HEADER VIRUS/DNA 23-JUN-23 8T9C TITLE ZOPHOBAS MORIO BLACK WASTING VIRUS STRAIN UT-MORIO VIRION STRUCTURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: MAJOR CAPSID PROTEIN; COMPND 3 CHAIN: A; COMPND 4 MOL_ID: 2; COMPND 5 MOLECULE: DNA (5'-D(P*CP*G)-3'); COMPND 6 CHAIN: B; COMPND 7 MOL_ID: 3; COMPND 8 MOLECULE: DNA (5'-D(P*CP*AP*GP*GP*CP*CP*AP*A)-3'); COMPND 9 CHAIN: C; COMPND 10 MOL_ID: 4; COMPND 11 MOLECULE: DNA (5'-D(P*CP*GP*A)-3'); COMPND 12 CHAIN: D SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ZOPHOBAS MORIO; SOURCE 3 ORGANISM_TAXID: 2755281; SOURCE 4 MOL_ID: 2; SOURCE 5 ORGANISM_SCIENTIFIC: ZOPHOBAS MORIO; SOURCE 6 ORGANISM_TAXID: 2755281; SOURCE 7 MOL_ID: 3; SOURCE 8 ORGANISM_SCIENTIFIC: ZOPHOBAS MORIO; SOURCE 9 ORGANISM_TAXID: 2755281; SOURCE 10 MOL_ID: 4; SOURCE 11 ORGANISM_SCIENTIFIC: ZOPHOBAS MORIO; SOURCE 12 ORGANISM_TAXID: 2755281 KEYWDS CAPSID, VIRION, PARVOVIRUS, DENSOVIRUS, INVERTEBRATE, INSECT, KEYWDS 2 PATHOGEN, SSDNA, VIRUS, VIRUS-DNA COMPLEX EXPDTA ELECTRON MICROSCOPY AUTHOR J.J.PENZES,J.T.KAELBER REVDAT 1 23-AUG-23 8T9C 0 JRNL AUTH J.J.PENZES,M.HOLM,E.FIRLAR,J.T.KAELBER JRNL TITL SEQUENCING-FREE DISCOVERY BY CRYO-EM OF A PATHOGENIC JRNL TITL 2 PARVOVIRUS CAUSING MASS MORTALITY OF FARMED BEETLES JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : CISTEM, SERIALEM, CISTEM, RELION, REMARK 3 CISTEM, RELION REMARK 3 RECONSTRUCTION SCHEMA : FOURIER SPACE REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : AB INITIO MODEL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 2.700 REMARK 3 NUMBER OF PARTICLES : 42219 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 8T9C COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-JUN-23. REMARK 100 THE DEPOSITION ID IS D_1000275502. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : ZOPHOBAS MORIO DENSOVIRUS REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 2.00 REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.40 REMARK 245 SAMPLE DETAILS : PURIFIED FROM Z. MORIO LARVAE REMARK 245 DISPLAYING SYMPTOMES OF ZOPHOBAS MORIO BLACK WASTING DISEASE REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TALOS ARCTICA REMARK 245 DETECTOR TYPE : GATAN K2 SUMMIT (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 500.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 1200.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.70 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 4316.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 200 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 THE ASSEMBLY REPRESENTED IN THIS ENTRY HAS REGULAR REMARK 300 ICOSAHEDRAL POINT SYMMETRY (SCHOENFLIES SYMBOL = I). