HEADER ONCOPROTEIN 19-JUN-23 8T73 TITLE CRYSTAL STRUCTURE OF KRAS4A-R151G WITH BOUND GDP AND MG ION COMPND MOL_ID: 1; COMPND 2 MOLECULE: GTPASE KRAS; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: K-RAS 2,KI-RAS,C-K-RAS,C-KI-RAS; COMPND 5 EC: 3.6.5.2; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KRAS, KRAS2, RASK2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS RAS, KRAS, ONCOPROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR T.H.TRAN,M.J.WHITLEY,S.DHARMAIAH,D.K.SIMANSHU REVDAT 2 28-FEB-24 8T73 1 JRNL REVDAT 1 14-FEB-24 8T73 0 JRNL AUTH M.J.WHITLEY,T.H.TRAN,M.RIGBY,M.YI,S.DHARMAIAH,T.J.WAYBRIGHT, JRNL AUTH 2 N.RAMAKRISHNAN,S.PERKINS,T.TAYLOR,S.MESSING,D.ESPOSITO, JRNL AUTH 3 D.V.NISSLEY,F.MCCORMICK,A.G.STEPHEN,T.TURBYVILLE, JRNL AUTH 4 G.CORNILESCU,D.K.SIMANSHU JRNL TITL COMPARATIVE ANALYSIS OF KRAS4A AND KRAS4B SPLICE VARIANTS JRNL TITL 2 REVEALS DISTINCTIVE STRUCTURAL AND FUNCTIONAL PROPERTIES. JRNL REF SCI ADV V. 10 J4137 2024 JRNL REFN ESSN 2375-2548 JRNL PMID 38354232 JRNL DOI 10.1126/SCIADV.ADJ4137 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.39 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 3 NUMBER OF REFLECTIONS : 52611 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.156 REMARK 3 R VALUE (WORKING SET) : 0.154 REMARK 3 FREE R VALUE : 0.188 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2630 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.3900 - 4.0000 1.00 2716 142 0.1500 0.1640 REMARK 3 2 3.9900 - 3.1700 1.00 2692 142 0.1447 0.2047 REMARK 3 3 3.1700 - 2.7700 1.00 2677 141 0.1636 0.1758 REMARK 3 4 2.7700 - 2.5200 1.00 2736 144 0.1563 0.1815 REMARK 3 5 2.5200 - 2.3400 1.00 2691 142 0.1455 0.1983 REMARK 3 6 2.3400 - 2.2000 1.00 2684 141 0.1439 0.1810 REMARK 3 7 2.2000 - 2.0900 1.00 2700 142 0.1444 0.1836 REMARK 3 8 2.0900 - 2.0000 1.00 2746 145 0.1486 0.1809 REMARK 3 9 2.0000 - 1.9200 1.00 2678 140 0.1570 0.1759 REMARK 3 10 1.9200 - 1.8500 1.00 2684 142 0.1580 0.2067 REMARK 3 11 1.8500 - 1.8000 1.00 2706 142 0.1524 0.1852 REMARK 3 12 1.8000 - 1.7500 1.00 2716 143 0.1518 0.1806 REMARK 3 13 1.7400 - 1.7000 1.00 2689 142 0.1598 0.2291 REMARK 3 14 1.7000 - 1.6600 1.00 2682 141 0.1700 0.2339 REMARK 3 15 1.6600 - 1.6200 1.00 2749 145 0.1728 0.2111 REMARK 3 16 1.6200 - 1.5900 1.00 2679 141 0.1752 0.2365 REMARK 3 17 1.5900 - 1.5500 0.93 2476 130 0.1834 0.2138 REMARK 3 18 1.5500 - 1.5200 0.83 2252 118 0.1941 0.2212 REMARK 3 19 1.5200 - 1.5000 0.75 2028 107 0.2038 0.2568 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.140 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.21 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.83 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 