HEADER ISOMERASE 24-JUN-23 8T9O TITLE CRYSTAL STRUCTURE OF CF, A HETEROHEXAMER OF THE 4-OXALOCROTONATE TITLE 2 TAUTOMERASE (4-OT) FAMILY COMPND MOL_ID: 1; COMPND 2 MOLECULE: TAUTOMERASE BETA SUBUNIT; COMPND 3 CHAIN: A, E, F, G, H, L; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: TAUTOMERASE ALPHA SUBUNIT; COMPND 7 CHAIN: B, C, D, I, J, K; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HERBASPIRILLUM; SOURCE 3 ORGANISM_TAXID: 963; SOURCE 4 GENE: PMI16_01242; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: HERBASPIRILLUM; SOURCE 9 ORGANISM_TAXID: 963; SOURCE 10 GENE: PMI16_01243; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS 4-OT, HETEROHEXAMER, ASYMMETRIC, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR R.Y.MORENO,Y.J.ZHANG REVDAT 1 06-DEC-23 8T9O 0 JRNL AUTH K.ERWIN,R.Y.MORENO,B.J.BAAS,Y.J.ZHANG,C.P.WHITMAN JRNL TITL INTRODUCTION OF ASYMMETRY IN THE FUSED 4-OXALOCROTONATE JRNL TITL 2 TAUTOMERASES. JRNL REF BIOCHEMISTRY V. 62 2461 2023 JRNL REFN ISSN 0006-2960 JRNL PMID 37490761 JRNL DOI 10.1021/ACS.BIOCHEM.3C00180 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.74 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.2 REMARK 3 NUMBER OF REFLECTIONS : 18289 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.218 REMARK 3 R VALUE (WORKING SET) : 0.213 REMARK 3 FREE R VALUE : 0.269 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1829 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.7400 - 6.3600 0.97 1361 149 0.2029 0.2340 REMARK 3 2 6.3500 - 5.0500 0.99 1357 155 0.2033 0.2476 REMARK 3 3 5.0500 - 4.4100 0.98 1352 147 0.1656 0.2306 REMARK 3 4 4.4100 - 4.0100 0.97 1316 149 0.1658 0.2136 REMARK 3 5 4.0100 - 3.7200 0.99 1337 145 0.2157 0.2710 REMARK 3 6 3.7200 - 3.5000 0.99 1342 155 0.2178 0.2647 REMARK 3 7 3.5000 - 3.3200 0.99 1351 143 0.2237 0.2814 REMARK 3 8 3.3200 - 3.1800 0.99 1331 159 0.2529 0.3037 REMARK 3 9 3.1800 - 3.0600 0.97 1318 125 0.2562 0.3454 REMARK 3 10 3.0600 - 2.9500 0.90 1204 146 0.2565 0.3446 REMARK 3 11 2.9500 - 2.8600 0.88 1165 138 0.2637 0.3565 REMARK 3 12 2.8600 - 2.7800 0.82 1119 123 0.2608 0.3242 REMARK 3 13 2.7800 - 2.7000 0.66 907 95 0.2655 0.3433 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.310 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.850 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 5633 REMARK 3 ANGLE : 1.078 7597 REMARK 3 CHIRALITY : 0.058 924 REMARK 3 PLANARITY : 0.007 968 REMARK 3 DIHEDRAL : 15.485 774 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8T9O COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-JUL-23. REMARK 100 THE DEPOSITION ID IS D_1000273270. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-OCT-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 V723 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 V723 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18368 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06900 REMARK 200 FOR THE DATA SET : 5.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.75 REMARK 200 COMPLETENESS FOR SHELL (%) : 80.7 REMARK 200 DATA REDUNDANCY IN SHELL : 2.40 REMARK 200 R MERGE FOR SHELL (I) : 0.42600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX 1.18.2_3874 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: THE PROTEIN WAS CRYSTALLIZED IN 15-25% REMARK 280 PEG 3350, 0.1M HEPES BUFFER (PH 7.0-8.0) AND 0.2M MAGNESIUM REMARK 280 FORMATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 56.37550 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.74000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 56.37550 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 43.74000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13510 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -71.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14910 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -70.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: G, H, I, J, K, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 63 REMARK 465 THR A 64 REMARK 465 GLY A 65 REMARK 465 ARG A 66 REMARK 465 SER A 67 REMARK 465 PRO A 68 REMARK 465 ALA A 69 REMARK 465 GLY A 70 REMARK 465 SER A 71 REMARK 465 ILE B 60 REMARK 465 GLU B 61 REMARK 465 ALA B 62 REMARK 465 ALA B 63 REMARK 465 ARG B 64 REMARK 465 LYS B 65 REMARK 465 ASN B 66 REMARK 465 LYS B 67 REMARK 465 ILE C 60 REMARK 465 GLU C 61 REMARK 465 ALA C 62 REMARK 465 ALA C 63 REMARK 465 ARG C 64 REMARK 465 LYS C 65 REMARK 465 ASN C 66 REMARK 465 LYS C 67 REMARK 465 ILE D 60 REMARK 465 GLU D 61 REMARK 465 ALA D 62 REMARK 465 ALA D 63 REMARK 465 ARG D 64 REMARK 465 LYS D 65 REMARK 465 ASN D 66 REMARK 465 LYS D 67 REMARK 465 THR E 64 REMARK 465 GLY E 65 REMARK 465 ARG E 66 REMARK 465 SER E 67 REMARK 465 PRO E 68 REMARK 465 ALA E 69 REMARK 465 GLY E 70 REMARK 465 SER E 71 REMARK 465 ARG F 62 REMARK 465 GLY F 63 REMARK 465 THR F 64 REMARK 465 GLY F 65 REMARK 465 ARG F 66 REMARK 465 SER F 67 REMARK 465 PRO F 68 REMARK 465 ALA F 69 REMARK 465 GLY F 70 REMARK 465 SER F 71 REMARK 465 ARG G 66 REMARK 465 SER G 67 REMARK 465 PRO G 68 REMARK 465 ALA G 69 REMARK 465 