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: 240-MERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: 240-MERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.809017 -0.500000 0.309017 452.92000 REMARK 350 BIOMT2 2 -0.500000 0.309017 -0.809017 452.92000 REMARK 350 BIOMT3 2 0.309017 -0.809017 -0.500000 452.92000 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 0.000000 -1.000000 452.92000 REMARK 350 BIOMT3 3 -1.000000 0.000000 0.000000 452.92000 REMARK 350 BIOMT1 4 0.809017 -0.500000 -0.309017 226.46000 REMARK 350 BIOMT2 4 -0.500000 -0.309017 -0.809017 592.87998 REMARK 350 BIOMT3 4 0.309017 0.809017 -0.500000 86.50002 REMARK 350 BIOMT1 5 0.500000 0.309017 -0.809017 226.46000 REMARK 350 BIOMT2 5 -0.309017 -0.809017 -0.500000 592.87998 REMARK 350 BIOMT3 5 -0.809017 0.500000 -0.309017 366.41998 REMARK 350 BIOMT1 6 -0.309017 -0.809017 -0.500000 592.87998 REMARK 350 BIOMT2 6 -0.809017 0.500000 -0.309017 366.41998 REMARK 350 BIOMT3 6 0.500000 0.309017 -0.809017 226.46000 REMARK 350 BIOMT1 7 -0.809017 0.500000 -0.309017 366.41998 REMARK 350 BIOMT2 7 0.500000 0.309017 -0.809017 226.46000 REMARK 350 BIOMT3 7 -0.309017 -0.809017 -0.500000 592.87998 REMARK 350 BIOMT1 8 -0.809017 -0.500000 -0.309017 592.87998 REMARK 350 BIOMT2 8 0.500000 -0.309017 -0.809017 366.41998 REMARK 350 BIOMT3 8 0.309017 -0.809017 0.500000 226.46000 REMARK 350 BIOMT1 9 -0.309017 0.809017 -0.500000 226.46000 REMARK 350 BIOMT2 9 -0.809017 -0.500000 -0.309017 592.87998 REMARK 350 BIOMT3 9 -0.500000 0.309017 0.809017 86.50002 REMARK 350 BIOMT1 10 0.500000 -0.309017 -0.809017 366.41998 REMARK 350 BIOMT2 10 -0.309017 0.809017 -0.500000 226.46000 REMARK 350 BIOMT3 10 0.809017 0.500000 0.309017 -139.95998 REMARK 350 BIOMT1 11 0.000000 0.000000 -1.000000 452.92000 REMARK 350 BIOMT2 11 -1.000000 0.000000 0.000000 452.92000 REMARK 350 BIOMT3 11 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 12 -0.500000 -0.309017 -0.809017 592.87998 REMARK 350 BIOMT2 12 0.309017 0.809017 -0.500000 86.50002 REMARK 350 BIOMT3 12 0.809017 -0.500000 -0.309017 226.46000 REMARK 350 BIOMT1 13 -0.500000 0.309017 -0.809017 452.92000 REMARK 350 BIOMT2 13 0.309017 -0.809017 -0.500000 452.92000 REMARK 350 BIOMT3 13 -0.809017 -0.500000 0.309017 452.92000 REMARK 350 BIOMT1 14 -0.309017 -0.809017 -0.500000 592.87998 REMARK 350 BIOMT2 14 0.809017 -0.500000 0.309017 86.50002 REMARK 350 BIOMT3 14 -0.500000 -0.309017 0.809017 226.46000 REMARK 350 BIOMT1 15 -0.809017 0.500000 -0.309017 366.41998 REMARK 350 BIOMT2 15 -0.500000 -0.309017 0.809017 226.46000 REMARK 350 BIOMT3 15 0.309017 0.809017 0.500000 -139.95998 REMARK 350 BIOMT1 16 0.500000 0.309017 -0.809017 226.46000 REMARK 350 BIOMT2 16 0.309017 0.809017 0.500000 -139.95998 REMARK 350 BIOMT3 16 0.809017 -0.500000 0.309017 86.50002 REMARK 350 BIOMT1 17 -0.500000 0.309017 -0.809017 452.92000 REMARK 350 BIOMT2 17 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT3 17 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 18 0.000000 0.000000 -1.000000 452.92000 REMARK 350 BIOMT2 18 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 18 0.000000 -1.000000 0.000000 452.92000 REMARK 350 BIOMT1 19 -0.500000 -0.309017 -0.809017 592.87998 REMARK 350 BIOMT2 19 -0.309017 -0.809017 0.500000 