HEADER HYDROLASE 21-JUN-23 8T7Q TITLE IDENTIFICATION OF GDC-1971 (RLY-1971), A SHP2 INHIBITOR DESIGNED FOR TITLE 2 THE TREATMENT OF SOLID TUMORS COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROSINE-PROTEIN PHOSPHATASE NON-RECEPTOR TYPE 11; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PROTEIN-TYROSINE PHOSPHATASE 1D,PTP-1D,PROTEIN-TYROSINE COMPND 5 PHOSPHATASE 2C,PTP-2C,SH-PTP2,SHP2,SH-PTP3; COMPND 6 EC: 3.1.3.48; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PTPN11, PTP2C, SHPTP2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PHOSPHATASE, TUMOR TARGET, INHIBITOR, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.TANG,V.NGUYEN,J.D.WILBUR REVDAT 2 25-OCT-23 8T7Q 1 JRNL REVDAT 1 11-OCT-23 8T7Q 0 JRNL AUTH A.M.TAYLOR,B.R.WILLIAMS,F.GIORDANETTO,E.H.KELLEY, JRNL AUTH 2 A.LESCARBEAU,K.SHORTSLEEVES,Y.TANG,W.P.WALTERS,A.ARRAZATE, JRNL AUTH 3 C.BOWMAN,E.BROPHY,E.W.CHAN,G.DESHMUKH,J.B.GREISMAN, JRNL AUTH 4 T.L.HUNSAKER,D.R.KIPP,P.SAENZ LOPEZ-LARROCHA,D.MADDALO, JRNL AUTH 5 I.J.MARTIN,P.MARAGAKIS,M.MERCHANT,M.MURCKO,H.NISONOFF, JRNL AUTH 6 V.NGUYEN,V.NGUYEN,O.OROZCO,C.OWEN,L.PIERCE,M.SCHMIDT, JRNL AUTH 7 D.E.SHAW,S.SMITH,E.THERRIEN,J.C.TRAN,J.WATTERS,N.J.WATERS, JRNL AUTH 8 J.WILBUR,L.WILLMORE JRNL TITL IDENTIFICATION OF GDC-1971 (RLY-1971), A SHP2 INHIBITOR JRNL TITL 2 DESIGNED FOR THE TREATMENT OF SOLID TUMORS. JRNL REF J.MED.CHEM. V. 66 13384 2023 JRNL REFN ISSN 0022-2623 JRNL PMID 37774359 JRNL DOI 10.1021/ACS.JMEDCHEM.3C00483 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 55.40 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.2 REMARK 3 NUMBER OF REFLECTIONS : 56960 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.262 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.930 REMARK 3 FREE R VALUE TEST SET COUNT : 2808 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 55.4000 - 5.6900 0.99 2939 147 0.1905 0.2079 REMARK 3 2 5.6900 - 4.5200 1.00 2956 143 0.1737 0.2125 REMARK 3 3 4.5200 - 3.9500 1.00 2946 153 0.1731 0.2438 REMARK 3 4 3.9500 - 3.5900 0.88 2567 147 0.1866 0.2300 REMARK 3 5 3.5900 - 3.3300 0.75 2229 107 0.2075 0.2300 REMARK 3 6 3.3300 - 3.1300 1.00 2939 146 0.2147 0.3070 REMARK 3 7 3.1300 - 2.9800 1.00 2900 156 0.2201 0.2807 REMARK 3 8 2.9800 - 2.8500 1.00 2902 166 0.2362 0.3109 REMARK 3 9 2.8500 - 2.7400 1.00 2955 146 0.2303 0.2949 REMARK 3 10 2.7400 - 2.6400 0.50 1461 89 0.2275 0.3589 REMARK 3 11 2.6400 - 2.5600 1.00 2903 163 0.2235 0.2874 REMARK 