HEADER PROTEIN BINDING 10-JUN-23 8T4T TITLE CRYSTAL STRUCTURE OF LC3A IN COMPLEX WITH THE LIR OF TP53INP2/DOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: TUMOR PROTEIN P53-INDUCIBLE NUCLEAR PROTEIN 2,MICROTUBULE- COMPND 3 ASSOCIATED PROTEINS 1A/1B LIGHT CHAIN 3A CHIMERA; COMPND 4 CHAIN: A, B; COMPND 5 SYNONYM: DIABETES AND OBESITY-REGULATED GENE,P53-INDUCIBLE PROTEIN U, COMPND 6 PIG-U,AUTOPHAGY-RELATED PROTEIN LC3 A,AUTOPHAGY-RELATED UBIQUITIN- COMPND 7 LIKE MODIFIER LC3 A,MAP1 LIGHT CHAIN 3-LIKE PROTEIN 1,MAP1A/MAP1B COMPND 8 LIGHT CHAIN 3 A,MAP1A/MAP1B LC3 A,MICROTUBULE-ASSOCIATED PROTEIN 1 COMPND 9 LIGHT CHAIN 3 ALPHA; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TP53INP2, C20ORF110, DOR, PINH, MAP1LC3A; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS LC3A, AUTOPHAGY, DOR LIR, TP53INP2 LIR, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR M.G.H.ALI,H.M.WAHBA,N.CYR,J.G.OMICHINSKI REVDAT 2 05-JUN-24 8T4T 1 JRNL REVDAT 1 22-MAY-24 8T4T 0 JRNL AUTH M.G.ALI,H.M.WAHBA,S.IGELMANN,N.CYR,G.FERBEYRE,J.G.OMICHINSKI JRNL TITL STRUCTURAL AND FUNCTIONAL CHARACTERIZATION OF THE ROLE OF JRNL TITL 2 ACETYLATION ON THE INTERACTIONS OF THE HUMAN ATG8-FAMILY JRNL TITL 3 PROTEINS WITH THE AUTOPHAGY RECEPTOR TP53INP2/DOR. JRNL REF AUTOPHAGY 1 2024 JRNL REFN ESSN 1554-8635 JRNL PMID 38726830 JRNL DOI 10.1080/15548627.2024.2353443 REMARK 2 REMARK 2 RESOLUTION. 2.36 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.14_3260 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.36 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.88 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 89.8 REMARK 3 NUMBER OF REFLECTIONS : 9520 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.272 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.990 REMARK 3 FREE R VALUE TEST SET COUNT : 951 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.8830 - 4.5112 1.00 1411 157 0.1535 0.2116 REMARK 3 2 4.5112 - 3.5814 1.00 1364 151 0.1725 0.2528 REMARK 3 3 3.5814 - 3.1289 0.99 1346 151 0.2376 0.3031 REMARK 3 4 3.1289 - 2.8429 0.99 1343 148 0.2645 0.3372 REMARK 3 5 2.8429 - 2.6392 0.98 1311 146 0.2924 0.3958 REMARK 3 6 2.6392 - 2.4836 0.84 1136 126 0.3376 0.3717 REMARK 3 7 2.4836 - 2.3592 0.48 658 72 0.3308 0.4221 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.440 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 35.890 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 2109 REMARK 3 ANGLE : 1.231 2846 REMARK 3 CHIRALITY : 0.063 310 REMARK 3 PLANARITY : 0.009 371 REMARK 3 DIHEDRAL : 17.406 1316 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID -5:50 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.247 -8.926 -4.838 REMARK 3 T TENSOR REMARK 3 T11: 0.5561 T22: 0.6009 REMARK 3 T33: 0.6610 T12: -0.0451 REMARK 3 T13: 0.0112 T23: 0.0004 REMARK 3 L TENSOR REMARK 3 L11: 2.8176 L22: 0.2110 REMARK 3 L33: 0.6243 L12: 0.6359 REMARK 3 L13: 1.4744 L23: 0.4097 REMARK 3 S TENSOR REMARK 3 S11: -0.0642 S12: -0.0033 S13: 0.2107 REMARK 3 S21: 0.1336 S22: 0.0670 S23: 0.1412 REMARK 3 S31: 0.0846 S32: -0.0022 S33: -0.0003 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN A AND RESID 51:70 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.735 -5.187 1.985 REMARK 3 T TENSOR REMARK 3 T11: 0.2492 T22: 0.4638 REMARK 3 T33: 0.5517 T12: -0.0368 REMARK 3 T13: -0.0140 T23: 0.0483 REMARK 3 L TENSOR REMARK 3 L11: 0.1203 L22: 4.4765 REMARK 3 L33: 3.0481 L12: -0.5078 REMARK 3 L13: -0.5773 L23: 2.9514 REMARK 3 S TENSOR REMARK 3 S11: 0.6433 S12: -0.4263 S13: 0.1741 REMARK 3 S21: -0.9846 S22: -0.1446 S23: -0.4554 REMARK 3 S31: -0.7817 S32: -0.0379 S33: 0.2586 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN A AND RESID 71:116 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.279 -12.311 5.528 REMARK 3 T TENSOR REMARK 3 T11: 0.4114 T22: 0.4596 REMARK 3 T33: 0.5264 T12: -0.0126 REMARK 3 T13: 0.0401 T23: 0.0560 REMARK 3 L TENSOR REMARK 3 L11: 0.6685 L22: 2.4061 REMARK 3 L33: 3.1711 L12: -0.8847 REMARK 3 L13: -0.3814 L23: -0.7923 REMARK 3 S TENSOR REMARK 3 S11: -0.0284 S12: -0.1683 S13: 0.1436 REMARK 3 S21: 0.7868 S22: -0.1071 S23: -0.1790 REMARK 3 S31: 0.4307 S32: 0.1648 S33: 0.0010 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN B AND RESID -10:6 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.155 -28.023 35.481 REMARK 3 T TENSOR REMARK 3 T11: 0.9478 T22: 1.1060 REMARK 3 T33: 0.5218 T12: 0.3098 REMARK 3 T13: 0.0269 T23: 0.0011 REMARK 3 L TENSOR REMARK 3 L11: 0.3613 L22: 1.7308 REMARK 3 L33: 0.2539 L12: -0.7848 REMARK 3 L13: 0.3102 L23: -0.6542 REMARK 3 S TENSOR REMARK 3 S11: 0.4213 S12: 0.4448 S13: 0.5626 REMARK 3 S21: -0.3423 S22: -0.1536 S23: -0.1914 REMARK 3 S31: -0.1011 S32: -0.5856 S33: 0.0374 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: ( CHAIN B AND RESID 7:12 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.202 -33.573 26.343 REMARK 3 T TENSOR REMARK 3 T11: 0.6655 T22: 1.0872 REMARK 3 T33: 0.6411 T12: -0.2681 REMARK 3 T13: 0.1723 T23: -0.1425 REMARK 3 L TENSOR REMARK 3 L11: 0.0222 L22: 1.1137 REMARK 3 L33: 0.1611 L12: -0.1238 REMARK 3 L13: 0.0206 L23: 0.1335 REMARK 3 S TENSOR REMARK 3 S11: -0.2445 S12: -0.0188 S13: -0.3586 REMARK 3 S21: -0.1765 S22: -0.2400 S23: -1.4160 REMARK 3 S31: -0.2257 S32: 0.5217 S33: 0.0064 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: ( CHAIN B AND RESID 