HEADER DE NOVO PROTEIN 15-JUN-23 8T6C TITLE CRYSTAL STRUCTURE OF T33-18.2: DEEP-LEARNING SEQUENCE DESIGN OF CO- TITLE 2 ASSEMBLING TETRAHEDRON PROTEIN NANOPARTICLES COMPND MOL_ID: 1; COMPND 2 MOLECULE: T33-18.2 : B; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: T33-18.2 : A; COMPND 7 CHAIN: E, F, G, H; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 3 ORGANISM_TAXID: 32630; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 8 ORGANISM_TAXID: 32630; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DEEP-LEARNING, DE NOVO DESIGN, PROTEINMPNN, ROSETTA, TETRAHEDRONS, DE KEYWDS 2 NOVO PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.K.BERA,R.J.DE HAAS,A.KANG,B.SANKARAN,N.P.KING REVDAT 1 24-APR-24 8T6C 0 JRNL AUTH R.J.DE HAAS,N.BRUNETTE,A.GOODSON,J.DAUPARAS,S.Y.YI,E.C.YANG, JRNL AUTH 2 Q.DOWLING,H.NGUYEN,A.KANG,A.K.BERA,B.SANKARAN,R.DE VRIES, JRNL AUTH 3 D.BAKER,N.P.KING JRNL TITL RAPID AND AUTOMATED DESIGN OF TWO-COMPONENT PROTEIN JRNL TITL 2 NANOMATERIALS USING PROTEINMPNN. JRNL REF PROC.NATL.ACAD.SCI.USA V. 121 46121 2024 JRNL REFN ESSN 1091-6490 JRNL PMID 38502697 JRNL DOI 10.1073/PNAS.2314646121 REMARK 2 REMARK 2 RESOLUTION. 1.92 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.92 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 56.87 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.950 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 70444 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.230 REMARK 3 FREE R VALUE TEST SET COUNT : 3683 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 56.8700 - 5.6900 1.00 2599 119 0.1863 0.2295 REMARK 3 2 5.6900 - 4.5100 1.00 2566 162 0.1426 0.1845 REMARK 3 3 4.5100 - 3.9400 1.00 2579 138 0.1419 0.1813 REMARK 3 4 3.9400 - 3.5800 1.00 2620 125 0.1658 0.1854 REMARK 3 5 3.5800 - 3.3300 1.00 2557 156 0.1710 0.2594 REMARK 3 6 3.3300 - 3.1300 1.00 2596 151 0.1866 0.2157 REMARK 3 7 3.1300 - 2.9700 1.00 2575 145 0.1794 0.2030 REMARK 3 8 2.9700 - 2.8400 1.00 2587 122 0.1899 0.2297 REMARK 3 9 2.8400 - 2.7300 1.00 2576 149 0.1841 0.2274 REMARK 3 10 2.7300 - 2.6400 1.00 2597 144 0.2050 0.2687 REMARK 3 11 2.6400 - 2.5600 1.00 2556 152 0.1936 0.2585 REMARK 3 12 2.5600 - 2.4800 1.00 2577 149 0.1927 0.2372 REMARK 3 13 2.4800 - 2.4200 1.00 2600 141 0.2013 0.2408 REMARK 3 14 2.4200 - 2.3600 1.00 2583 141 0.1991 0.2637 REMARK 3 15 2.3600 - 2.3100 1.00 2500 177 0.2058 0.2237 REMARK 3 16 2.3100 - 2.2600 0.97 2488 155 0.2840 0.3712 REMARK 3 17 2.2600 - 2.2100 0.96 2517 119 0.3697 0.5140 REMARK 3 18 2.2100 - 2.1700 1.00 2561 134 0.2390 0.2956 REMARK 3 19 2.1700 - 2.1300 1.00 2612 138 0.2428 0.2949 REMARK 3 20 2.1300 - 2.1000 1.00 2566 145 0.2468 0.3191 REMARK 3 21 2.1000 - 2.0600 0.99 2511 157 0.3412 