3 12 2.5600 - 2.4900 1.00 2945 153 0.2206 0.2931 REMARK 3 13 2.4900 - 2.4200 1.00 2871 146 0.2344 0.3102 REMARK 3 14 2.4200 - 2.3600 1.00 2966 158 0.2250 0.2917 REMARK 3 15 2.3600 - 2.3100 1.00 2929 135 0.2301 0.2946 REMARK 3 16 2.3100 - 2.2600 1.00 2946 154 0.2279 0.3131 REMARK 3 17 2.2600 - 2.2100 0.34 981 56 0.2271 0.3122 REMARK 3 18 2.2100 - 2.1700 1.00 2939 134 0.2267 0.3191 REMARK 3 19 2.1700 - 2.1300 1.00 2943 151 0.2428 0.3119 REMARK 3 20 2.1300 - 2.1000 1.00 2935 158 0.2341 0.3019 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.278 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.043 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 33.54 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.96 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 8118 REMARK 3 ANGLE : 1.084 10966 REMARK 3 CHIRALITY : 0.059 1180 REMARK 3 PLANARITY : 0.010 1416 REMARK 3 DIHEDRAL : 6.766 1090 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8T7Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-JUN-23. REMARK 100 THE DEPOSITION ID IS D_1000275362. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-JUL-22 REMARK 200 TEMPERATURE (KELVIN) : 101 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 56960 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 55.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.2 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : 0.05470 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.4500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 19% PEG 3350,100 MM TRIS-HCL (PH 8.5), REMARK 280 300 MM AMMONIUM SULFATE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 106.44200 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 LYS A 35 REMARK 465 SER A 36 REMARK 465 ASN A 37 REMARK 465 PRO A 38 REMARK 465 LYS A 91 REMARK 465 ASN A 92 REMARK 465 GLY A 93 REMARK 465 ASP A 156 REMARK 465 LYS A 157 REMARK 465 GLY A 158 REMARK 465 GLU A 159 REMARK 465 SER A 160 REMARK 465 ALA A 237 REMARK 465 GLU A 238 REMARK 465 THR A 239 REMARK 465 THR A 240 REMARK 465 ASP A 241 REMARK 465 LYS A 242 REMARK 465 VAL A 243 REMARK 465 LYS A 244 REMARK 465 PHE A 314 REMARK 465 GLU A 315 REMARK 465 THR A 316 REMARK 465 LYS A 317 REMARK 465 CYS A 318 REMARK 465 ASN A 319 REMARK 465 ASN A 320 REMARK 465 SER A 321 REMARK 465 LYS A 322 REMARK 465 PRO A 323 REMARK 465 LYS A 324 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 GLU B 90 REMARK 465 LYS B 91 REMARK 465 ASN B 