HEADER VIRAL PROTEIN,HYDROLASE/INHIBITOR 19-JUN-23 8T6Z TITLE INFLUENZA PAN ENDONUCLEASE I38T MUTANT WITH 6-(4-(1H-TETRAZOL-5-YL)-2- TITLE 2 (TRIFLUOROMETHYL)PHENYL)-3-HYDROXY-4-OXO-1,4-DIHYDROPYRIDINE-2- TITLE 3 CARBOXYLIC ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYMERASE ACIDIC PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL DOMAIN; COMPND 5 SYNONYM: RNA-DIRECTED RNA POLYMERASE SUBUNIT P2; COMPND 6 EC: 3.1.-.-; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS; SOURCE 3 ORGANISM_TAXID: 641501; SOURCE 4 STRAIN: A/CALIFORNIA/04/2009(H1N1); SOURCE 5 GENE: PA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS INFLUENZA ENDONUCLEASE, RESISTANCE, DRUG DISCOVERY, METAL-BINDING KEYWDS 2 PHARMACOPHORE, VIRAL PROTEIN, HYDROLASE-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.J.KOHLBRAND,S.M.COHEN REVDAT 1 08-MAY-24 8T6Z 0 JRNL AUTH A.J.KOHLBRAND,R.W.STOKES,B.SANKARAN,S.M.COHEN JRNL TITL STRUCTURAL STUDIES OF INHIBITORS WITH CLINICALLY RELEVANT JRNL TITL 2 INFLUENZA ENDONUCLEASE VARIANTS. JRNL REF BIOCHEMISTRY V. 63 264 2024 JRNL REFN ISSN 0006-2960 JRNL PMID 38190441 JRNL DOI 10.1021/ACS.BIOCHEM.3C00536 REMARK 2 REMARK 2 RESOLUTION. 1.91 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.91 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 65.74 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.7 REMARK 3 NUMBER OF REFLECTIONS : 27414 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.232 REMARK 3 R VALUE (WORKING SET) : 0.228 REMARK 3 FREE R VALUE : 0.266 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.090 REMARK 3 FREE R VALUE TEST SET COUNT : 2765 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 65.7400 - 5.1900 1.00 1363 161 0.2034 0.1948 REMARK 3 2 5.1800 - 4.1200 1.00 1363 154 0.1669 0.2053 REMARK 3 3 4.1200 - 3.6000 1.00 1351 149 0.1756 0.2488 REMARK 3 4 3.6000 - 3.2700 1.00 1370 148 0.2002 0.2344 REMARK 3 5 3.2700 - 3.0300 1.00 1341 151 0.2364 0.3188 REMARK 3 6 3.0300 - 2.8500 1.00 1358 152 0.2437 0.3434 REMARK 3 7 2.8500 - 2.7100 1.00 1363 145 0.2673 0.2545 REMARK 3 8 2.7100 - 2.5900 1.00 1359 153 0.2538 0.2978 REMARK 3 9 2.5900 - 2.4900 1.00 1368 153 0.2947 0.3408 REMARK 3 10 2.4900 - 2.4100 1.00 1352 154 0.2800 0.3536 REMARK 3 11 2.4100 - 2.3300 1.00 1363 153 0.2995 0.3506 REMARK 3 12 2.3300 - 2.2700 1.00 1348 149 0.3285 0.3537 REMARK 3 13 2.2700 - 2.2100 1.00 1353 147 0.3578 0.3924 REMARK 3 14 2.2100 - 2.1500 1.00 1342 152 0.3610 0.3759 REMARK 3 15 2.1500 - 2.1000 1.00 1365 149 0.3933 0.4126 REMARK 3 16 2.1000 - 2.0600 0.97 1323 149 0.4232 0.4773 REMARK 3 17 2.0600 - 2.0200 0.78 1070 118 0.4334 0.5479 REMARK 3 18 2.0200 - 1.9800 0.71 941 116 0.4534 0.4717 REMARK 3 19 1.9800 - 1.9400 0.29 392 49 0.4545 0.3861 REMARK 3 20 1.9400 - 1.9100 0.41 564 63 0.5520 0.5624 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.512 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 41.558 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 47.19 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 63.