0.4063 REMARK 3 22 2.0600 - 2.0300 0.99 2590 147 0.2688 0.3069 REMARK 3 23 2.0300 - 2.0000 1.00 2585 137 0.2728 0.2649 REMARK 3 24 2.0000 - 1.9700 1.00 2563 135 0.2954 0.3262 REMARK 3 25 1.9700 - 1.9500 0.99 2602 123 0.3330 0.3446 REMARK 3 26 1.9500 - 1.9200 0.96 2498 122 0.4685 0.5906 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.288 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.779 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.75 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.57 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 7378 REMARK 3 ANGLE : 0.618 9989 REMARK 3 CHIRALITY : 0.048 1110 REMARK 3 PLANARITY : 0.005 1266 REMARK 3 DIHEDRAL : 14.464 2697 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 20.5860 -11.6740 -0.4061 REMARK 3 T TENSOR REMARK 3 T11: 0.2175 T22: 0.1949 REMARK 3 T33: 0.2313 T12: -0.0031 REMARK 3 T13: -0.0125 T23: -0.0030 REMARK 3 L TENSOR REMARK 3 L11: 0.1158 L22: 0.0883 REMARK 3 L33: 0.0684 L12: -0.0095 REMARK 3 L13: 0.0042 L23: -0.0199 REMARK 3 S TENSOR REMARK 3 S11: -0.0045 S12: -0.0069 S13: 0.0045 REMARK 3 S21: 0.0227 S22: -0.0009 S23: -0.0369 REMARK 3 S31: -0.0022 S32: 0.0312 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8T6C COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-JUN-23. REMARK 100 THE DEPOSITION ID IS D_1000275347. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-MAY-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 70870 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.920 REMARK 200 RESOLUTION RANGE LOW (A) : 56.870 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.92 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.96 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.9 M NPS, 0.1 M TRIS-BICINE, PH 8.5, REMARK 280 30% V/V GLYCEROL + PEG4000, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 69.40600 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 40.07157 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 43.03533 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 69.40600 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 40.07157 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 43.03533 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 69.40600 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 40.07157 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 43.03533 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 80.14315 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 86.07067 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 80.14315 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 86.07067 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 80.14315 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 86.07067 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: 24-MERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: 24-MERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 73500 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 93500 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -405.