13:26 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.289 -40.270 26.778 REMARK 3 T TENSOR REMARK 3 T11: 0.9091 T22: 0.6934 REMARK 3 T33: 0.8004 T12: -0.1577 REMARK 3 T13: 0.0572 T23: 0.0311 REMARK 3 L TENSOR REMARK 3 L11: 0.7812 L22: 0.3022 REMARK 3 L33: 0.7433 L12: -0.4020 REMARK 3 L13: 0.7384 L23: -0.3564 REMARK 3 S TENSOR REMARK 3 S11: 0.7356 S12: -0.7890 S13: -1.1936 REMARK 3 S21: 1.2861 S22: 0.0915 S23: 0.9376 REMARK 3 S31: 1.0664 S32: -0.8673 S33: 0.0576 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: ( CHAIN B AND RESID 27:59 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.805 -23.669 28.849 REMARK 3 T TENSOR REMARK 3 T11: 0.8006 T22: 0.7630 REMARK 3 T33: 0.5518 T12: -0.0147 REMARK 3 T13: -0.0753 T23: 0.1548 REMARK 3 L TENSOR REMARK 3 L11: 0.6174 L22: 3.0182 REMARK 3 L33: 2.4199 L12: 0.7365 REMARK 3 L13: -0.1089 L23: 2.1760 REMARK 3 S TENSOR REMARK 3 S11: -0.2508 S12: -0.2651 S13: 0.2523 REMARK 3 S21: 0.3795 S22: 0.0373 S23: 0.6375 REMARK 3 S31: -0.4799 S32: -0.3593 S33: 0.0013 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: ( CHAIN B AND RESID 60:70 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.723 -16.494 31.274 REMARK 3 T TENSOR REMARK 3 T11: 1.4382 T22: 0.7478 REMARK 3 T33: 0.9730 T12: 0.4297 REMARK 3 T13: -0.1273 T23: -0.1460 REMARK 3 L TENSOR REMARK 3 L11: 3.6081 L22: 0.3131 REMARK 3 L33: 0.7275 L12: 0.6892 REMARK 3 L13: 1.5570 L23: 0.2017 REMARK 3 S TENSOR REMARK 3 S11: 0.1908 S12: -0.8905 S13: 0.7244 REMARK 3 S21: -1.1090 S22: -0.4351 S23: 1.7479 REMARK 3 S31: -0.2462 S32: -1.3472 S33: -0.0127 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: ( CHAIN B AND RESID 71:80 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.646 -8.780 30.528 REMARK 3 T TENSOR REMARK 3 T11: 1.6200 T22: 0.7954 REMARK 3 T33: 0.7481 T12: 0.1245 REMARK 3 T13: -0.2738 T23: 0.2952 REMARK 3 L TENSOR REMARK 3 L11: 6.6075 L22: 1.1276 REMARK 3 L33: 0.5068 L12: -0.1940 REMARK 3 L13: -1.3262 L23: -0.4832 REMARK 3 S TENSOR REMARK 3 S11: 0.2742 S12: 0.5740 S13: 1.9537 REMARK 3 S21: 0.6771 S22: 0.0744 S23: -0.0124 REMARK 3 S31: -2.0583 S32: -1.0426 S33: 0.9332 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: ( CHAIN B AND RESID 81:94 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.225 -19.633 18.015 REMARK 3 T TENSOR REMARK 3 T11: 0.8692 T22: 0.7895 REMARK 3 T33: 0.8403 T12: -0.1070 REMARK 3 T13: -0.0885 T23: -0.0044 REMARK 3 L TENSOR REMARK 3 L11: 0.2332 L22: 0.5620 REMARK 3 L33: 0.4702 L12: 0.2037 REMARK 3 L13: 0.0807 L23: -0.2045 REMARK 3 S TENSOR REMARK 3 S11: -0.1566 S12: 1.7421 S13: 0.8200 REMARK 3 S21: -0.9745 S22: -0.2184 S23: 0.6252 REMARK 3 S31: -0.6063 S32: -0.4044 S33: 