366.41998 REMARK 350 BIOMT3 19 -0.809017 0.500000 0.309017 226.46000 REMARK 350 BIOMT1 20 0.000000 -1.000000 0.000000 452.92000 REMARK 350 BIOMT2 20 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 20 -1.000000 0.000000 0.000000 452.92000 REMARK 350 BIOMT1 21 -0.809017 0.500000 0.309017 226.46000 REMARK 350 BIOMT2 21 0.500000 0.309017 0.809017 -139.95998 REMARK 350 BIOMT3 21 0.309017 0.809017 -0.500000 86.50002 REMARK 350 BIOMT1 22 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 22 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT3 22 0.309017 -0.809017 -0.500000 452.92000 REMARK 350 BIOMT1 23 -0.309017 0.809017 -0.500000 226.46000 REMARK 350 BIOMT2 23 0.809017 0.500000 0.309017 -139.95998 REMARK 350 BIOMT3 23 0.500000 -0.309017 -0.809017 366.41998 REMARK 350 BIOMT1 24 0.500000 -0.309017 -0.809017 366.41998 REMARK 350 BIOMT2 24 0.309017 -0.809017 0.500000 226.46000 REMARK 350 BIOMT3 24 -0.809017 -0.500000 -0.309017 592.87998 REMARK 350 BIOMT1 25 -0.809017 -0.500000 -0.309017 592.87998 REMARK 350 BIOMT2 25 -0.500000 0.309017 0.809017 86.50002 REMARK 350 BIOMT3 25 -0.309017 0.809017 -0.500000 226.46000 REMARK 350 BIOMT1 26 -0.309017 -0.809017 0.500000 366.41998 REMARK 350 BIOMT2 26 -0.809017 0.500000 0.309017 226.46000 REMARK 350 BIOMT3 26 -0.500000 -0.309017 -0.809017 592.87998 REMARK 350 BIOMT1 27 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT2 27 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 27 -0.500000 0.309017 -0.809017 452.92000 REMARK 350 BIOMT1 28 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 28 0.000000 -1.000000 0.000000 452.92000 REMARK 350 BIOMT3 28 0.000000 0.000000 -1.000000 452.92000 REMARK 350 BIOMT1 29 0.309017 0.809017 -0.500000 86.50002 REMARK 350 BIOMT2 29 0.809017 -0.500000 -0.309017 226.46000 REMARK 350 BIOMT3 29 -0.500000 -0.309017 -0.809017 592.87998 REMARK 350 BIOMT1 30 0.309017 -0.809017 -0.500000 452.92000 REMARK 350 BIOMT2 30 -0.809017 -0.500000 0.309017 452.92000 REMARK 350 BIOMT3 30 -0.500000 0.309017 -0.809017 452.92000 REMARK 350 BIOMT1 31 -1.000000 0.000000 0.000000 452.92000 REMARK 350 BIOMT2 31 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 31 0.000000 0.000000 -1.000000 452.92000 REMARK 350 BIOMT1 32 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 32 -0.500000 0.309017 -0.809017 452.92000 REMARK 350 BIOMT3 32 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT1 33 0.000000 -1.000000 0.000000 452.92000 REMARK 350 BIOMT2 33 0.000000 0.000000 -1.000000 452.92000 REMARK 350 BIOMT3 33 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 34 -0.809017 0.500000 0.309017 226.46000 REMARK 350 BIOMT2 34 -0.500000 -0.309017 -0.809017 592.87998 REMARK 350 BIOMT3 34 -0.309017 -0.809017 0.500000 366.41998 REMARK 350 BIOMT1 35 -0.500000 -0.309017 0.809017 226.46000 REMARK 350 BIOMT2 35 -0.309017 -0.809017 -0.500000 592.87998 REMARK 350 BIOMT3 35 0.809017 -0.500000 0.309017 86.50002 REMARK 350 BIOMT1 36 0.309017 0.809017 