GLY G 70 REMARK 465 SER G 71 REMARK 465 ARG H 66 REMARK 465 SER H 67 REMARK 465 PRO H 68 REMARK 465 ALA H 69 REMARK 465 GLY H 70 REMARK 465 SER H 71 REMARK 465 LYS I 65 REMARK 465 ASN I 66 REMARK 465 LYS I 67 REMARK 465 ARG J 64 REMARK 465 LYS J 65 REMARK 465 ASN J 66 REMARK 465 LYS J 67 REMARK 465 GLU K 61 REMARK 465 ALA K 62 REMARK 465 ALA K 63 REMARK 465 ARG K 64 REMARK 465 LYS K 65 REMARK 465 ASN K 66 REMARK 465 LYS K 67 REMARK 465 GLY L 65 REMARK 465 ARG L 66 REMARK 465 SER L 67 REMARK 465 PRO L 68 REMARK 465 ALA L 69 REMARK 465 GLY L 70 REMARK 465 SER L 71 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O VAL L 5 O HOH L 101 2.08 REMARK 500 O LYS L 43 O HOH L 101 2.17 REMARK 500 OD2 ASP L 37 O HOH L 102 2.18 REMARK 500 N GLY F 21 O HOH F 101 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NZ LYS F 29 OE2 GLU G 14 2556 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU C 29 CD GLU C 29 OE2 0.072 REMARK 500 GLU G 14 CD GLU G 14 OE2 -0.084 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU C 29 CA - CB - CG ANGL. DEV. = 20.1 DEGREES REMARK 500 ASP G 25 CB - CG - OD1 ANGL. DEV. = -8.8 DEGREES REMARK 500 ASP H 44 CB - CG - OD2 ANGL. DEV. = -7.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS F 29 -73.63 -52.95 REMARK 500 LEU F 60 -66.15 -93.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 GLU C 29 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 8T9O A 1 71 UNP J2M343 J2M343_9BURK 2 72 DBREF 8T9O B 1 67 UNP J3DHL6 J3DHL6_9BURK 2 68 DBREF 8T9O C 1 67 UNP J3DHL6 J3DHL6_9BURK 2 68 DBREF 8T9O D 1 67 UNP J3DHL6 J3DHL6_9BURK 2 68 DBREF 8T9O E 1 71 UNP J2M343 J2M343_9BURK 2 72 DBREF 8T9O F 1 71 UNP J2M343 J2M343_9BURK 2 72 DBREF 8T9O G 1 71 UNP J2M343 J2M343_9BURK 2 72 DBREF 8T9O H 1 71 UNP J2M343 J2M343_9BURK 2 72 DBREF 8T9O I 1 67 UNP J3DHL6 J3DHL6_9BURK 2 68 DBREF 8T9O J 1 67 UNP J3DHL6 J3DHL6_9BURK 2 68 DBREF 8T9O K 1 67 UNP J3DHL6 J3DHL6_9BURK 2 68 DBREF 8T9O L 1 71 UNP J2M343 J2M343_9BURK 2 72 SEQRES 1 A 71 SER ILE ILE GLN VAL PHE PHE ILE ALA GLY ARG THR ASP SEQRES 2 A 71 GLU GLN LYS GLU ARG LEU ILE GLY ALA LEU THR ASP ALA SEQRES 3 A 71 ALA VAL LYS THR ILE GLY ILE ASP ARG SER ASP VAL ARG SEQRES 4 A 71 VAL ILE LEU LYS ASP ILE PRO ASN THR GLU TYR GLY ILE SEQRES 5 A 71 ALA GLY LYS THR ALA LYS SER LEU GLY ARG GLY THR GLY SEQRES 6 A 71 ARG SER PRO ALA GLY SER SEQRES 1 B 67 PRO ASN ILE GLU MET PHE VAL VAL GLU GLY LEU SER ASP SEQRES 2 B 67 GLN GLN LYS GLU LYS LEU ILE ASP ALA LEU THR ALA ALA SEQRES 3 B 67 THR VAL GLU ALA ILE ASP ALA PRO ALA ASP SER ILE ARG SEQRES 4 B 67 VAL