2744 REMARK 3 ANGLE : 1.142 3728 REMARK 3 CHIRALITY : 0.075 420 REMARK 3 PLANARITY : 0.010 476 REMARK 3 DIHEDRAL : 15.185 1045 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID 1:58 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.636 -44.564 -26.584 REMARK 3 T TENSOR REMARK 3 T11: 0.1622 T22: 0.1729 REMARK 3 T33: 0.1948 T12: -0.0478 REMARK 3 T13: -0.0003 T23: 0.0120 REMARK 3 L TENSOR REMARK 3 L11: 1.6506 L22: 1.2031 REMARK 3 L33: 1.5802 L12: -0.3042 REMARK 3 L13: 0.7512 L23: -0.2060 REMARK 3 S TENSOR REMARK 3 S11: -0.0913 S12: 0.1071 S13: 0.1456 REMARK 3 S21: -0.0708 S22: 0.0370 S23: -0.1697 REMARK 3 S31: -0.1257 S32: 0.2250 S33: 0.0715 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN A AND RESID 59:73 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.445 -55.984 -37.047 REMARK 3 T TENSOR REMARK 3 T11: 0.3515 T22: 0.2524 REMARK 3 T33: 0.2436 T12: -0.1017 REMARK 3 T13: 0.0013 T23: -0.0394 REMARK 3 L TENSOR REMARK 3 L11: 3.9999 L22: 4.1726 REMARK 3 L33: 1.2956 L12: -0.6460 REMARK 3 L13: -0.9607 L23: 1.0662 REMARK 3 S TENSOR REMARK 3 S11: -0.1132 S12: 0.3015 S13: -0.0664 REMARK 3 S21: -0.6695 S22: 0.1185 S23: -0.0919 REMARK 3 S31: -0.0011 S32: 0.0640 S33: -0.0413 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN A AND RESID 74:109 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.636 -57.260 -23.012 REMARK 3 T TENSOR REMARK 3 T11: 0.1933 T22: 0.1849 REMARK 3 T33: 0.2386 T12: -0.0000 REMARK 3 T13: -0.0080 T23: -0.0013 REMARK 3 L TENSOR REMARK 3 L11: 1.7345 L22: 2.8201 REMARK 3 L33: 0.6942 L12: -1.1213 REMARK 3 L13: -0.0298 L23: 0.4052 REMARK 3 S TENSOR REMARK 3 S11: 0.0004 S12: 0.1706 S13: -0.3687 REMARK 3 S21: 0.0004 S22: -0.0553 S23: 0.2037 REMARK 3 S31: 0.1595 S32: 0.0206 S33: 0.0140 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN A AND RESID 110:168 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.584 -48.985 -14.872 REMARK 3 T TENSOR REMARK 3 T11: 0.1822 T22: 0.2045 REMARK 3 T33: 0.1228 T12: 0.0054 REMARK 3 T13: -0.0177 T23: -0.0009 REMARK 3 L TENSOR REMARK 3 L11: 2.6229 L22: 2.7758 REMARK 3 L33: 1.1440 L12: -0.6850 REMARK 3 L13: 0.0195 L23: -0.2380 REMARK 3 S TENSOR REMARK 3 S11: -0.1038 S12: -0.3509 S13: -0.0720 REMARK 3 S21: 0.2244 S22: 0.1627 S23: -0.0340 REMARK 3 S31: 0.0426 S32: 0.0068 S33: -0.0530 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: ( CHAIN B AND RESID 1:60 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.097 -25.909 -6.307 REMARK 3 T TENSOR REMARK 3 T11: 0.1694 T22: 0.2515 REMARK 3 T33: 0.1829 T12: -0.0327 REMARK 3 T13: -0.0137 T23: -0.0121 REMARK 3 L TENSOR REMARK 3 L11: 2.6848 L22: 1.7159 REMARK 3 L33: 1.5272 L12: -0.2575 REMARK 