92 REMARK 465 GLY B 93 REMARK 465 ASP B 156 REMARK 465 LYS B 157 REMARK 465 GLY B 158 REMARK 465 GLU B 159 REMARK 465 SER B 160 REMARK 465 ASN B 161 REMARK 465 LEU B 236 REMARK 465 ALA B 237 REMARK 465 GLU B 238 REMARK 465 THR B 239 REMARK 465 THR B 240 REMARK 465 ASP B 241 REMARK 465 LYS B 242 REMARK 465 VAL B 243 REMARK 465 LYS B 244 REMARK 465 GLN B 245 REMARK 465 GLY B 295 REMARK 465 ASP B 296 REMARK 465 PRO B 297 REMARK 465 ASN B 298 REMARK 465 GLU B 299 REMARK 465 PRO B 300 REMARK 465 GLU B 313 REMARK 465 PHE B 314 REMARK 465 GLU B 315 REMARK 465 THR B 316 REMARK 465 LYS B 317 REMARK 465 CYS B 318 REMARK 465 ASN B 319 REMARK 465 ASN B 320 REMARK 465 SER B 321 REMARK 465 LYS B 322 REMARK 465 PRO B 323 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 120 CG CD CE NZ REMARK 470 GLU A 123 CG CD OE1 OE2 REMARK 470 GLU A 299 CG CD OE1 OE2 REMARK 470 LEU B 88 CG CD1 CD2 REMARK 470 LYS B 89 CG CD CE NZ REMARK 470 LEU B 177 CG CD1 CD2 REMARK 470 LYS B 235 CG CD CE NZ REMARK 470 HIS B 426 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLU A 123 OG1 THR A 127 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 333 CB CYS A 333 SG -0.106 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 6 1.92 -66.88 REMARK 500 TYR A 62 168.51 177.26 REMARK 500 GLU A 83 -60.22 -108.75 REMARK 500 GLN A 87 80.99 31.34 REMARK 500 LEU A 117 122.89 -172.05 REMARK 500 LEU A 177 15.35 58.59 REMARK 500 TYR A 375 -7.28 78.83 REMARK 500 LYS A 389 138.19 -179.34 REMARK 500 GLN A 408 81.23 -151.45 REMARK 500 ASN A 410 -8.69 100.22 REMARK 500 CYS A 459 -120.01 -129.07 REMARK 500 SER A 460 -69.24 -93.46 REMARK 500 ASP A 485 58.07 -93.54 REMARK 500 ASP A 485 58.16 -93.73 REMARK 500 VAL A 505 112.62 78.74 REMARK 500 LYS B 35 -43.15 74.54 REMARK 500 TYR B 62 167.25 178.61 REMARK 500 GLU B 83 -73.03 -118.65 REMARK 500 HIS B 85 179.17 62.08 REMARK 500 LEU B 117 129.82 -178.52 REMARK 500 LEU B 177 15.91 56.70 REMARK 500 ALA B 307 147.96 -171.32 REMARK 500 CYS B 367 128.28 -172.78 REMARK 500 TYR B 375 -7.76 74.18 REMARK 500 CYS B 459 -116.24 -123.35 REMARK 500 SER B 460 -72.93 -100.67 REMARK 500 VAL B 505 111.09 80.