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 206 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 237 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 265 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET E 1 REMARK 465 HIS E 108 REMARK 465 HIS E 109 REMARK 465 HIS E 110 REMARK 465 MET F 1 REMARK 465 HIS F 108 REMARK 465 HIS F 109 REMARK 465 HIS F 110 REMARK 465 MET G 1 REMARK 465 HIS G 108 REMARK 465 HIS G 109 REMARK 465 HIS G 110 REMARK 465 MET H 1 REMARK 465 SER H 104 REMARK 465 HIS H 105 REMARK 465 HIS H 106 REMARK 465 HIS H 107 REMARK 465 HIS H 108 REMARK 465 HIS H 109 REMARK 465 HIS H 110 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 CG SD CE REMARK 470 MET B 1 CG SD CE REMARK 470 MET C 1 CG SD CE REMARK 470 ARG G 72 CG CD NE CZ NH1 NH2 REMARK 470 GLU G 100 CG CD OE1 OE2 REMARK 470 HIS G 107 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH21 ARG G 99 O HOH G 201 1.51 REMARK 500 HH12 ARG C 80 O HOH C 205 1.56 REMARK 500 H LYS E 86 O HOH E 205 1.59 REMARK 500 O HOH E 203 O HOH E 222 1.99 REMARK 500 OD1 ASN B 42 O HOH B 201 2.10 REMARK 500 O HOH E 242 O HOH E 247 2.13 REMARK 500 O HOH C 207 O HOH C 256 2.14 REMARK 500 OD2 ASP B 61 O HOH B 202 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD2 ASP A 26 HE ARG E 46 2555 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 94 70.21 43.44 REMARK 500 ASP B 10 -3.20 79.66 REMARK 500 GLU C 35 -39.29 80.52 REMARK 500 GLU D 35 -54.58 67.24 REMARK 500 LEU D 38 11.61 -141.70 REMARK 500 GLU G 43 117.75 -161.63 REMARK 500 HIS G 106 -6.42 83.87 REMARK 500 GLU H 43 -76.89 -139.69 REMARK 500 REMARK 500 REMARK: NULL DBREF 8T6C A 0 118 PDB 8T6C 8T6C 0 118 DBREF 8T6C B 0 118 PDB 8T6C 8T6C 0 118 DBREF 8T6C C 0 118 PDB 8T6C 8T6C 0 118 DBREF 8T6C D 0 118 PDB 8T6C 8T6C 0 118 DBREF 8T6C E 1 110 PDB 8T6C 8T6C 1 110 DBREF 8T6C F 1 110 PDB 8T6C 8T6C 1 110 DBREF 8T6C G 1 110 PDB 8T6C 8T6C 1 110 DBREF 8T6C H 1 110 PDB 8T6C 8T6C 1 110 SEQRES 1 A 119 ALA MET VAL TYR MET VAL TYR VAL SER GLN ASP ARG LEU SEQRES 2 A 119 THR PRO SER ALA LYS HIS ALA VAL ALA GLN ALA ILE THR SEQRES 3 A 119 ASP ALA HIS LEU THR HIS THR GLY GLU GLU HIS SER LEU SEQRES 4 A 119 ALA GLN VAL ASN PHE GLN GLU GLN PRO ALA GLY ASN VAL SEQRES 5 A 119 PHE LEU GLY GLY VAL GLN GLN GLY GLY ASP THR ILE PHE SEQRES 6 A 119 VAL HIS GLY LEU HIS ARG GLU GLY ARG SER ASP GLU LEU SEQRES 7 A 119 LYS GLN ARG LEU ILE THR ASP ILE ILE ALA