3 L13: -1.2486 L23: 0.4176 REMARK 3 S TENSOR REMARK 3 S11: 0.0199 S12: 0.5353 S13: -0.0366 REMARK 3 S21: -0.1790 S22: -0.0099 S23: 0.0808 REMARK 3 S31: 0.0506 S32: -0.3623 S33: 0.0184 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: ( CHAIN B AND RESID 71:77 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.548 -12.275 -9.422 REMARK 3 T TENSOR REMARK 3 T11: 0.4190 T22: 0.4331 REMARK 3 T33: 0.4692 T12: 0.0387 REMARK 3 T13: -0.0270 T23: 0.1536 REMARK 3 L TENSOR REMARK 3 L11: 5.9828 L22: 3.4655 REMARK 3 L33: 8.9905 L12: -2.2352 REMARK 3 L13: 0.8555 L23: -0.8111 REMARK 3 S TENSOR REMARK 3 S11: 0.0444 S12: 1.5033 S13: 0.8454 REMARK 3 S21: -1.2202 S22: -0.3263 S23: 0.2782 REMARK 3 S31: -0.8146 S32: -0.0538 S33: 0.4489 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: ( CHAIN B AND RESID 78:105 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.046 -16.095 -2.291 REMARK 3 T TENSOR REMARK 3 T11: 0.1484 T22: 0.1379 REMARK 3 T33: 0.1772 T12: -0.0052 REMARK 3 T13: 0.0166 T23: -0.0112 REMARK 3 L TENSOR REMARK 3 L11: 1.9428 L22: 3.0692 REMARK 3 L33: 1.6080 L12: -0.6508 REMARK 3 L13: 0.5698 L23: -1.3261 REMARK 3 S TENSOR REMARK 3 S11: 0.0204 S12: 0.1100 S13: 0.1897 REMARK 3 S21: 0.0390 S22: -0.0626 S23: -0.1968 REMARK 3 S31: -0.1646 S32: 0.0871 S33: 0.0201 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: ( CHAIN B AND RESID 109:168 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.587 -22.262 6.029 REMARK 3 T TENSOR REMARK 3 T11: 0.1523 T22: 0.1298 REMARK 3 T33: 0.1284 T12: -0.0019 REMARK 3 T13: 0.0220 T23: 0.0013 REMARK 3 L TENSOR REMARK 3 L11: 2.2744 L22: 2.2948 REMARK 3 L33: 1.6697 L12: 0.2462 REMARK 3 L13: -0.1631 L23: 0.1789 REMARK 3 S TENSOR REMARK 3 S11: -0.0042 S12: -0.1201 S13: 0.0389 REMARK 3 S21: 0.1441 S22: 0.0560 S23: 0.0469 REMARK 3 S31: 0.0514 S32: -0.0098 S33: -0.0536 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8T73 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-JUN-23. REMARK 100 THE DEPOSITION ID IS D_1000275274. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-AUG-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791 REMARK 200 MONOCHROMATOR : SI(220) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52617 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 42.390 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.06200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.9400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.59 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.46300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM HEPES PH 7.4, 2 M AMMONIUM REMARK 280 SULFATE , 0.1 M MGCL2.6H2O, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 481 