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 836 DISTANCE = 6.65 ANGSTROMS DBREF 8T7Q A 1 525 UNP Q06124 PTN11_HUMAN 1 525 DBREF 8T7Q B 1 525 UNP Q06124 PTN11_HUMAN 1 525 SEQADV 8T7Q SER A 0 UNP Q06124 EXPRESSION TAG SEQADV 8T7Q SER B 0 UNP Q06124 EXPRESSION TAG SEQRES 1 A 526 SER MET THR SER ARG ARG TRP PHE HIS PRO ASN ILE THR SEQRES 2 A 526 GLY VAL GLU ALA GLU ASN LEU LEU LEU THR ARG GLY VAL SEQRES 3 A 526 ASP GLY SER PHE LEU ALA ARG PRO SER LYS SER ASN PRO SEQRES 4 A 526 GLY ASP PHE THR LEU SER VAL ARG ARG ASN GLY ALA VAL SEQRES 5 A 526 THR HIS ILE LYS ILE GLN ASN THR GLY ASP TYR TYR ASP SEQRES 6 A 526 LEU TYR GLY GLY GLU LYS PHE ALA THR LEU ALA GLU LEU SEQRES 7 A 526 VAL GLN TYR TYR MET GLU HIS HIS GLY GLN LEU LYS GLU SEQRES 8 A 526 LYS ASN GLY ASP VAL ILE GLU LEU LYS TYR PRO LEU ASN SEQRES 9 A 526 CYS ALA ASP PRO THR SER GLU ARG TRP PHE HIS GLY HIS SEQRES 10 A 526 LEU SER GLY LYS GLU ALA GLU LYS LEU LEU THR GLU LYS SEQRES 11 A 526 GLY LYS HIS GLY SER PHE LEU VAL ARG GLU SER GLN SER SEQRES 12 A 526 HIS PRO GLY ASP PHE VAL LEU SER VAL ARG THR GLY ASP SEQRES 13 A 526 ASP LYS GLY GLU SER ASN ASP GLY LYS SER LYS VAL THR SEQRES 14 A 526 HIS VAL MET ILE ARG CYS GLN GLU LEU LYS TYR ASP VAL SEQRES 15 A 526 GLY GLY GLY GLU ARG PHE ASP SER LEU THR ASP LEU VAL SEQRES 16 A 526 GLU HIS TYR LYS LYS ASN PRO MET VAL GLU THR LEU GLY SEQRES 17 A 526 THR VAL LEU GLN LEU LYS GLN PRO LEU ASN THR THR ARG SEQRES 18 A 526 ILE ASN ALA ALA GLU ILE GLU SER ARG VAL ARG GLU LEU SEQRES 19 A 526 SER LYS LEU ALA GLU THR THR ASP LYS VAL LYS GLN GLY SEQRES 20 A 526 PHE TRP GLU GLU PHE GLU THR LEU GLN GLN GLN GLU CYS SEQRES 21 A 526 LYS LEU LEU TYR SER ARG LYS GLU GLY GLN ARG GLN GLU SEQRES 22 A 526 ASN LYS ASN LYS ASN ARG TYR LYS ASN ILE LEU PRO PHE SEQRES 23 A 526 ASP HIS THR ARG VAL VAL LEU HIS ASP GLY ASP PRO ASN SEQRES 24 A 526 GLU PRO VAL SER ASP TYR ILE ASN ALA ASN ILE ILE MET SEQRES 25 A 526 PRO GLU PHE GLU THR LYS CYS ASN ASN SER LYS PRO LYS SEQRES 26 A 526 LYS SER TYR ILE ALA THR GLN GLY CYS LEU GLN ASN THR SEQRES 27 A 526 VAL ASN ASP PHE TRP ARG MET VAL PHE GLN GLU ASN SER SEQRES 28 A 526 ARG VAL ILE VAL MET THR THR LYS GLU VAL GLU ARG GLY SEQRES 29 A 526 LYS SER LYS CYS VAL LYS TYR TRP PRO ASP GLU TYR ALA SEQRES 30 A 526 LEU LYS GLU TYR GLY VAL MET ARG VAL ARG ASN VAL LYS SEQRES 31 A 526 GLU SER ALA ALA HIS ASP TYR THR LEU ARG GLU LEU LYS SEQRES 32 A 526 LEU SER LYS VAL GLY GLN GLY ASN THR GLU ARG THR VAL SEQRES 33 A 526 TRP GLN TYR HIS PHE ARG THR TRP PRO ASP HIS GLY VAL SEQRES 34 A 526 PRO SER ASP PRO GLY GLY VAL LEU ASP PHE LEU GLU GLU SEQRES 35 A 526 VAL HIS HIS LYS GLN GLU SER ILE MET ASP ALA GLY PRO SEQRES 36 A 526 VAL VAL VAL HIS CYS SER ALA GLY ILE GLY ARG THR GLY SEQRES 37 A 526 THR PHE ILE VAL ILE ASP ILE LEU ILE