0.0001 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: ( CHAIN B AND RESID 95:116 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.332 -26.444 20.379 REMARK 3 T TENSOR REMARK 3 T11: 0.8843 T22: 0.6209 REMARK 3 T33: 0.6162 T12: -0.0510 REMARK 3 T13: -0.1318 T23: 0.0633 REMARK 3 L TENSOR REMARK 3 L11: 0.5704 L22: 1.5945 REMARK 3 L33: 0.6179 L12: -0.3308 REMARK 3 L13: -0.5873 L23: 0.1126 REMARK 3 S TENSOR REMARK 3 S11: -0.7250 S12: 0.8856 S13: 0.7401 REMARK 3 S21: 0.3716 S22: 0.1338 S23: 0.4559 REMARK 3 S31: -0.5169 S32: 0.0378 S33: -0.0664 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8T4T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-JUN-23. REMARK 100 THE DEPOSITION ID IS D_1000275206. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-DEC-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9618 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.359 REMARK 200 RESOLUTION RANGE LOW (A) : 39.883 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.7 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.9100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.36 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.44 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.66 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12.5% PEG3350, 0.2M NH4-CITRATE, 5% REMARK 280 ISOPROPANOL, 0.1M MES PH6.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 23.87000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -12 REMARK 465 SER A -11 REMARK 465 GLU A -10 REMARK 465 ASP A -9 REMARK 465 GLU A -8 REMARK 465 VAL A -7 REMARK 465 ASP A -6 REMARK 465 GLU A 117 REMARK 465 THR A 118 REMARK 465 PHE A 119 REMARK 465 GLY A 120 REMARK 465 PHE A 121 REMARK 465 GLY B -12 REMARK 465 SER B -11 REMARK 465 GLU B 117 REMARK 465 THR B 118 REMARK 465 PHE B 119 REMARK 465 GLY B 120 REMARK 465 PHE B 121 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ARG B 5 NH1 ARG B 10 2.03 REMARK 500 OG SER B 90 OG SER B 92 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OG SER A 3 ND2 ASN A 84 2455 1.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASN B 74 C - N - CA ANGL. DEV. = 15.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 10 -72.49 -78.94 REMARK 500 ASN A 84 -119.43 57.24 REMARK 500 HIS A 86 9.17 -155.28 REMARK 500 SER A 115 -41.43 -130.57 REMARK 500 MET B 1 76.97 -102.78 REMARK 500 PRO B 75 -7.68 -54.32 REMARK 500 ASN B 84 -123.79 54.67 REMARK 500 SER B 87 96.13 -169.61 REMARK 500 SER B 115 -72.27 -130.75 REMARK 500 REMARK 500 REMARK: NULL DBREF 8T4T A -10 0 UNP Q8IXH6 T53I2_HUMAN 29 39 DBREF 8T4T A 1 121 UNP Q9H492 MLP3A_HUMAN 1 121 DBREF 8T4T B -10 0 UNP Q8IXH6 T53I2_HUMAN 29 39 DBREF 8T4T