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 457 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 460 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 LYS A 169 REMARK 465 GLY B 0 REMARK 465 GLN B 61 REMARK 465 GLU B 62 REMARK 465 GLU B 63 REMARK 465 TYR B 64 REMARK 465 SER B 65 REMARK 465 ALA B 66 REMARK 465 MET B 67 REMARK 465 ARG B 68 REMARK 465 ASP B 69 REMARK 465 GLN B 70 REMARK 465 LYS B 169 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 302 O HOH A 435 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 33 119.98 -39.51 REMARK 500 LYS A 117 32.19 71.46 REMARK 500 ARG A 149 -4.65 83.27 REMARK 500 ASP B 33 117.60 -38.51 REMARK 500 LYS B 117 31.19 72.76 REMARK 500 ARG B 149 -6.33 87.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 17 OG REMARK 620 2 GDP A 201 O2B 91.7 REMARK 620 3 HOH A 334 O 81.5 95.5 REMARK 620 4 HOH A 348 O 93.2 87.9 173.7 REMARK 620 5 HOH A 366 O 92.1 171.4 92.6 84.2 REMARK 620 6 HOH A 372 O 170.3 90.7 88.9 96.3 86.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 17 OG REMARK 620 2 GDP B 201 O2B 92.3 REMARK 620 3 HOH B 328 O 91.6 87.8 REMARK 620 4 HOH B 330 O 83.7 90.7 175.0 REMARK 620 5 HOH B 362 O 175.4 89.3 92.8 91.9 REMARK 620 6 HOH B 364 O 90.1 172.9 85.5 96.3 88.8 REMARK 620 N 1 2 3 4 5 DBREF 8T73 A 1 169 UNP P01116 RASK_HUMAN 1 169 DBREF 8T73 B 1 169 UNP P01116 RASK_HUMAN 1 169 SEQADV 8T73 GLY A 0 UNP P01116 EXPRESSION TAG SEQADV 8T73 GLY A 151 UNP P01116 ARG 151 ENGINEERED MUTATION SEQADV 8T73 GLY B 0 UNP P01116 EXPRESSION TAG SEQADV 8T73 GLY B 151 UNP P01116 ARG 151 ENGINEERED MUTATION SEQRES 1 A 170 GLY MET THR GLU TYR LYS LEU VAL VAL VAL GLY ALA GLY SEQRES 2 A 170 GLY VAL GLY LYS SER ALA LEU THR ILE GLN LEU ILE GLN SEQRES 3 A 170 ASN HIS PHE VAL ASP GLU TYR ASP PRO THR ILE GLU ASP SEQRES 4 A 170 SER TYR ARG LYS GLN VAL VAL ILE ASP GLY GLU THR CYS SEQRES 5 A 170 LEU LEU ASP ILE LEU ASP THR ALA GLY GLN GLU GLU TYR SEQRES 6 A 170 SER ALA MET ARG ASP GLN TYR MET ARG THR GLY GLU GLY SEQRES 7 A 170 PHE LEU CYS VAL PHE ALA ILE ASN ASN THR LYS SER PHE SEQRES 8 A 170 GLU ASP ILE HIS HIS TYR ARG GLU GLN ILE LYS ARG VAL SEQRES 9 A 170 LYS ASP SER GLU ASP VAL PRO MET VAL LEU VAL GLY ASN SEQRES 10 A 170 LYS CYS ASP LEU PRO SER ARG THR VAL ASP THR LYS GLN SEQRES 11 A 170 ALA GLN ASP LEU ALA ARG SER TYR GLY ILE PRO PHE ILE SEQRES 12 A 170 GLU THR SER ALA LYS THR ARG GLN GLY VAL GLU ASP ALA SEQRES 13 A 170 PHE TYR THR LEU VAL ARG GLU ILE ARG GLN TYR ARG LEU SEQRES 14 A 170 LYS SEQRES 1 B 170 GLY MET THR GLU TYR LYS LEU VAL VAL VAL GLY ALA GLY SEQRES 2 B 170 GLY VAL GLY LYS SER ALA LEU THR ILE GLN LEU ILE GLN SEQRES 3 B 170 ASN HIS PHE VAL ASP GLU TYR ASP PRO THR ILE GLU