LYS VAL SER SEQRES 8 A 119 ILE ALA ALA ASP ILE ASP PRO LYS HIS ILE TRP VAL TYR SEQRES 9 A 119 PHE GLY GLU MET PRO ALA SER GLN MET VAL GLU TYR GLY SEQRES 10 A 119 GLY LEU SEQRES 1 B 119 ALA MET VAL TYR MET VAL TYR VAL SER GLN ASP ARG LEU SEQRES 2 B 119 THR PRO SER ALA LYS HIS ALA VAL ALA GLN ALA ILE THR SEQRES 3 B 119 ASP ALA HIS LEU THR HIS THR GLY GLU GLU HIS SER LEU SEQRES 4 B 119 ALA GLN VAL ASN PHE GLN GLU GLN PRO ALA GLY ASN VAL SEQRES 5 B 119 PHE LEU GLY GLY VAL GLN GLN GLY GLY ASP THR ILE PHE SEQRES 6 B 119 VAL HIS GLY LEU HIS ARG GLU GLY ARG SER ASP GLU LEU SEQRES 7 B 119 LYS GLN ARG LEU ILE THR ASP ILE ILE ALA LYS VAL SER SEQRES 8 B 119 ILE ALA ALA ASP ILE ASP PRO LYS HIS ILE TRP VAL TYR SEQRES 9 B 119 PHE GLY GLU MET PRO ALA SER GLN MET VAL GLU TYR GLY SEQRES 10 B 119 GLY LEU SEQRES 1 C 119 ALA MET VAL TYR MET VAL TYR VAL SER GLN ASP ARG LEU SEQRES 2 C 119 THR PRO SER ALA LYS HIS ALA VAL ALA GLN ALA ILE THR SEQRES 3 C 119 ASP ALA HIS LEU THR HIS THR GLY GLU GLU HIS SER LEU SEQRES 4 C 119 ALA GLN VAL ASN PHE GLN GLU GLN PRO ALA GLY ASN VAL SEQRES 5 C 119 PHE LEU GLY GLY VAL GLN GLN GLY GLY ASP THR ILE PHE SEQRES 6 C 119 VAL HIS GLY LEU HIS ARG GLU GLY ARG SER ASP GLU LEU SEQRES 7 C 119 LYS GLN ARG LEU ILE THR ASP ILE ILE ALA LYS VAL SER SEQRES 8 C 119 ILE ALA ALA ASP ILE ASP PRO LYS HIS ILE TRP VAL TYR SEQRES 9 C 119 PHE GLY GLU MET PRO ALA SER GLN MET VAL GLU TYR GLY SEQRES 10 C 119 GLY LEU SEQRES 1 D 119 ALA MET VAL TYR MET VAL TYR VAL SER GLN ASP ARG LEU SEQRES 2 D 119 THR PRO SER ALA LYS HIS ALA VAL ALA GLN ALA ILE THR SEQRES 3 D 119 ASP ALA HIS LEU THR HIS THR GLY GLU GLU HIS SER LEU SEQRES 4 D 119 ALA GLN VAL ASN PHE GLN GLU GLN PRO ALA GLY ASN VAL SEQRES 5 D 119 PHE LEU GLY GLY VAL GLN GLN GLY GLY ASP THR ILE PHE SEQRES 6 D 119 VAL HIS GLY LEU HIS ARG GLU GLY ARG SER ASP GLU LEU SEQRES 7 D 119 LYS GLN ARG LEU ILE THR ASP ILE ILE ALA LYS VAL SER SEQRES 8 D 119 ILE ALA ALA ASP ILE ASP PRO LYS HIS ILE TRP VAL TYR SEQRES 9 D 119 PHE GLY GLU MET PRO ALA SER GLN MET VAL GLU TYR GLY SEQRES 10 D 119 GLY LEU SEQRES 1 E 110 MET SER LEU ILE LEU VAL TYR SER THR PHE PRO ASN LEU SEQRES 2 E 110 LEU GLU ALA LYS LEU ILE GLY LEU LYS LEU LEU LYS LYS SEQRES 3 E 110 ARG LEU ILE ALA CYS PHE ASN ALA PHE GLU ILE THR SER SEQRES 4 E 110 ALA TYR TRP GLU LYS GLY ARG ILE ARG THR ARG ARG GLU SEQRES 5 E 110 TRP ALA ALA ILE PHE LYS THR THR GLU GLU LYS GLU LYS SEQRES 6 E 110 GLU LEU TYR GLU GLU LEU ARG LYS LEU HIS PRO TYR GLU SEQRES 7 E 110 THR PRO ALA ILE PHE THR LEU LYS VAL GLU ASN VAL LEU SEQRES 8 E 110 THR GLU TYR MET ASN TRP LEU ARG GLU SER VAL GLY SER SEQRES 9 E 110 HIS HIS HIS HIS HIS HIS SEQRES 1 F 110 MET SER LEU ILE LEU VAL TYR SER THR PHE PRO ASN LEU SEQRES 2 F 110 LEU GLU