0.500000 -139.95998 REMARK 350 BIOMT2 36 -0.809017 0.500000 -0.309017 366.41998 REMARK 350 BIOMT3 36 -0.500000 -0.309017 0.809017 226.46000 REMARK 350 BIOMT1 37 0.809017 -0.500000 0.309017 86.50002 REMARK 350 BIOMT2 37 0.500000 0.309017 -0.809017 226.46000 REMARK 350 BIOMT3 37 0.309017 0.809017 0.500000 -139.95998 REMARK 350 BIOMT1 38 0.809017 0.500000 0.309017 -139.95998 REMARK 350 BIOMT2 38 0.500000 -0.309017 -0.809017 366.41998 REMARK 350 BIOMT3 38 -0.309017 0.809017 -0.500000 226.46000 REMARK 350 BIOMT1 39 0.309017 -0.809017 0.500000 226.46000 REMARK 350 BIOMT2 39 -0.809017 -0.500000 -0.309017 592.87998 REMARK 350 BIOMT3 39 0.500000 -0.309017 -0.809017 366.41998 REMARK 350 BIOMT1 40 -0.500000 0.309017 0.809017 86.50002 REMARK 350 BIOMT2 40 -0.309017 0.809017 -0.500000 226.46000 REMARK 350 BIOMT3 40 -0.809017 -0.500000 -0.309017 592.87998 REMARK 350 BIOMT1 41 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 41 -1.000000 0.000000 0.000000 452.92000 REMARK 350 BIOMT3 41 0.000000 -1.000000 0.000000 452.92000 REMARK 350 BIOMT1 42 0.500000 0.309017 0.809017 -139.95998 REMARK 350 BIOMT2 42 0.309017 0.809017 -0.500000 86.50002 REMARK 350 BIOMT3 42 -0.809017 0.500000 0.309017 226.46000 REMARK 350 BIOMT1 43 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT2 43 0.309017 -0.809017 -0.500000 452.92000 REMARK 350 BIOMT3 43 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 44 0.309017 0.809017 0.500000 -139.95998 REMARK 350 BIOMT2 44 0.809017 -0.500000 0.309017 86.50002 REMARK 350 BIOMT3 44 0.500000 0.309017 -0.809017 226.46000 REMARK 350 BIOMT1 45 0.809017 -0.500000 0.309017 86.50002 REMARK 350 BIOMT2 45 -0.500000 -0.309017 0.809017 226.46000 REMARK 350 BIOMT3 45 -0.309017 -0.809017 -0.500000 592.87998 REMARK 350 BIOMT1 46 -0.500000 -0.309017 0.809017 226.46000 REMARK 350 BIOMT2 46 0.309017 0.809017 0.500000 -139.95998 REMARK 350 BIOMT3 46 -0.809017 0.500000 -0.309017 366.41998 REMARK 350 BIOMT1 47 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT2 47 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT3 47 -0.809017 -0.500000 0.309017 452.92000 REMARK 350 BIOMT1 48 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 48 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 48 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 49 0.500000 0.309017 0.809017 -139.95998 REMARK 350 BIOMT2 49 -0.309017 -0.809017 0.500000 366.41998 REMARK 350 BIOMT3 49 0.809017 -0.500000 -0.309017 226.46000 REMARK 350 BIOMT1 50 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 50 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 50 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 51 0.809017 -0.500000 -0.309017 226.46000 REMARK 350 BIOMT2 51 0.500000 0.309017 0.809017 -139.95998 REMARK 350 BIOMT3 51 -0.309017 -0.809017 0.500000 366.41998 REMARK 350 BIOMT1 52 -0.809017 -0.500000 0.309017 452.92000 REMARK 350 BIOMT2 52 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT3 52 