ASP SEQRES 4 B 170 SER TYR ARG LYS GLN VAL VAL ILE ASP GLY GLU THR CYS SEQRES 5 B 170 LEU LEU ASP ILE LEU ASP THR ALA GLY GLN GLU GLU TYR SEQRES 6 B 170 SER ALA MET ARG ASP GLN TYR MET ARG THR GLY GLU GLY SEQRES 7 B 170 PHE LEU CYS VAL PHE ALA ILE ASN ASN THR LYS SER PHE SEQRES 8 B 170 GLU ASP ILE HIS HIS TYR ARG GLU GLN ILE LYS ARG VAL SEQRES 9 B 170 LYS ASP SER GLU ASP VAL PRO MET VAL LEU VAL GLY ASN SEQRES 10 B 170 LYS CYS ASP LEU PRO SER ARG THR VAL ASP THR LYS GLN SEQRES 11 B 170 ALA GLN ASP LEU ALA ARG SER TYR GLY ILE PRO PHE ILE SEQRES 12 B 170 GLU THR SER ALA LYS THR ARG GLN GLY VAL GLU ASP ALA SEQRES 13 B 170 PHE TYR THR LEU VAL ARG GLU ILE ARG GLN TYR ARG LEU SEQRES 14 B 170 LYS HET GDP A 201 40 HET MG A 202 1 HET GDP B 201 40 HET MG B 202 1 HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 3 GDP 2(C10 H15 N5 O11 P2) FORMUL 4 MG 2(MG 2+) FORMUL 7 HOH *348(H2 O) HELIX 1 AA1 GLY A 15 ASN A 26 1 12 HELIX 2 AA2 SER A 65 GLY A 75 1 11 HELIX 3 AA3 ASN A 86 ASP A 92 1 7 HELIX 4 AA4 ASP A 92 ASP A 105 1 14 HELIX 5 AA5 ASP A 126 GLY A 138 1 13 HELIX 6 AA6 GLY A 151 LEU A 168 1 18 HELIX 7 AA7 GLY B 15 ASN B 26 1 12 HELIX 8 AA8 ASN B 86 ASP B 92 1 7 HELIX 9 AA9 ASP B 92 ASP B 105 1 14 HELIX 10 AB1 ASP B 126 GLY B 138 1 13 HELIX 11 AB2 GLY B 151 LEU B 168 1 18 SHEET 1 AA1 6 ASP A 38 ILE A 46 0 SHEET 2 AA1 6 GLU A 49 ASP A 57 -1 O LEU A 53 N LYS A 42 SHEET 3 AA1 6 GLU A 3 GLY A 10 1 N VAL A 8 O LEU A 56 SHEET 4 AA1 6 GLY A 77 ALA A 83 1 O LEU A 79 N VAL A 9 SHEET 5 AA1 6 MET A 111 ASN A 116 1 O ASN A 116 N PHE A 82 SHEET 6 AA1 6 PHE A 141 GLU A 143 1 O ILE A 142 N LEU A 113 SHEET 1 AA2 6 ASP B 38 ILE B 46 0 SHEET 2 AA2 6 GLU B 49 ASP B 57 -1 O ILE B 55 N TYR B 40 SHEET 3 AA2 6 THR B 2 GLY B 10 1 N LEU B 6 O LEU B 56 SHEET 4 AA2 6 GLY B 77 ALA B 83 1 O LEU B 79 N VAL B 9 SHEET 5 AA2 6 MET B 111 ASN B 116 1 O ASN B 116 N PHE B 82 SHEET 6 AA2 6 PHE B 141 GLU B 143 1 O ILE B 142 N LEU B 113 LINK OG SER A 17 MG MG A 202 1555 1555 2.11 LINK O2B GDP A 201 MG MG A 202 1555 1555 2.05 LINK MG MG A 202 O HOH A 334 1555 1555 2.10 LINK MG MG A 202 O HOH A 348 1555 1555 2.08 LINK MG MG A 202 O HOH A 366 1555 1555 2.12 LINK MG MG A 202 O HOH A 372 1555 1555 2.15 LINK OG SER B 17 MG MG B 202 1555 1555 2.15 LINK O2B GDP B 201 MG MG B 202 1555 1555 2.14 LINK MG MG B 202 O HOH B 328 1555 1555 2.16 LINK MG MG B 202 O HOH B 330 1555 1555 2.09 LINK MG MG B 202 O HOH B 362 1555 1555 2.11 LINK MG MG B 202 O HOH B 364 1555 1555 2.10 CRYST1 84.779 84.779 41.735 90.00 90.00 120.00 P 3 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011795 0.006810 0.000000 0.00000 SCALE2 0.000000 0.013620 0.000000 0.00000 SCALE3 0.000000 0.000000 0.023961 0.00000