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 1517 REMARK 3 ANGLE : 1.125 2041 REMARK 3 CHIRALITY : 0.062 214 REMARK 3 PLANARITY : 0.010 260 REMARK 3 DIHEDRAL : 20.846 568 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID -1:31 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.559 7.577 -20.432 REMARK 3 T TENSOR REMARK 3 T11: 0.6859 T22: 0.4624 REMARK 3 T33: 0.4772 T12: 0.0080 REMARK 3 T13: 0.0963 T23: -0.1293 REMARK 3 L TENSOR REMARK 3 L11: 8.1686 L22: 3.0482 REMARK 3 L33: 7.1014 L12: 3.8804 REMARK 3 L13: 1.6648 L23: -0.0304 REMARK 3 S TENSOR REMARK 3 S11: -0.3040 S12: 1.1110 S13: -0.7333 REMARK 3 S21: -0.3111 S22: 0.3584 S23: -0.1664 REMARK 3 S31: 0.3498 S32: 0.0469 S33: -0.0814 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN A AND RESID 32:126 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.104 13.038 -8.271 REMARK 3 T TENSOR REMARK 3 T11: 0.6040 T22: 0.3092 REMARK 3 T33: 0.5514 T12: -0.0017 REMARK 3 T13: 0.0696 T23: 0.0347 REMARK 3 L TENSOR REMARK 3 L11: 7.0231 L22: 1.1204 REMARK 3 L33: 1.8748 L12: 0.3238 REMARK 3 L13: -0.6888 L23: 0.5009 REMARK 3 S TENSOR REMARK 3 S11: 0.0096 S12: -0.0065 S13: -0.4596 REMARK 3 S21: 0.1509 S22: -0.0098 S23: 0.4370 REMARK 3 S31: 0.1159 S32: -0.1376 S33: 0.0368 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN A AND RESID 127:149 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.080 25.610 -6.437 REMARK 3 T TENSOR REMARK 3 T11: 0.6297 T22: 0.3144 REMARK 3 T33: 0.6020 T12: -0.0152 REMARK 3 T13: 0.1116 T23: -0.0167 REMARK 3 L TENSOR REMARK 3 L11: 7.3303 L22: 3.8306 REMARK 3 L33: 9.5166 L12: 0.3364 REMARK 3 L13: 3.0569 L23: -4.4465 REMARK 3 S TENSOR REMARK 3 S11: -0.0712 S12: 0.1351 S13: 1.2246 REMARK 3 S21: 0.2162 S22: 0.1162 S23: 0.4160 REMARK 3 S31: -1.0469 S32: -0.4204 S33: -0.0284 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN A AND RESID 150:195 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.735 16.723 -4.297 REMARK 3 T TENSOR REMARK 3 T11: 0.6699 T22: 0.2305 REMARK 3 T33: 0.3408 T12: -0.0139 REMARK 3 T13: 0.0088 T23: 0.0148 REMARK 3 L TENSOR REMARK 3 L11: 9.7440 L22: 0.0530 REMARK 3 L33: 5.1701 L12: -0.1162 REMARK 3 L13: -2.8335 L23: 0.4953 REMARK 3 S TENSOR REMARK 3 S11: 0.1354 S12: -0.4184 S13: 0.0448 REMARK 3 S21: 0.2806 S22: 0.0200 S23: 0.1228 REMARK 3 S31: -0.3668 S32: 0.3657 S33: -0.1344 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8T6Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-AUG-23. REMARK 100 THE DEPOSITION ID IS D_1000275405. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-APR-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27414 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.910 REMARK 200 RESOLUTION RANGE LOW (A) : 65.780 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 30.80 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.91 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.98 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 32% PEG (MW 4000 G/MOL), 100 MM TRIS REMARK 280 (PH 8.35), AND 220 MM SODIUM ACETATE, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 306K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+2/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 80.42067 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 40.21033 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 80.42067 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 40.21033 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 80.42067 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 40.21033 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 80.42067 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 40.21033 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 408 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -5 REMARK 465 GLY A -4 REMARK 465 SER A -3 REMARK 465 GLY A -2 REMARK 465 SER A 65 REMARK 465 GLY A 66 REMARK 465 ASP A 67 REMARK 465 PRO A 68 REMARK 465 ASN A 69 REMARK 465 ALA A 70 REMARK 465 LEU A 71 REMARK 465 LEU A 72 REMARK 465 ARG A 196 REMARK 465 GLY A 197 REMARK 465 GLU A 198 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 34 CD CE NZ REMARK 470 PHE A 51 CG CD1 CD2 CE1 CE2 CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 51 5.17 -68.22 REMARK 500 PRO A 107 -168.72 -79.63 REMARK 500 ARG A 125 -159.54 -101.27 REMARK 500 LYS A 139 3.19 58.25 REMARK 500 LYS A 158 18.96 52.64 REMARK 500 THR A 162 -55.01 70.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 301 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 41 NE2 REMARK 620 2 ASP A 108 OD2 105.8 REMARK 620 3 GLU A 119 OE2 175.6 76.8 REMARK 620 4 ILE A 120 O 90.2 91.1 86.2 REMARK 620 5 IJM A 303 O23 97.6 97.5 85.4 166.3 REMARK 620 6 IJM A 303 O25 85.7 166.6 92.1 95.7 73.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 302 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 80 OE2 REMARK 620 2 ASP A 108 OD1 87.4 REMARK 620 3 IJM A 303 O01 82.9 163.5 REMARK 620 4 IJM A 303 O23 103.6 87.7 81.6 REMARK 620 5 HOH A 401 O 173.0 95.4 95.7 83.0 REMARK 620 6 HOH A 404 O 95.8 100.8 93.6 159.2 77.3 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8T5W RELATED DB: PDB REMARK 900 RELATED ID: 8T5V RELATED DB: PDB REMARK 900 RELATED ID: 8T5Z RELATED DB: PDB REMARK 900 RELATED ID: 8T67 RELATED DB: PDB DBREF 8T6Z A 1 198 UNP C3W5S0 C3W5S0_I09A0 1 198 SEQADV 8T6Z MET A -5 UNP C3W5S0 INITIATING METHIONINE SEQADV 8T6Z GLY A -4 UNP C3W5S0 EXPRESSION TAG SEQADV 8T6Z SER A -3 UNP C3W5S0 EXPRESSION TAG SEQADV 8T6Z GLY A -2 UNP C3W5S0 EXPRESSION TAG SEQADV 8T6Z SER A -1 UNP C3W5S0 EXPRESSION TAG SEQADV 8T6Z ALA A 0 UNP C3W5S0 EXPRESSION TAG SEQADV 8T6Z THR A 38 UNP C3W5S0 ILE 38 ENGINEERED MUTATION SEQADV 8T6Z GLY A 52 UNP C3W5S0 HIS 52 CONFLICT SEQADV 8T6Z A UNP C3W5S0 PHE 53 DELETION SEQADV 8T6Z A UNP C3W5S0 ILE 54 DELETION SEQADV 8T6Z A UNP C3W5S0 ASP 55 DELETION SEQADV 8T6Z A UNP C3W5S0 GLU 56 DELETION SEQADV 