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT1 53 0.309017 -0.809017 0.500000 226.46000 REMARK 350 BIOMT2 53 0.809017 0.500000 0.309017 -139.95998 REMARK 350 BIOMT3 53 -0.500000 0.309017 0.809017 86.50002 REMARK 350 BIOMT1 54 -0.500000 0.309017 0.809017 86.50002 REMARK 350 BIOMT2 54 0.309017 -0.809017 0.500000 226.46000 REMARK 350 BIOMT3 54 0.809017 0.500000 0.309017 -139.95998 REMARK 350 BIOMT1 55 0.809017 0.500000 0.309017 -139.95998 REMARK 350 BIOMT2 55 -0.500000 0.309017 0.809017 86.50002 REMARK 350 BIOMT3 55 0.309017 -0.809017 0.500000 226.46000 REMARK 350 BIOMT1 56 0.309017 0.809017 -0.500000 86.50002 REMARK 350 BIOMT2 56 -0.809017 0.500000 0.309017 226.46000 REMARK 350 BIOMT3 56 0.500000 0.309017 0.809017 -139.95998 REMARK 350 BIOMT1 57 0.309017 -0.809017 -0.500000 452.92000 REMARK 350 BIOMT2 57 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 57 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT1 58 -1.000000 0.000000 0.000000 452.92000 REMARK 350 BIOMT2 58 0.000000 -1.000000 0.000000 452.92000 REMARK 350 BIOMT3 58 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 59 -0.309017 -0.809017 0.500000 366.41998 REMARK 350 BIOMT2 59 0.809017 -0.500000 -0.309017 226.46000 REMARK 350 BIOMT3 59 0.500000 0.309017 0.809017 -139.95998 REMARK 350 BIOMT1 60 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT2 60 -0.809017 -0.500000 0.309017 452.92000 REMARK 350 BIOMT3 60 0.500000 -0.309017 0.809017 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PRO A 2 REMARK 465 ARG A 3 REMARK 465 VAL A 4 REMARK 465 ARG A 5 REMARK 465 PRO A 6 REMARK 465 LEU A 7 REMARK 465 GLY A 8 REMARK 465 PRO A 9 REMARK 465 ASN A 10 REMARK 465 PRO A 11 REMARK 465 GLN A 12 REMARK 465 ASP A 13 REMARK 465 ARG A 14 REMARK 465 PRO A 15 REMARK 465 ASN A 16 REMARK 465 TRP A 17 REMARK 465 ASP A 18 REMARK 465 SER A 19 REMARK 465 MET A 20 REMARK 465 ASN A 21 REMARK 465 ASP A 22 REMARK 465 GLY A 23 REMARK 465 GLN A 24 REMARK 465 ARG A 25 REMARK 465 ARG A 26 REMARK 465 TYR A 27 REMARK 465 ALA A 28 REMARK 465 MET A 29 REMARK 465 GLU A 30 REMARK 465 GLN A 31 REMARK 465 TRP A 32 REMARK 465 ASN A 33 REMARK 465 LEU A 34 REMARK 465 ALA A 35 REMARK 465 ARG A 36 REMARK 465 VAL A 37 REMARK 465 ARG A 38 REMARK 465 ARG A 39 REMARK 465 GLY A 40 REMARK 465 GLU A 41 REMARK 465 TYR A 42 REMARK 465 PHE A 43 REMARK 465 ASP A 44 REMARK 465 PRO A 45 REMARK 465 PRO A 46 REMARK 465 GLY A 47 REMARK 465 ASP A 48 REMARK 465 ASP A 49 REMARK 465 ASP A 50 REMARK 465 LEU A 51 REMARK 465 PRO A 52 REMARK 465 LEU A 53 REMARK 465 THR A 54 REMARK 465 GLN A 55 REMARK 465 ALA A 56 REMARK 465 ASP A 57 REMARK 465 ALA A 58 REMARK 465 ILE A 59 REMARK 465 ASP A 60 REMARK 465 ASN A 61 REMARK 465 PHE A 62 REMARK 465 ASP A 63 REMARK 465 LEU A 64 REMARK 465 ASP A 65 REMARK 465 LEU A 66 REMARK 465 LEU A 67 REMARK 465 GLY A 68 REMARK 465 SER A 69 REMARK 465 PRO A 70 REMARK 465 GLN A 71 REMARK 465 GLU A 72 REMARK 465 ALA A 73 REMARK 465 GLU A 74 REMARK 465 GLN A 75 REMARK 