALA ARG TRP TYR CYS SEQRES 40 A 760 LYS GLU CYS ALA GLU SER VAL THR ALA TRP GLY ARG GLN SEQRES 41 A 760 TYR ILE GLU THR THR ILE ARG GLU ILE GLU GLU LYS PHE SEQRES 42 A 760 GLY PHE LYS VAL LEU TYR ALA ASP THR ASP GLY PHE PHE SEQRES 43 A 760 ALA PRO ILE HIS GLY ALA ASP ALA GLU THR VAL LYS LYS SEQRES 44 A 760 LYS ALA LYS GLU PHE LEU ASP TYR ILE ASN ALA LYS LEU SEQRES 45 A 760 PRO GLY LEU LEU GLU LEU GLU TYR GLU GLY PHE TYR LYS SEQRES 46 A 760 ARG GLY PHE PHE VAL THR LYS LYS LYS TYR ALA VAL ILE SEQRES 47 A 760 ASP GLU GLU ASP LYS ILE THR THR GLY GLY LEU GLU ILE SEQRES 48 A 760 VAL ARG ARG GLY TRP SER GLU ILE ALA LYS GLU THR GLN SEQRES 49 A 760 ALA ARG VAL LEU GLU ALA LEU LEU LYS ASP GLY ASP VAL SEQRES 50 A 760 GLU LYS ALA VAL ARG ILE VAL LYS GLU VAL THR GLU LYS SEQRES 51 A 760 LEU SER LYS TYR GLU VAL PRO PRO GLU LYS LEU VAL ILE SEQRES 52 A 760 HIS GLU GLN ILE THR ARG ASP LEU ARG ASP TYR LYS ALA SEQRES 53 A 760 THR GLY PRO HIS VAL ALA VAL ALA LYS ARG LEU ALA ALA SEQRES 54 A 760 ARG GLY VAL LYS ILE ARG PRO GLY THR VAL ILE SER TYR SEQRES 55 A 760 ILE VAL LEU LYS GLY SER GLY ARG ILE GLY ASP ARG ALA SEQRES 56 A 760 ILE SER PHE ASP GLU PHE ASP PRO ALA LYS HIS LYS TYR SEQRES 57 A 760 ASP ALA GLU TYR TYR ILE GLU ASN GLN VAL LEU PRO PRO SEQRES 58 A 760 VAL GLU ARG ILE LEU ARG ALA CYS GLY TYR ARG LYS GLU SEQRES 59 A 760 ASP LEU ARG TYR GLN LYS SEQRES 1 T 15 DC DG DT DA DC DG DC DA DG DT DT DC DG SEQRES 2 T 15 DC DG SEQRES 1 P 12 DC DG DC DG DA DA DC DT DG DC DG YTI HET YTI P 12 18 HET 9O7 A 801 29 HET MG A 802 1 HET EPE A 803 15 HETNAM YTI (3R,5R)-5-(5-METHYL-2,4-DIOXO-3,4-DIHYDROPYRIMIDIN- HETNAM 2 YTI 1(2H)-YL)OXOLAN-3-YL DIHYDROGEN PHOSPHATE HETNAM 9O7 [(3~{S},4~{R},5~{R})-5-(6-AMINOPURIN-9-YL)-4-OXIDANYL- HETNAM 2 9O7 OXOLAN-3-YL] [OXIDANYL(PHOSPHONOOXY)PHOSPHORYL] HETNAM 3 9O7 HYDROGEN PHOSPHATE HETNAM MG MAGNESIUM ION HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETSYN EPE HEPES FORMUL 3 YTI C9 H13 N2 O7 P FORMUL 4 9O7 C9 H14 N5 O12 P3 FORMUL 5 MG MG 2+ FORMUL 6 EPE C8 H18 N2 O4 S FORMUL 7 HOH *47(H2 O) HELIX 1 AA1 ASP A 44 SER A 46 5 3 HELIX 2 AA2 ALA A 47 LYS A 52 1 6 HELIX 3 AA3 GLN A 91 ALA A 102 1 12 HELIX 4 AA4 PRO A 115 LYS A 124 1 10 HELIX 5 AA5 THR A 186 ASP A 202 1 17 HELIX 6 AA6 PHE A 214 GLY A 227 1 14 HELIX 7 AA7 LEU A 260 ILE A 268 1 9 HELIX 8 AA8 THR A 274 GLY A 284 1 11 HELIX 9 AA9 TYR A 291 GLY A 302 1 12 HELIX 10 AB1 GLY A 304 GLY A 338 1 35 HELIX 11 AB2 PRO A 340 SER A 345 1 6 HELIX 12 AB3 SER A 348 ARG A 364 1 17 HELIX 13 AB4 ASP A 373 GLU A 383 1 11 HELIX 