TRP LEU SER GLU ILE PRO ALA LYS GLN PHE GLY ILE SEQRES 5 B 67 ALA GLY LYS SER VAL ALA ALA ILE GLU ALA ALA ARG LYS SEQRES 6 B 67 ASN LYS SEQRES 1 C 67 PRO ASN ILE GLU MET PHE VAL VAL GLU GLY LEU SER ASP SEQRES 2 C 67 GLN GLN LYS GLU LYS LEU ILE ASP ALA LEU THR ALA ALA SEQRES 3 C 67 THR VAL GLU ALA ILE ASP ALA PRO ALA ASP SER ILE ARG SEQRES 4 C 67 VAL TRP LEU SER GLU ILE PRO ALA LYS GLN PHE GLY ILE SEQRES 5 C 67 ALA GLY LYS SER VAL ALA ALA ILE GLU ALA ALA ARG LYS SEQRES 6 C 67 ASN LYS SEQRES 1 D 67 PRO ASN ILE GLU MET PHE VAL VAL GLU GLY LEU SER ASP SEQRES 2 D 67 GLN GLN LYS GLU LYS LEU ILE ASP ALA LEU THR ALA ALA SEQRES 3 D 67 THR VAL GLU ALA ILE ASP ALA PRO ALA ASP SER ILE ARG SEQRES 4 D 67 VAL TRP LEU SER GLU ILE PRO ALA LYS GLN PHE GLY ILE SEQRES 5 D 67 ALA GLY LYS SER VAL ALA ALA ILE GLU ALA ALA ARG LYS SEQRES 6 D 67 ASN LYS SEQRES 1 E 71 SER ILE ILE GLN VAL PHE PHE ILE ALA GLY ARG THR ASP SEQRES 2 E 71 GLU GLN LYS GLU ARG LEU ILE GLY ALA LEU THR ASP ALA SEQRES 3 E 71 ALA VAL LYS THR ILE GLY ILE ASP ARG SER ASP VAL ARG SEQRES 4 E 71 VAL ILE LEU LYS ASP ILE PRO ASN THR GLU TYR GLY ILE SEQRES 5 E 71 ALA GLY LYS THR ALA LYS SER LEU GLY ARG GLY THR GLY SEQRES 6 E 71 ARG SER PRO ALA GLY SER SEQRES 1 F 71 SER ILE ILE GLN VAL PHE PHE ILE ALA GLY ARG THR ASP SEQRES 2 F 71 GLU GLN LYS GLU ARG LEU ILE GLY ALA LEU THR ASP ALA SEQRES 3 F 71 ALA VAL LYS THR ILE GLY ILE ASP ARG SER ASP VAL ARG SEQRES 4 F 71 VAL ILE LEU LYS ASP ILE PRO ASN THR GLU TYR GLY ILE SEQRES 5 F 71 ALA GLY LYS THR ALA LYS SER LEU GLY ARG GLY THR GLY SEQRES 6 F 71 ARG SER PRO ALA GLY SER SEQRES 1 G 71 SER ILE ILE GLN VAL PHE PHE ILE ALA GLY ARG THR ASP SEQRES 2 G 71 GLU GLN LYS GLU ARG LEU ILE GLY ALA LEU THR ASP ALA SEQRES 3 G 71 ALA VAL LYS THR ILE GLY ILE ASP ARG SER ASP VAL ARG SEQRES 4 G 71 VAL ILE LEU LYS ASP ILE PRO ASN THR GLU TYR GLY ILE SEQRES 5 G 71 ALA GLY LYS THR ALA LYS SER LEU GLY ARG GLY THR GLY SEQRES 6 G 71 ARG SER PRO ALA GLY SER SEQRES 1 H 71 SER ILE ILE GLN VAL PHE PHE ILE ALA GLY ARG THR ASP SEQRES 2 H 71 GLU GLN LYS GLU ARG LEU ILE GLY ALA LEU THR ASP ALA SEQRES 3 H 71 ALA VAL LYS THR ILE GLY ILE ASP ARG SER ASP VAL ARG SEQRES 4 H 71 VAL ILE LEU LYS ASP ILE PRO ASN THR GLU TYR GLY ILE SEQRES 5 H 71 ALA GLY LYS THR ALA LYS SER LEU GLY ARG GLY THR GLY SEQRES 6 H 71 ARG SER PRO ALA GLY SER SEQRES 1 I 67 PRO ASN ILE GLU MET PHE VAL VAL GLU GLY LEU SER ASP SEQRES 2 I 67 GLN GLN LYS GLU LYS LEU ILE ASP ALA LEU THR ALA ALA SEQRES 3 I 67 THR VAL GLU ALA ILE ASP ALA PRO ALA ASP SER ILE ARG SEQRES 4 I 67 VAL TRP LEU SER