465 PRO A 76 REMARK 465 SER A 77 REMARK 465 GLN A 78 REMARK 465 GLN A 79 REMARK 465 SER A 80 REMARK 465 GLU A 81 REMARK 465 ASP A 82 REMARK 465 GLY A 83 REMARK 465 VAL A 84 REMARK 465 ASP A 85 REMARK 465 ASP A 86 REMARK 465 PHE A 87 REMARK 465 LEU A 88 REMARK 465 GLN A 89 REMARK 465 GLN A 90 REMARK 465 VAL A 91 REMARK 465 ARG A 92 REMARK 465 ASP A 93 REMARK 465 ARG A 94 REMARK 465 GLN A 95 REMARK 465 ASP A 96 REMARK 465 LEU A 97 REMARK 465 ARG A 98 REMARK 465 ASP A 99 REMARK 465 ALA A 100 REMARK 465 GLY A 101 REMARK 465 PRO A 102 REMARK 465 SER A 103 REMARK 465 ASN A 104 REMARK 465 ALA A 105 REMARK 465 PRO A 106 REMARK 465 GLN A 107 REMARK 465 PRO A 108 REMARK 465 ASN A 109 REMARK 465 MET A 110 REMARK 465 ALA A 111 REMARK 465 ASP A 112 REMARK 465 VAL A 113 REMARK 465 GLU A 114 REMARK 465 MET A 115 REMARK 465 ALA A 116 REMARK 465 GLN A 117 REMARK 465 VAL A 118 REMARK 465 SER A 119 REMARK 465 SER A 120 REMARK 465 SER A 121 REMARK 465 SER A 122 REMARK 465 SER A 123 REMARK 465 GLY A 124 REMARK 465 SER A 125 REMARK 465 LYS A 126 REMARK 465 ARG A 127 REMARK 465 GLY A 128 REMARK 465 SER A 129 REMARK 465 ASP A 130 REMARK 465 GLY A 131 REMARK 465 SER A 132 REMARK 465 GLY A 133 REMARK 465 PRO A 134 REMARK 465 PRO A 135 REMARK 465 SER A 136 REMARK 465 LYS A 137 REMARK 465 VAL A 138 REMARK 465 SER A 139 REMARK 465 LYS A 140 REMARK 465 SER A 141 REMARK 465 GLY A 142 REMARK 465 THR A 143 REMARK 465 SER A 144 REMARK 465 LEU A 145 REMARK 465 PRO A 146 REMARK 465 GLY A 147 REMARK 465 THR A 148 REMARK 465 GLY A 149 REMARK 465 GLY A 150 REMARK 465 ASN A 151 REMARK 465 LEU A 152 REMARK 465 ASP A 153 REMARK 465 GLY A 154 REMARK 465 MET A 155 REMARK 465 ALA A 156 REMARK 465 ARG A 157 REMARK 465 GLY A 158 REMARK 465 GLY A 159 REMARK 465 SER A 160 REMARK 465 GLY A 161 REMARK 465 GLU A 162 REMARK 465 GLY A 163 REMARK 465 GLY A 164 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC B 1 O4' - C1' - N1 ANGL. DEV. = 3.5 DEGREES REMARK 500 DG B 2 O4' - C1' - N9 ANGL. DEV. = 3.3 DEGREES REMARK 500 DC C 1 N3 - C2 - O2 ANGL. DEV. = -5.1 DEGREES REMARK 500 DA C 2 O4' - C1' - N9 ANGL. DEV. = 3.1 DEGREES REMARK 500 DA C 2 C4 - C5 - C6 ANGL. DEV. = -3.2 DEGREES REMARK 500 DA C 2 C5 - C6 - N1 ANGL. DEV. = 3.7 DEGREES REMARK 500 DA C 2 N1 - C6 - N6 ANGL. DEV. = -5.5 DEGREES REMARK 500 DA C 2 C3' - O3' - P ANGL. DEV. = 8.5 DEGREES REMARK 500 DC C 5 O4' - C1' - N1 ANGL. DEV. = 2.5 DEGREES REMARK 500 DC C 6 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 DC C 6 N3 - C2 - O2 ANGL. DEV. = -4.5 DEGREES REMARK 500 DA C 7 C3' - C2' - C1' ANGL. DEV. = -5.2 DEGREES REMARK 500 DA C 7 O4' - C1' - N9 ANGL. DEV. = 11.2 DEGREES REMARK 500 DA C 7 C5 - C6 - N1 ANGL. DEV. = 4.0 DEGREES REMARK 500 DA C 8 O4' - C1' - N9 ANGL. DEV. = 6.2 DEGREES REMARK 500 DA C 8 C5 - C6 - N1 ANGL. DEV. = 3.9 DEGREES REMARK 500 DA C 8 N1 - C6 - N6 ANGL. DEV. = -5.6 DEGREES REMARK 500 DC D 2 O4' - C1' - N1 ANGL. DEV. = 9.4 DEGREES REMARK 500 DC D 2 N1 - C2 - O2 ANGL. DEV. = 4.9 DEGREES REMARK 500 DC D 2 N3 - C2 - O2 ANGL. DEV. = -6.2 DEGREES REMARK 500 DA D 4 O4' - C1' - N9 ANGL. DEV. = 3.9 DEGREES REMARK 500 DA D 4 C5 - C6 - N1 ANGL. DEV. = 3.7 DEGREES REMARK 500 DA D 4 N1 - C6 - N6 ANGL. DEV. = -5.