ALA LYS LEU ILE GLY LEU LYS LEU LEU LYS LYS SEQRES 3 F 110 ARG LEU ILE ALA CYS PHE ASN ALA PHE GLU ILE THR SER SEQRES 4 F 110 ALA TYR TRP GLU LYS GLY ARG ILE ARG THR ARG ARG GLU SEQRES 5 F 110 TRP ALA ALA ILE PHE LYS THR THR GLU GLU LYS GLU LYS SEQRES 6 F 110 GLU LEU TYR GLU GLU LEU ARG LYS LEU HIS PRO TYR GLU SEQRES 7 F 110 THR PRO ALA ILE PHE THR LEU LYS VAL GLU ASN VAL LEU SEQRES 8 F 110 THR GLU TYR MET ASN TRP LEU ARG GLU SER VAL GLY SER SEQRES 9 F 110 HIS HIS HIS HIS HIS HIS SEQRES 1 G 110 MET SER LEU ILE LEU VAL TYR SER THR PHE PRO ASN LEU SEQRES 2 G 110 LEU GLU ALA LYS LEU ILE GLY LEU LYS LEU LEU LYS LYS SEQRES 3 G 110 ARG LEU ILE ALA CYS PHE ASN ALA PHE GLU ILE THR SER SEQRES 4 G 110 ALA TYR TRP GLU LYS GLY ARG ILE ARG THR ARG ARG GLU SEQRES 5 G 110 TRP ALA ALA ILE PHE LYS THR THR GLU GLU LYS GLU LYS SEQRES 6 G 110 GLU LEU TYR GLU GLU LEU ARG LYS LEU HIS PRO TYR GLU SEQRES 7 G 110 THR PRO ALA ILE PHE THR LEU LYS VAL GLU ASN VAL LEU SEQRES 8 G 110 THR GLU TYR MET ASN TRP LEU ARG GLU SER VAL GLY SER SEQRES 9 G 110 HIS HIS HIS HIS HIS HIS SEQRES 1 H 110 MET SER LEU ILE LEU VAL TYR SER THR PHE PRO ASN LEU SEQRES 2 H 110 LEU GLU ALA LYS LEU ILE GLY LEU LYS LEU LEU LYS LYS SEQRES 3 H 110 ARG LEU ILE ALA CYS PHE ASN ALA PHE GLU ILE THR SER SEQRES 4 H 110 ALA TYR TRP GLU LYS GLY ARG ILE ARG THR ARG ARG GLU SEQRES 5 H 110 TRP ALA ALA ILE PHE LYS THR THR GLU GLU LYS GLU LYS SEQRES 6 H 110 GLU LEU TYR GLU GLU LEU ARG LYS LEU HIS PRO TYR GLU SEQRES 7 H 110 THR PRO ALA ILE PHE THR LEU LYS VAL GLU ASN VAL LEU SEQRES 8 H 110 THR GLU TYR MET ASN TRP LEU ARG GLU SER VAL GLY SER SEQRES 9 H 110 HIS HIS HIS HIS HIS HIS FORMUL 9 HOH *422(H2 O) HELIX 1 AA1 THR A 13 GLY A 33 1 21 HELIX 2 AA2 SER A 74 ASP A 94 1 21 HELIX 3 AA3 ASP A 96 LYS A 98 5 3 HELIX 4 AA4 PRO A 108 SER A 110 5 3 HELIX 5 AA5 GLU A 114 LEU A 118 5 5 HELIX 6 AA6 THR B 13 THR B 32 1 20 HELIX 7 AA7 SER B 74 ASP B 94 1 21 HELIX 8 AA8 ASP B 96 LYS B 98 5 3 HELIX 9 AA9 PRO B 108 MET B 112 5 5 HELIX 10 AB1 GLU B 114 LEU B 118 5 5 HELIX 11 AB2 THR C 13 GLY C 33 1 21 HELIX 12 AB3 SER C 74 ALA C 93 1 20 HELIX 13 AB4 ASP C 96 LYS C 98 5 3 HELIX 14 AB5 PRO C 108 SER C 110 5 3 HELIX 15 AB6 GLU C 114 LEU C 118 5 5 HELIX 16 AB7 THR D 13 THR D 32 1 20 HELIX 17 AB8 SER D 74 ASP D 94 1 21 HELIX 18 AB9 ASP D 96 LYS D 98 5 3 HELIX 19 AC1 PRO D 108 SER D 110 5 3 HELIX 20 AC2 GLU D 114 LEU D 118 5 5 HELIX 21 AC3 ASN E 12 LYS E 26 1 15 HELIX 22 AC4 LYS E 63 HIS E 75 1 13 HELIX 23 AC5 LEU E 91 VAL E 102 1 12 HELIX 24 AC6 GLY E 103 HIS E 107 5 5 HELIX 25 AC7 ASN F 12 LYS F 26 1 15 HELIX 26 AC8 LYS F 63 HIS F 75 1 13 HELIX 27 AC9 LEU F 91 VAL F 102 1 12 HELIX 28 AD1 GLY F 103 HIS F 107 5 5 HELIX 29 AD2 ASN G 12 LYS G 26 1 15 HELIX 30 AD3 