ASP ILE ILE ARG SEQRES 38 A 526 GLU LYS GLY VAL ASP CYS ASP ILE ASP VAL PRO LYS THR SEQRES 39 A 526 ILE GLN MET VAL ARG SER GLN ARG SER GLY MET VAL GLN SEQRES 40 A 526 THR GLU ALA GLN TYR ARG PHE ILE TYR MET ALA VAL GLN SEQRES 41 A 526 HIS TYR ILE GLU THR LEU SEQRES 1 B 526 SER MET THR SER ARG ARG TRP PHE HIS PRO ASN ILE THR SEQRES 2 B 526 GLY VAL GLU ALA GLU ASN LEU LEU LEU THR ARG GLY VAL SEQRES 3 B 526 ASP GLY SER PHE LEU ALA ARG PRO SER LYS SER ASN PRO SEQRES 4 B 526 GLY ASP PHE THR LEU SER VAL ARG ARG ASN GLY ALA VAL SEQRES 5 B 526 THR HIS ILE LYS ILE GLN ASN THR GLY ASP TYR TYR ASP SEQRES 6 B 526 LEU TYR GLY GLY GLU LYS PHE ALA THR LEU ALA GLU LEU SEQRES 7 B 526 VAL GLN TYR TYR MET GLU HIS HIS GLY GLN LEU LYS GLU SEQRES 8 B 526 LYS ASN GLY ASP VAL ILE GLU LEU LYS TYR PRO LEU ASN SEQRES 9 B 526 CYS ALA ASP PRO THR SER GLU ARG TRP PHE HIS GLY HIS SEQRES 10 B 526 LEU SER GLY LYS GLU ALA GLU LYS LEU LEU THR GLU LYS SEQRES 11 B 526 GLY LYS HIS GLY SER PHE LEU VAL ARG GLU SER GLN SER SEQRES 12 B 526 HIS PRO GLY ASP PHE VAL LEU SER VAL ARG THR GLY ASP SEQRES 13 B 526 ASP LYS GLY GLU SER ASN ASP GLY LYS SER LYS VAL THR SEQRES 14 B 526 HIS VAL MET ILE ARG CYS GLN GLU LEU LYS TYR ASP VAL SEQRES 15 B 526 GLY GLY GLY GLU ARG PHE ASP SER LEU THR ASP LEU VAL SEQRES 16 B 526 GLU HIS TYR LYS LYS ASN PRO MET VAL GLU THR LEU GLY SEQRES 17 B 526 THR VAL LEU GLN LEU LYS GLN PRO LEU ASN THR THR ARG SEQRES 18 B 526 ILE ASN ALA ALA GLU ILE GLU SER ARG VAL ARG GLU LEU SEQRES 19 B 526 SER LYS LEU ALA GLU THR THR ASP LYS VAL LYS GLN GLY SEQRES 20 B 526 PHE TRP GLU GLU PHE GLU THR LEU GLN GLN GLN GLU CYS SEQRES 21 B 526 LYS LEU LEU TYR SER ARG LYS GLU GLY GLN ARG GLN GLU SEQRES 22 B 526 ASN LYS ASN LYS ASN ARG TYR LYS ASN ILE LEU PRO PHE SEQRES 23 B 526 ASP HIS THR ARG VAL VAL LEU HIS ASP GLY ASP PRO ASN SEQRES 24 B 526 GLU PRO VAL SER ASP TYR ILE ASN ALA ASN ILE ILE MET SEQRES 25 B 526 PRO GLU PHE GLU THR LYS CYS ASN ASN SER LYS PRO LYS SEQRES 26 B 526 LYS SER TYR ILE ALA THR GLN GLY CYS LEU GLN ASN THR SEQRES 27 B 526 VAL ASN ASP PHE TRP ARG MET VAL PHE GLN GLU ASN SER SEQRES 28 B 526 ARG VAL ILE VAL MET THR THR LYS GLU VAL GLU ARG GLY SEQRES 29 B 526 LYS SER LYS CYS VAL LYS TYR TRP PRO ASP GLU TYR ALA SEQRES 30 B 526 LEU LYS GLU TYR GLY VAL MET ARG VAL ARG ASN VAL LYS SEQRES 31 B 526 GLU SER ALA ALA HIS ASP TYR THR LEU ARG GLU LEU LYS SEQRES 32 B 526 LEU SER LYS VAL GLY GLN GLY ASN THR GLU ARG THR VAL SEQRES 33 B 526 TRP