14 AB5 SER A 408 ASN A 418 1 11 HELIX 15 AB6 GLY A 448 THR A 471 1 24 HELIX 16 AB7 ASP A 473 GLY A 499 1 27 HELIX 17 AB8 CYS A 507 LYS A 532 1 26 HELIX 18 AB9 ASP A 553 LEU A 572 1 20 HELIX 19 AC1 SER A 617 LYS A 633 1 17 HELIX 20 AC2 ASP A 636 LYS A 653 1 18 HELIX 21 AC3 PRO A 657 VAL A 662 5 6 HELIX 22 AC4 ASP A 670 TYR A 674 5 5 HELIX 23 AC5 GLY A 678 ALA A 689 1 12 HELIX 24 AC6 ARG A 710 ASP A 713 5 4 HELIX 25 AC7 ASP A 719 PHE A 721 5 3 HELIX 26 AC8 ASP A 729 ASN A 736 1 8 HELIX 27 AC9 VAL A 738 LEU A 746 1 9 SHEET 1 AA1 3 ILE A 2 GLU A 10 0 SHEET 2 AA1 3 LYS A 13 GLU A 22 -1 O VAL A 15 N ILE A 8 SHEET 3 AA1 3 GLU A 25 ASP A 31 -1 O GLU A 29 N ILE A 18 SHEET 1 AA2 4 ARG A 67 PHE A 75 0 SHEET 2 AA2 4 ARG A 78 TYR A 86 -1 O LYS A 84 N GLU A 69 SHEET 3 AA2 4 TYR A 37 LEU A 42 -1 N PHE A 38 O LEU A 85 SHEET 4 AA2 4 VAL A 106 TYR A 110 -1 O ASP A 108 N LEU A 41 SHEET 1 AA3 2 ALA A 56 ARG A 58 0 SHEET 2 AA3 2 THR A 61 VAL A 63 -1 O THR A 61 N ARG A 58 SHEET 1 AA4 6 VAL A 181 VAL A 183 0 SHEET 2 AA4 6 GLY A 167 THR A 172 1 N VAL A 170 O ASP A 182 SHEET 3 AA4 6 ILE A 157 ASP A 164 -1 N ASP A 164 O GLY A 167 SHEET 4 AA4 6 MET A 137 THR A 144 -1 N ALA A 143 O MET A 159 SHEET 5 AA4 6 VAL A 205 THR A 208 1 O ILE A 207 N PHE A 140 SHEET 6 AA4 6 ILE A 256 ASP A 259 1 O ILE A 256 N LEU A 206 SHEET 1 AA5 2 LYS A 240 MET A 244 0 SHEET 2 AA5 2 ARG A 247 GLU A 251 -1 O ALA A 249 N GLN A 242 SHEET 1 AA6 6 TYR A 539 ASP A 541 0 SHEET 2 AA6 6 GLY A 544 ALA A 547 -1 O PHE A 546 N TYR A 539 SHEET 3 AA6 6 TRP A 398 PHE A 406 -1 N LEU A 404 O PHE A 545 SHEET 4 AA6 6 LEU A 578 THR A 591 -1 O TYR A 584 N ILE A 401 SHEET 5 AA6 6 LYS A 594 ASP A 599 -1 O ALA A 596 N PHE A 588 SHEET 6 AA6 6 ILE A 604 GLY A 607 -1 O THR A 605 N VAL A 597 SHEET 1 AA7 3 ILE A 663 GLN A 666 0 SHEET 2 AA7 3 VAL A 699 VAL A 704 -1 O ILE A 700 N GLU A 665 SHEET 3 AA7 3 ALA A 715 SER A 717 -1 O ILE A 716 N ILE A 703 SSBOND 1 CYS A 429 CYS A 443 1555 1555 2.03 SSBOND 2 CYS A 507 CYS A 510 1555 1555 2.04 LINK O3' DG P 11 P YTI P 12 1555 1555 1.60 LINK OD2 ASP A 405 MG MG A 802 1555 1555 2.08 LINK O PHE A 406 MG MG A 802 1555 1555 2.39 LINK OD2 ASP A 543 MG MG A 802 1555 1555 2.01 LINK O2B 9O7 A 801 MG MG A 802 1555 1555 2.96 LINK O2G 9O7 A 801 MG MG A 802 1555 1555 2.36 LINK O3A 9O7 A 801 MG MG A 802 1555 1555 2.17 CRYST1 76.869 99.525 110.727 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013009 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010048 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009031 0.00000