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 255 -169.05 -103.95 REMARK 500 ASN A 424 34.27 -96.17 REMARK 500 GLN A 474 -32.06 -39.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 DG C 4 0.08 SIDE CHAIN REMARK 500 DA C 7 0.12 SIDE CHAIN REMARK 500 DG D 3 0.05 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-41106 RELATED DB: EMDB REMARK 900 ZOPHOBAS MORIO BLACK WASTING VIRUS STRAIN UT-MORIO VIRION STRUCTURE DBREF 8T9C A 1 593 PDB 8T9C 8T9C 1 593 DBREF 8T9C B 1 2 PDB 8T9C 8T9C 1 2 DBREF 8T9C C 1 8 PDB 8T9C 8T9C 1 8 DBREF 8T9C D 2 4 PDB 8T9C 8T9C 2 4 SEQRES 1 A 593 MET PRO ARG VAL ARG PRO LEU GLY PRO ASN PRO GLN ASP SEQRES 2 A 593 ARG PRO ASN TRP ASP SER MET ASN ASP GLY GLN ARG ARG SEQRES 3 A 593 TYR ALA MET GLU GLN TRP ASN LEU ALA ARG VAL ARG ARG SEQRES 4 A 593 GLY GLU TYR PHE ASP PRO PRO GLY ASP ASP ASP LEU PRO SEQRES 5 A 593 LEU THR GLN ALA ASP ALA ILE ASP ASN PHE ASP LEU ASP SEQRES 6 A 593 LEU LEU GLY SER PRO GLN GLU ALA GLU GLN PRO SER GLN SEQRES 7 A 593 GLN SER GLU ASP GLY VAL ASP ASP PHE LEU GLN GLN VAL SEQRES 8 A 593 ARG ASP ARG GLN ASP LEU ARG ASP ALA GLY PRO SER ASN SEQRES 9 A 593 ALA PRO GLN PRO ASN MET ALA ASP VAL GLU MET ALA GLN SEQRES 10 A 593 VAL SER SER SER SER SER GLY SER LYS ARG GLY SER ASP SEQRES 11 A 593 GLY SER GLY PRO PRO SER LYS VAL SER LYS SER GLY THR SEQRES 12 A 593 SER LEU PRO GLY THR GLY GLY ASN LEU ASP GLY MET ALA SEQRES 13 A 593 ARG GLY GLY SER GLY GLU GLY GLY ALA THR ALA ILE LEU SEQRES 14 A 593 ARG PRO ILE GLY LEU HIS VAL GLU LYS PHE GLN GLN THR SEQRES 15 A 593 TYR ARG LYS LYS TRP ARG PHE LEU THR SER ALA ASN ALA SEQRES 16 A 593 ASN VAL ILE LEU ALA GLU ALA ALA SER GLY GLU ARG PRO SEQRES 17 A 593 ALA ARG TRP ALA LEU THR THR GLY MET ALA SER ILE PRO SEQRES 18 A 593 TRP GLU TYR LEU PHE PHE TYR MET SER PRO ALA GLU TYR SEQRES 19 A 593 ASN ARG MET LYS ASN TYR PRO GLY THR PHE ALA LYS SER SEQRES 20 A 593 ALA SER VAL ARG ILE ARG THR TRP ASN THR ARG VAL ALA SEQRES 21 A 593 PHE GLN THR GLY ASP THR GLN THR ALA ASN ALA THR LEU SEQRES 22 A 593 ASN GLN ASN LYS PHE LEU GLN VAL ALA LYS GLY ILE ARG SEQRES 23 A 593 SER ILE PRO PHE ILE CYS SER THR ASN ARG LYS TYR THR SEQRES 24 A 593 TYR SER ASP THR GLU PRO MET GLN PRO THR GLY PHE ALA SEQRES 25 A 593 THR LEU THR SER TYR GLU TYR ARG ASP GLY LEU LYS ILE SEQRES 26 A 593 ALA MET TYR GLY TYR ASP ASN ASP SER PRO ASP PHE ALA SEQRES 27 A 593 LYS LYS PRO PRO ALA ASP ALA THR GLY ALA GLU ILE TYR SEQRES 28 A 593 LEU GLN ASP TYR LEU THR ILE TYR THR ASN ASP ALA ARG SEQRES 29 A 593 ALA THR THR GLY THR LYS ILE LEU ALA GLY PHE PRO PRO SEQRES 30 A 593 TYR LYS ASN PHE ILE GLU GLU PHE ASP ALA SER ALA CYS SEQRES 31 A 593 ILE ASN THR ASP VAL VAL ALA MET ASP TYR ASP PHE SER SEQRES 32 A 593 TYR ALA PRO LEU