GLN TYR HIS PHE ARG THR TRP PRO ASP HIS GLY VAL SEQRES 34 B 526 PRO SER ASP PRO GLY GLY VAL LEU ASP PHE LEU GLU GLU SEQRES 35 B 526 VAL HIS HIS LYS GLN GLU SER ILE MET ASP ALA GLY PRO SEQRES 36 B 526 VAL VAL VAL HIS CYS SER ALA GLY ILE GLY ARG THR GLY SEQRES 37 B 526 THR PHE ILE VAL ILE ASP ILE LEU ILE ASP ILE ILE ARG SEQRES 38 B 526 GLU LYS GLY VAL ASP CYS ASP ILE ASP VAL PRO LYS THR SEQRES 39 B 526 ILE GLN MET VAL ARG SER GLN ARG SER GLY MET VAL GLN SEQRES 40 B 526 THR GLU ALA GLN TYR ARG PHE ILE TYR MET ALA VAL GLN SEQRES 41 B 526 HIS TYR ILE GLU THR LEU HET ZH5 A 601 44 HET ZH5 B 601 44 HETNAM ZH5 1-{3-[(2-CHLOROPHENYL)SULFANYL]-1H-PYRAZOLO[3,4- HETNAM 2 ZH5 B]PYRAZIN-6-YL}-4-METHYLPIPERIDIN-4-AMINE FORMUL 3 ZH5 2(C17 H19 CL N6 S) FORMUL 5 HOH *313(H2 O) HELIX 1 AA1 THR A 12 ARG A 23 1 12 HELIX 2 AA2 THR A 73 HIS A 84 1 12 HELIX 3 AA3 SER A 118 GLY A 130 1 13 HELIX 4 AA4 SER A 189 ASN A 200 1 12 HELIX 5 AA5 GLU A 225 LYS A 235 1 11 HELIX 6 AA6 GLY A 246 GLN A 256 1 11 HELIX 7 AA7 GLN A 257 LEU A 262 5 6 HELIX 8 AA8 ARG A 265 ARG A 270 1 6 HELIX 9 AA9 ARG A 270 ASN A 275 1 6 HELIX 10 AB1 THR A 337 ASN A 349 1 13 HELIX 11 AB2 PRO A 432 SER A 448 1 17 HELIX 12 AB3 ILE A 463 GLY A 483 1 21 HELIX 13 AB4 ASP A 489 SER A 499 1 11 HELIX 14 AB5 THR A 507 LEU A 525 1 19 HELIX 15 AB6 THR B 12 GLY B 24 1 13 HELIX 16 AB7 THR B 73 HIS B 84 1 12 HELIX 17 AB8 SER B 118 GLY B 130 1 13 HELIX 18 AB9 SER B 189 ASN B 200 1 12 HELIX 19 AC1 GLU B 225 SER B 234 1 10 HELIX 20 AC2 PHE B 247 GLN B 257 1 11 HELIX 21 AC3 GLU B 258 LEU B 261 5 4 HELIX 22 AC4 ARG B 265 ARG B 270 1 6 HELIX 23 AC5 ARG B 270 ASN B 275 1 6 HELIX 24 AC6 LEU B 334 ASN B 336 5 3 HELIX 25 AC7 THR B 337 GLU B 348 1 12 HELIX 26 AC8 PRO B 432 ILE B 449 1 18 HELIX 27 AC9 GLY B 464 GLY B 483 1 20 HELIX 28 AD1 ASP B 489 SER B 499 1 11 HELIX 29 AD2 THR B 507 THR B 524 1 18 SHEET 1 AA1 6 LYS A 70 PHE A 71 0 SHEET 2 AA1 6 TYR A 63 LEU A 65 -1 N TYR A 63 O PHE A 71 SHEET 3 AA1 6 ALA A 50 GLN A 57 -1 N GLN A 57 O ASP A 64 SHEET 4 AA1 6 ASP A 40 ARG A 47 -1 N PHE A 41 O ILE A 56 SHEET 5 AA1 6 SER A 28 PRO A 33 -1 N LEU A 30 O SER A 44 SHEET 6 AA1 6 TYR A 100 PRO A 101 1 O TYR A 100 N PHE A 29 SHEET 1 AA2 5 LYS A 178 ASP A 180 0 SHEET 2 AA2 5 LYS A 166 GLN A 175 -1 N ARG A 173 O ASP A 180 SHEET 3 AA2 5 PHE A 147 THR A 153 -1 N PHE A 147 O ILE A 172 SHEET 4 AA2 5 SER A 134 GLU A 139 -1 N ARG A 138 O VAL A 148 SHEET 5 AA2 5 GLN A 214 PRO A 215 1 O GLN A 214 N PHE A 