GLU ILE PRO ALA LYS GLN PHE GLY ILE SEQRES 5 I 67 ALA GLY LYS SER VAL ALA ALA ILE GLU ALA ALA ARG LYS SEQRES 6 I 67 ASN LYS SEQRES 1 J 67 PRO ASN ILE GLU MET PHE VAL VAL GLU GLY LEU SER ASP SEQRES 2 J 67 GLN GLN LYS GLU LYS LEU ILE ASP ALA LEU THR ALA ALA SEQRES 3 J 67 THR VAL GLU ALA ILE ASP ALA PRO ALA ASP SER ILE ARG SEQRES 4 J 67 VAL TRP LEU SER GLU ILE PRO ALA LYS GLN PHE GLY ILE SEQRES 5 J 67 ALA GLY LYS SER VAL ALA ALA ILE GLU ALA ALA ARG LYS SEQRES 6 J 67 ASN LYS SEQRES 1 K 67 PRO ASN ILE GLU MET PHE VAL VAL GLU GLY LEU SER ASP SEQRES 2 K 67 GLN GLN LYS GLU LYS LEU ILE ASP ALA LEU THR ALA ALA SEQRES 3 K 67 THR VAL GLU ALA ILE ASP ALA PRO ALA ASP SER ILE ARG SEQRES 4 K 67 VAL TRP LEU SER GLU ILE PRO ALA LYS GLN PHE GLY ILE SEQRES 5 K 67 ALA GLY LYS SER VAL ALA ALA ILE GLU ALA ALA ARG LYS SEQRES 6 K 67 ASN LYS SEQRES 1 L 71 SER ILE ILE GLN VAL PHE PHE ILE ALA GLY ARG THR ASP SEQRES 2 L 71 GLU GLN LYS GLU ARG LEU ILE GLY ALA LEU THR ASP ALA SEQRES 3 L 71 ALA VAL LYS THR ILE GLY ILE ASP ARG SER ASP VAL ARG SEQRES 4 L 71 VAL ILE LEU LYS ASP ILE PRO ASN THR GLU TYR GLY ILE SEQRES 5 L 71 ALA GLY LYS THR ALA LYS SER LEU GLY ARG GLY THR GLY SEQRES 6 L 71 ARG SER PRO ALA GLY SER FORMUL 13 HOH *64(H2 O) HELIX 1 AA1 THR A 12 ILE A 31 1 20 HELIX 2 AA2 ASP A 34 ASP A 37 5 4 HELIX 3 AA3 LYS A 58 GLY A 61 5 4 HELIX 4 AA4 SER B 12 ASP B 32 1 21 HELIX 5 AA5 PRO B 34 SER B 37 5 4 HELIX 6 AA6 SER C 12 ILE C 31 1 20 HELIX 7 AA7 PRO C 34 SER C 37 5 4 HELIX 8 AA8 SER D 12 ASP D 32 1 21 HELIX 9 AA9 PRO D 34 SER D 37 5 4 HELIX 10 AB1 THR E 12 GLY E 32 1 21 HELIX 11 AB2 ASP E 34 ASP E 37 5 4 HELIX 12 AB3 ALA E 57 GLY E 61 1 5 HELIX 13 AB4 THR F 12 GLY F 32 1 21 HELIX 14 AB5 ASP F 34 ASP F 37 5 4 HELIX 15 AB6 ALA F 57 GLY F 61 1 5 HELIX 16 AB7 THR G 12 GLY G 32 1 21 HELIX 17 AB8 ASP G 34 ASP G 37 5 4 HELIX 18 AB9 THR H 12 GLY H 32 1 21 HELIX 19 AC1 ASP H 34 ASP H 37 5 4 HELIX 20 AC2 PRO H 46 THR H 48 5 3 HELIX 21 AC3 SER I 12 ASP I 32 1 21 HELIX 22 AC4 PRO I 34 SER I 37 5 4 HELIX 23 AC5 VAL I 57 ALA I 63 1 7 HELIX 24 AC6 SER J 12 ASP J 32 1 21 HELIX 25 AC7 PRO J 34 SER J 37 5 4 HELIX 26 AC8 VAL J 57 ALA J 62 1 6 HELIX 27 AC9 SER K 12 ASP K 32 1 21 HELIX 28 AD1 PRO K 34 SER K 37 5 4 HELIX 29 AD2 THR L 12 GLY L 32 1 21 HELIX 30 AD3 ASP L 34 ASP L 37 5 4 HELIX 31 AD4 ALA L 57 GLY L 61 1 5 SHEET 1 AA1 8 LYS D 55 SER D 56 0 SHEET 2 AA1 8 PHE D 50 ILE D 52 -1 N ILE D 52 O LYS D 55 SHEET 3 AA1 8 ARG A 39 ILE A 45 -1 N VAL A 40 O GLY D 51 SHEET 4 AA1 8 ILE A 2 ILE A 8 1 N ILE A 3 O ARG A 39 SHEET 5 AA1 8 ASN C 2 VAL C 8 -1 O PHE C 6 N ILE A 2 SHEET 6 AA1 8 ARG C 39 ILE C 45 1 O ILE C 45 N VAL C 7 SHEET 7 AA1 8 TYR E 50 ILE E 52 -1 O GLY E 51 N VAL C 40 SHEET 8 AA1 8 LYS E 55 THR E 56 -1 O LYS E 55 N ILE E 52 SHEET 1 AA2 8 LYS A 55 THR A 56 0 SHEET 2 AA2 8 TYR A 50 ILE A 52 -1 N ILE A 52 O LYS A 55 SHEET 3 AA2 8 ARG B 39 ILE B 45 -1 O VAL B 40 N GLY A 51 SHEET 4 AA2 8 ASN B 2 VAL B 8 1 N VAL B 7 O ILE B 45 SHEET 5 AA2 8 ILE E 2 ILE E 8 -1 O GLN E 4 N GLU B 4 SHEET 6 AA2 8 ARG E 39 ILE E 45 1 O ILE E 41 N ILE E 3 SHEET 7 AA2 8 TYR F 50 ILE F 52 -1 O GLY F 51 N VAL E 40 SHEET 8 AA2 8 LYS F 55 THR F 56 -1 O LYS F 55 N ILE F 52 SHEET 1 AA3 8 LYS B 55 SER B 56 0 SHEET 2 AA3 8 PHE B 50 ILE B 52 -1 N ILE B 52 O LYS B 55 SHEET 3 AA3 8 ARG D 39 ILE D 45 -1 O VAL D 40 N GLY B 51 SHEET 4 AA3 8 ASN D 2 VAL D 8 1 N MET D 5 O SER D 43 SHEET 5 AA3 8 ILE F 2 ILE F 8 -1 O PHE F 6 N ASN D 2 SHEET 6 AA3 8 ARG F 39 ILE F 45 1 O ILE F 41 N ILE F 3 SHEET 7 AA3 8 PHE C 50 ILE C 52 -1 N GLY C 51 O VAL F 40 SHEET 8 AA3 8 LYS C 55 SER C 56 -1 O LYS C 55 N ILE C 52 SHEET 1 AA4 8 LYS J 55 SER J 56 0 SHEET 2 AA4 8 PHE J 50 ILE J 52 -1 N ILE J 52 O LYS J 55 SHEET 3 AA4 8 ARG G 39 ILE G 45 -1 N VAL G 40 O GLY J 51 SHEET 4 AA4 8 ILE G 2 ILE G 8 1 N ILE G 3 O ILE G 41 SHEET 5 AA4 8 ASN I 2 VAL I 8 -1 O ASN I 2 N PHE G 6 SHEET 6 AA4 8 ARG I 39 ILE I 45 1 O SER I 43 N MET I 5 SHEET 7 AA4 8 PHE K 50 ILE K 52 -1 O GLY K 51 N VAL I 40 SHEET 8 AA4 8 LYS K 55 SER K 56 -1 O LYS K 55 N ILE K 52 SHEET 1 AA5 8 LYS G 55 THR G 56 0 SHEET 2 AA5 8 TYR G 50 ILE G 52 -1 N ILE G 52 O LYS G 55 SHEET 3 AA5 8 ARG H 39 ILE H 45 -1 O VAL H 40 N GLY G 51 SHEET 4 AA5 8 ILE H 2 ILE H 8 1 N ILE H 3 O ARG H 39 SHEET 5 AA5 8 ASN K 2 VAL K 8 -1 O GLU K 4 N GLN H 4 SHEET 6 AA5 8 ARG K 39 ILE K 45 1 O ILE K 45 N VAL K 7 SHEET 7 AA5 8 TYR L 50 ILE L 52 -1 O GLY L 51 N VAL K 40 SHEET 8 AA5 8 LYS L 55 THR L 56 -1 O LYS L 55 N ILE L 52 SHEET 1 AA6 8 LYS H 55 THR H 56 0 SHEET 2 AA6 8 TYR H 50 ILE H 52 -1 N ILE H 52 O LYS H 55 SHEET 3 AA6 8 ARG J 39 ILE J 45 -1 O VAL J 40 N GLY H 51 SHEET 4 AA6 8 ASN J 2 VAL J 8 1 N VAL J 7 O ILE J 45 SHEET 5 AA6 8 ILE L 2 ILE L 8 -1 O GLN L 4 N GLU J 4 SHEET 6 AA6 8 ARG L 39 ILE L 45 1 O ARG L 39 N ILE L 3 SHEET 7 AA6 8 PHE I 50 ILE I 52 -1 N GLY I 51 O VAL L 40 SHEET 8 AA6 8 LYS I 55 SER I 56 -1 O LYS I 55 N ILE I 52 CRYST1 112.751 87.480 89.698 90.00 125.12 90.00 C 1 2 1 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008869 0.000000 0.006237 0.00000 SCALE2 0.000000 0.011431 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013629 0.00000