LYS G 63 HIS G 75 1 13 HELIX 31 AD4 LEU G 91 VAL G 102 1 12 HELIX 32 AD5 ASN H 12 LYS H 26 1 15 HELIX 33 AD6 LYS H 63 HIS H 75 1 13 HELIX 34 AD7 LEU H 91 GLY H 103 1 13 SHEET 1 AA1 7 MET C 112 VAL C 113 0 SHEET 2 AA1 7 ILE A 100 MET A 107 -1 N VAL A 102 O VAL C 113 SHEET 3 AA1 7 ILE A 63 ARG A 70 1 N HIS A 69 O GLY A 105 SHEET 4 AA1 7 VAL A 2 SER A 8 -1 N VAL A 2 O LEU A 68 SHEET 5 AA1 7 GLN A 40 GLN A 46 1 O GLN A 44 N VAL A 5 SHEET 6 AA1 7 VAL D 51 LEU D 53 -1 O PHE D 52 N VAL A 41 SHEET 7 AA1 7 VAL D 56 GLN D 57 -1 O VAL D 56 N LEU D 53 SHEET 1 AA2 7 VAL A 56 GLN A 57 0 SHEET 2 AA2 7 VAL A 51 LEU A 53 -1 N LEU A 53 O VAL A 56 SHEET 3 AA2 7 GLN C 40 GLN C 46 -1 O VAL C 41 N PHE A 52 SHEET 4 AA2 7 VAL C 2 SER C 8 1 N VAL C 5 O GLN C 44 SHEET 5 AA2 7 ILE C 63 ARG C 70 -1 O LEU C 68 N VAL C 2 SHEET 6 AA2 7 ILE C 100 MET C 107 1 O TYR C 103 N GLY C 67 SHEET 7 AA2 7 MET D 112 VAL D 113 -1 O VAL D 113 N VAL C 102 SHEET 1 AA3 7 MET A 112 VAL A 113 0 SHEET 2 AA3 7 ILE D 100 MET D 107 -1 O VAL D 102 N VAL A 113 SHEET 3 AA3 7 ILE D 63 ARG D 70 1 N GLY D 67 O GLY D 105 SHEET 4 AA3 7 VAL D 2 SER D 8 -1 N TYR D 6 O PHE D 64 SHEET 5 AA3 7 GLN D 40 GLN D 46 1 O ASN D 42 N TYR D 3 SHEET 6 AA3 7 VAL C 51 LEU C 53 -1 N PHE C 52 O VAL D 41 SHEET 7 AA3 7 VAL C 56 GLN C 57 -1 O VAL C 56 N LEU C 53 SHEET 1 AA4 4 GLN B 40 GLN B 46 0 SHEET 2 AA4 4 VAL B 2 SER B 8 1 N TYR B 3 O ASN B 42 SHEET 3 AA4 4 ILE B 63 ARG B 70 -1 O LEU B 68 N VAL B 2 SHEET 4 AA4 4 ILE B 100 MET B 107 1 O GLY B 105 N GLY B 67 SHEET 1 AA5 2 PHE B 52 LEU B 53 0 SHEET 2 AA5 2 VAL B 56 GLN B 57 -1 O VAL B 56 N LEU B 53 SHEET 1 AA6 9 ILE E 82 LYS E 86 0 SHEET 2 AA6 9 LEU E 3 PHE E 10 -1 N LEU E 5 O LEU E 85 SHEET 3 AA6 9 ARG E 46 THR E 60 -1 O PHE E 57 N VAL E 6 SHEET 4 AA6 9 CYS E 31 GLU E 43 -1 N TYR E 41 O ARG E 48 SHEET 5 AA6 9 CYS F 31 GLU F 43 -1 O THR F 38 N ALA E 34 SHEET 6 AA6 9 ARG F 46 THR F 60 -1 O ARG F 48 N TYR F 41 SHEET 7 AA6 9 LEU F 3 PHE F 10 -1 N VAL F 6 O PHE F 57 SHEET 8 AA6 9 PHE F 83 LYS F 86 -1 O LEU F 85 N LEU F 5 SHEET 9 AA6 9 ASN E 89 VAL E 90 -1 N ASN E 89 O THR F 84 SHEET 1 AA7 4 CYS G 31 GLU G 43 0 SHEET 2 AA7 4 ARG G 46 THR G 60 -1 O ARG G 50 N SER G 39 SHEET 3 AA7 4 LEU G 3 PHE G 10 -1 N VAL G 6 O PHE G 57 SHEET 4 AA7 4 PHE G 83 LYS G 86 -1 O LEU G 85 N LEU G 5 SHEET 1 AA8 4 CYS H 31 TRP H 42 0 SHEET 2 AA8 4 ILE H 47 THR H 60 -1 O ARG H 50 N SER H 39 SHEET 3 AA8 4 LEU H 3 PHE H 10 -1 N VAL H 6 O PHE H 57 SHEET 4 AA8 4 PHE H 83 LYS H 86 -1 O LEU H 85 N LEU H 5 CRYST1 138.812 138.812 129.106 90.00 90.00 120.00 H 3 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007204 0.004159 0.000000 0.00000 SCALE2 0.000000 0.008318 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007746 0.00000