135 SHEET 1 AA3 2 MET A 202 VAL A 203 0 SHEET 2 AA3 2 VAL A 209 LEU A 210 -1 O LEU A 210 N MET A 202 SHEET 1 AA4 2 ILE A 221 ASN A 222 0 SHEET 2 AA4 2 ASP A 487 ILE A 488 -1 O ILE A 488 N ILE A 221 SHEET 1 AA5 9 ARG A 289 VAL A 291 0 SHEET 2 AA5 9 TYR A 304 ILE A 310 -1 O ALA A 307 N VAL A 290 SHEET 3 AA5 9 TYR A 327 THR A 330 -1 O TYR A 327 N ILE A 310 SHEET 4 AA5 9 VAL A 455 HIS A 458 1 O VAL A 457 N ILE A 328 SHEET 5 AA5 9 VAL A 352 MET A 355 1 N VAL A 354 O VAL A 456 SHEET 6 AA5 9 GLN A 408 PHE A 420 1 O TYR A 418 N ILE A 353 SHEET 7 AA5 9 TYR A 396 LYS A 405 -1 N THR A 397 O HIS A 419 SHEET 8 AA5 9 MET A 383 ALA A 392 -1 N LYS A 389 O GLU A 400 SHEET 9 AA5 9 LEU A 377 TYR A 380 -1 N TYR A 380 O MET A 383 SHEET 1 AA6 2 VAL A 360 GLU A 361 0 SHEET 2 AA6 2 LYS A 364 SER A 365 -1 O LYS A 364 N GLU A 361 SHEET 1 AA7 6 LYS B 70 PHE B 71 0 SHEET 2 AA7 6 TYR B 63 LEU B 65 -1 N TYR B 63 O PHE B 71 SHEET 3 AA7 6 ALA B 50 GLN B 57 -1 N GLN B 57 O ASP B 64 SHEET 4 AA7 6 PHE B 41 ARG B 47 -1 N LEU B 43 O ILE B 54 SHEET 5 AA7 6 SER B 28 PRO B 33 -1 N LEU B 30 O SER B 44 SHEET 6 AA7 6 TYR B 100 PRO B 101 1 O TYR B 100 N PHE B 29 SHEET 1 AA8 5 LYS B 178 ASP B 180 0 SHEET 2 AA8 5 LYS B 166 GLN B 175 -1 N GLN B 175 O LYS B 178 SHEET 3 AA8 5 PHE B 147 THR B 153 -1 N LEU B 149 O VAL B 170 SHEET 4 AA8 5 SER B 134 GLU B 139 -1 N ARG B 138 O VAL B 148 SHEET 5 AA8 5 GLN B 214 PRO B 215 1 O GLN B 214 N PHE B 135 SHEET 1 AA9 2 MET B 202 VAL B 203 0 SHEET 2 AA9 2 VAL B 209 LEU B 210 -1 O LEU B 210 N MET B 202 SHEET 1 AB1 2 ILE B 221 ASN B 222 0 SHEET 2 AB1 2 ASP B 487 ILE B 488 -1 O ILE B 488 N ILE B 221 SHEET 1 AB2 9 ARG B 289 VAL B 291 0 SHEET 2 AB2 9 TYR B 304 ILE B 310 -1 O ALA B 307 N VAL B 290 SHEET 3 AB2 9 TYR B 327 THR B 330 -1 O TYR B 327 N ILE B 310 SHEET 4 AB2 9 VAL B 455 HIS B 458 1 O VAL B 457 N ILE B 328 SHEET 5 AB2 9 VAL B 352 MET B 355 1 N VAL B 354 O VAL B 456 SHEET 6 AB2 9 ARG B 413 PHE B 420 1 O TYR B 418 N ILE B 353 SHEET 7 AB2 9 TYR B 396 LYS B 405 -1 N LEU B 401 O VAL B 415 SHEET 8 AB2 9 MET B 383 ALA B 392 -1 N VAL B 388 O GLU B 400 SHEET 9 AB2 9 LEU B 377 TYR B 380 -1 N TYR B 380 O MET B 383 SHEET 1 AB3 2 VAL B 360 GLU B 361 0 SHEET 2 AB3 2 LYS B 364 SER B 365 -1 O LYS B 364 N GLU B 361 CRYST1 45.788 212.884 55.736 90.00 96.31 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021840 0.000000 0.002415 0.00000 SCALE2 0.000000 0.004697 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018051 0.00000