B 1 121 UNP Q9H492 MLP3A_HUMAN 1 121 SEQADV 8T4T GLY A -12 UNP Q8IXH6 EXPRESSION TAG SEQADV 8T4T SER A -11 UNP Q8IXH6 EXPRESSION TAG SEQADV 8T4T GLY B -12 UNP Q8IXH6 EXPRESSION TAG SEQADV 8T4T SER B -11 UNP Q8IXH6 EXPRESSION TAG SEQRES 1 A 134 GLY SER GLU ASP GLU VAL ASP GLY TRP LEU ILE ILE ASP SEQRES 2 A 134 MET PRO SER ASP ARG PRO PHE LYS GLN ARG ARG SER PHE SEQRES 3 A 134 ALA ASP ARG CYS LYS GLU VAL GLN GLN ILE ARG ASP GLN SEQRES 4 A 134 HIS PRO SER LYS ILE PRO VAL ILE ILE GLU ARG TYR LYS SEQRES 5 A 134 GLY GLU LYS GLN LEU PRO VAL LEU ASP LYS THR LYS PHE SEQRES 6 A 134 LEU VAL PRO ASP HIS VAL ASN MET SER GLU LEU VAL LYS SEQRES 7 A 134 ILE ILE ARG ARG ARG LEU GLN LEU ASN PRO THR GLN ALA SEQRES 8 A 134 PHE PHE LEU LEU VAL ASN GLN HIS SER MET VAL SER VAL SEQRES 9 A 134 SER THR PRO ILE ALA ASP ILE TYR GLU GLN GLU LYS ASP SEQRES 10 A 134 GLU ASP GLY PHE LEU TYR MET VAL TYR ALA SER GLN GLU SEQRES 11 A 134 THR PHE GLY PHE SEQRES 1 B 134 GLY SER GLU ASP GLU VAL ASP GLY TRP LEU ILE ILE ASP SEQRES 2 B 134 MET PRO SER ASP ARG PRO PHE LYS GLN ARG ARG SER PHE SEQRES 3 B 134 ALA ASP ARG CYS LYS GLU VAL GLN GLN ILE ARG ASP GLN SEQRES 4 B 134 HIS PRO SER LYS ILE PRO VAL ILE ILE GLU ARG TYR LYS SEQRES 5 B 134 GLY GLU LYS GLN LEU PRO VAL LEU ASP LYS THR LYS PHE SEQRES 6 B 134 LEU VAL PRO ASP HIS VAL ASN MET SER GLU LEU VAL LYS SEQRES 7 B 134 ILE ILE ARG ARG ARG LEU GLN LEU ASN PRO THR GLN ALA SEQRES 8 B 134 PHE PHE LEU LEU VAL ASN GLN HIS SER MET VAL SER VAL SEQRES 9 B 134 SER THR PRO ILE ALA ASP ILE TYR GLU GLN GLU LYS ASP SEQRES 10 B 134 GLU ASP GLY PHE LEU TYR MET VAL TYR ALA SER GLN GLU SEQRES 11 B 134 THR PHE GLY PHE FORMUL 3 HOH *10(H2 O) HELIX 1 AA1 PRO A 6 ARG A 11 1 6 HELIX 2 AA2 SER A 12 HIS A 27 1 16 HELIX 3 AA3 ASN A 59 LEU A 71 1 13 HELIX 4 AA4 PRO A 94 LYS A 103 1 10 HELIX 5 AA5 PRO B 6 ARG B 11 1 6 HELIX 6 AA6 SER B 12 HIS B 27 1 16 HELIX 7 AA7 ASN B 59 LEU B 71 1 13 HELIX 8 AA8 PRO B 94 LYS B 103 1 10 SHEET 1 AA1 4 LYS A 51 VAL A 54 0 SHEET 2 AA1 4 ILE A 31 ARG A 37 -1 N VAL A 33 O PHE A 52 SHEET 3 AA1 4 LEU A 109 ALA A 114 1 O MET A 111 N ILE A 34 SHEET 4 AA1 4 PHE A 80 VAL A 83 -1 N LEU A 82 O VAL A 112 SHEET 1 AA2 2 GLU B -8 VAL B -7 0 SHEET 2 AA2 2 TRP B -4 LEU B -3 -1 O TRP B -4 N VAL B -7 SHEET 1 AA3 4 LYS B 51 PRO B 55 0 SHEET 2 AA3 4 LYS B 30 ARG B 37 -1 N ILE B 31 O VAL B 54 SHEET 3 AA3 4 LEU B 109 ALA B 114 1 O MET B 111 N ILE B 34 SHEET 4 AA3 4 PHE B 80 VAL B 83 -1 N LEU B 82 O VAL B 112 CRYST1 37.004 47.740 72.902 90.00 95.49 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.027024 0.000000 0.002599 0.00000 SCALE2 0.000000 0.020947 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013780 0.00000