VAL PRO GLN PHE ALA PRO VAL PRO ASN SEQRES 33 A 593 ASN LEU ILE THR GLN ASN TYR ASN ALA SER TYR PRO ALA SEQRES 34 A 593 GLY THR LYS ASN GLU VAL THR ALA ALA LYS THR THR ASP SEQRES 35 A 593 SER SER GLN ALA THR PRO PRO THR GLN VAL ARG ASN ALA SEQRES 36 A 593 PRO ARG LYS TYR ILE GLN GLY PRO ASN ALA ASP THR THR SEQRES 37 A 593 PHE PHE ASP GLU GLU GLN ASN TYR LEU ARG VAL PRO ILE SEQRES 38 A 593 GLU GLN GLY GLY ILE PHE GLU GLU VAL ASN VAL GLU THR SEQRES 39 A 593 VAL HIS ASP THR GLN MET PRO SER ILE ASN VAL GLY ILE SEQRES 40 A 593 ARG ALA VAL PRO LYS LEU THR THR ILE ASP GLU THR THR SEQRES 41 A 593 GLN ALA ASN SER TRP LEU ASP ALA GLN GLY TYR PHE GLU SEQRES 42 A 593 VAL ASP CYS VAL LEU THR THR GLU SER VAL ASP PRO TYR SEQRES 43 A 593 THR TYR ILE LYS GLY GLY CYS TYR SER ALA ASN THR LYS SEQRES 44 A 593 SER GLN LEU GLN TYR PHE ALA ASN ASP GLY ARG PRO ILE SEQRES 45 A 593 ALA LYS VAL TYR ASP ASN PRO ASN VAL TYR GLY ARG MET SEQRES 46 A 593 GLN MET ILE LYS THR VAL LYS PRO SEQRES 1 B 2 DC DG SEQRES 1 C 8 DC DA DG DG DC DC DA DA SEQRES 1 D 3 DC DG DA HELIX 1 AA1 TYR A 224 TYR A 228 5 5 HELIX 2 AA2 SER A 230 LYS A 238 1 9 HELIX 3 AA3 ILE A 285 ILE A 288 5 4 HELIX 4 AA4 THR A 315 GLY A 329 1 15 HELIX 5 AA5 ASP A 336 LYS A 340 5 5 HELIX 6 AA6 PRO A 342 GLY A 347 1 6 HELIX 7 AA7 PRO A 377 ILE A 382 5 6 HELIX 8 AA8 PRO A 415 ILE A 419 5 5 HELIX 9 AA9 THR A 467 GLU A 472 1 6 HELIX 10 AB1 ALA A 556 LYS A 559 5 4 SHEET 1 AA1 4 ARG A 258 VAL A 259 0 SHEET 2 AA1 4 ALA A 528 TYR A 546 -1 O GLN A 529 N ARG A 258 SHEET 3 AA1 4 HIS A 175 SER A 192 -1 N TRP A 187 O VAL A 534 SHEET 4 AA1 4 GLU A 349 TYR A 351 1 O ILE A 350 N ARG A 188 SHEET 1 AA2 4 ARG A 258 VAL A 259 0 SHEET 2 AA2 4 ALA A 528 TYR A 546 -1 O GLN A 529 N ARG A 258 SHEET 3 AA2 4 PHE A 244 THR A 254 -1 N ARG A 253 O GLU A 533 SHEET 4 AA2 4 THR A 393 ASP A 401 -1 O VAL A 395 N ILE A 252 SHEET 1 AA3 4 ILE A 198 GLU A 201 0 SHEET 2 AA3 4 ARG A 210 SER A 219 -1 O ALA A 212 N LEU A 199 SHEET 3 AA3 4 TYR A 355 ASN A 361 -1 O ILE A 358 N LEU A 213 SHEET 4 AA3 4 SER A 293 ARG A 296 -1 N ARG A 296 O TYR A 355 SHEET 1 AA4 5 ILE A 198 GLU A 201 0 SHEET 2 AA4 5 ARG A 210 SER A 219 -1 O ALA A 212 N LEU A 199 SHEET 3 AA4 5 ILE A 503 ILE A 507 -1 O VAL A 505 N ALA A 218 SHEET 4 AA4 5 PHE A 278 LYS A 283 -1 N GLN A 280 O GLY A 506 SHEET 5 AA4 5 GLU A 383 ASP A 386 -1 O GLU A 383 N VAL A 281 SHEET 1 AA5 2 TYR A 298 TYR A 300 0 SHEET 2 AA5 2 PRO A 308 PHE A 311 -1 O THR A 309 N THR A 299 SHEET 1 AA6 2 ALA A 437 THR A 440 0 SHEET 2 AA6 2 THR A 450 ARG A 453 -1 O THR A 450 N THR A 440 SHEET 1 AA7 3 ARG A 457 TYR A 459 0 SHEET 2 AA7 3 GLN A 561 TYR A 564 -1 O GLN A 563 N LYS A 458 SHEET 3 AA7 3 PHE A 487 GLU A 489 -1 N GLU A 488 O LEU A 562 SHEET 1 AA8 2 VAL A 510 PRO A 511 0 SHEET 2 AA8 2 TRP A 525 LEU A 526 -1 O LEU A 526 N VAL A 510 SHEET 1 AA9 2 ILE A 572 LYS A 574 0 SHEET 2 AA9 2 MET A 587 LYS A 589 -1 O ILE A 588 N ALA A 573 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000