8T6Z A UNP C3W5S0 ARG 57 DELETION SEQADV 8T6Z A UNP C3W5S0 GLY 58 DELETION SEQADV 8T6Z A UNP C3W5S0 GLU 59 DELETION SEQADV 8T6Z A UNP C3W5S0 SER 60 DELETION SEQADV 8T6Z A UNP C3W5S0 ILE 61 DELETION SEQADV 8T6Z A UNP C3W5S0 ILE 62 DELETION SEQADV 8T6Z A UNP C3W5S0 VAL 63 DELETION SEQADV 8T6Z A UNP C3W5S0 GLU 64 DELETION SEQRES 1 A 192 MET GLY SER GLY SER ALA MET GLU ASP PHE VAL ARG GLN SEQRES 2 A 192 CYS PHE ASN PRO MET ILE VAL GLU LEU ALA GLU LYS ALA SEQRES 3 A 192 MET LYS GLU TYR GLY GLU ASP PRO LYS ILE GLU THR ASN SEQRES 4 A 192 LYS PHE ALA ALA THR CYS THR HIS LEU GLU VAL CYS PHE SEQRES 5 A 192 MET TYR SER ASP PHE GLY SER GLY ASP PRO ASN ALA LEU SEQRES 6 A 192 LEU LYS HIS ARG PHE GLU ILE ILE GLU GLY ARG ASP ARG SEQRES 7 A 192 ILE MET ALA TRP THR VAL VAL ASN SER ILE CYS ASN THR SEQRES 8 A 192 THR GLY VAL GLU LYS PRO LYS PHE LEU PRO ASP LEU TYR SEQRES 9 A 192 ASP TYR LYS GLU ASN ARG PHE ILE GLU ILE GLY VAL THR SEQRES 10 A 192 ARG ARG GLU VAL HIS ILE TYR TYR LEU GLU LYS ALA ASN SEQRES 11 A 192 LYS ILE LYS SER GLU LYS THR HIS ILE HIS ILE PHE SER SEQRES 12 A 192 PHE THR GLY GLU GLU MET ALA THR LYS ALA ASP TYR THR SEQRES 13 A 192 LEU ASP GLU GLU SER ARG ALA ARG ILE LYS THR ARG LEU SEQRES 14 A 192 PHE THR ILE ARG GLN GLU MET ALA SER ARG SER LEU TRP SEQRES 15 A 192 ASP SER PHE ARG GLN SER GLU ARG GLY GLU HET MN A 301 1 HET MN A 302 1 HET IJM A 303 32 HETNAM MN MANGANESE (II) ION HETNAM IJM (6M)-3-HYDROXY-4-OXO-6-[(4M)-4-(1H-TETRAZOL-5-YL)-2- HETNAM 2 IJM (TRIFLUOROMETHYL)PHENYL]-1,4-DIHYDROPYRIDINE-2- HETNAM 3 IJM CARBOXYLIC ACID FORMUL 2 MN 2(MN 2+) FORMUL 4 IJM C14 H8 F3 N5 O4 FORMUL 5 HOH *27(H2 O) HELIX 1 AA1 SER A -1 PHE A 9 1 11 HELIX 2 AA2 ASN A 10 GLY A 25 1 16 HELIX 3 AA3 GLU A 31 PHE A 51 1 21 HELIX 4 AA4 ASP A 83 GLY A 99 1 17 HELIX 5 AA5 GLU A 126 LYS A 139 1 14 HELIX 6 AA6 LYS A 158 ASP A 160 5 3 HELIX 7 AA7 ASP A 164 ARG A 185 1 22 HELIX 8 AA8 LEU A 187 SER A 194 1 8 SHEET 1 AA1 5 PHE A 76 ILE A 78 0 SHEET 2 AA1 5 LEU A 109 ASP A 111 -1 O TYR A 110 N GLU A 77 SHEET 3 AA1 5 ARG A 116 THR A 123 -1 O ARG A 116 N ASP A 111 SHEET 4 AA1 5 HIS A 144 SER A 149 1 O HIS A 144 N GLU A 119 SHEET 5 AA1 5 GLU A 154 ALA A 156 -1 O MET A 155 N ILE A 147 LINK NE2 HIS A 41 MN MN A 301 1555 1555 2.32 LINK OE2 GLU A 80 MN MN A 302 1555 1555 2.30 LINK OD2 ASP A 108 MN MN A 301 1555 1555 2.35 LINK OD1 ASP A 108 MN MN A 302 1555 1555 2.33 LINK OE2 GLU A 119 MN MN A 301 1555 1555 2.22 LINK O ILE A 120 MN MN A 301 1555 1555 2.27 LINK MN MN A 301 O23 IJM A 303 1555 1555 2.31 LINK MN MN A 301 O25 IJM A 303 1555 1555 2.27 LINK MN MN A 302 O01 IJM A 303 1555 1555 2.07 LINK MN MN A 302 O23 IJM A 303 1555 1555 2.20 LINK MN MN A 302 O HOH A 401 1555 1555 2.50 LINK MN MN A 302 O HOH A 404 1555 1555 2.47 CRYST1 75.915 75.915 120.631 90.00 90.00 120.00 P 62 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013173 0.007605 0.000000 0.00000 SCALE2 0.000000 0.015210 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008290 0.00000