HEADER VIRUS/DNA 26-JUN-23 8T9X TITLE ZOPHOBAS MORIO BLACK WASTING VIRUS STRAIN NJ2-MOLITOR VIRION STRUCTURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: MAJOR CAPSID PROTEIN; COMPND 3 CHAIN: A; COMPND 4 MOL_ID: 2; COMPND 5 MOLECULE: DNA (5'-D(P*CP*GP*A)-3'); COMPND 6 CHAIN: B; COMPND 7 MOL_ID: 3; COMPND 8 MOLECULE: DNA (5'-D(P*CP*AP*GP*GP*CP*CP*AP*AP*A)-3'); COMPND 9 CHAIN: C; COMPND 10 MOL_ID: 4; COMPND 11 MOLECULE: DNA (5'-D(P*TP*CP*GP*AP*A)-3'); COMPND 12 CHAIN: D SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ZOPHOBAS MORIO BLACK WASTING VIRUS; SOURCE 3 ORGANISM_TAXID: 3067671; SOURCE 4 MOL_ID: 2; SOURCE 5 ORGANISM_SCIENTIFIC: ZOPHOBAS MORIO BLACK WASTING VIRUS; SOURCE 6 ORGANISM_TAXID: 3067671; SOURCE 7 MOL_ID: 3; SOURCE 8 ORGANISM_SCIENTIFIC: ZOPHOBAS MORIO BLACK WASTING VIRUS; SOURCE 9 ORGANISM_TAXID: 3067671; SOURCE 10 MOL_ID: 4; SOURCE 11 ORGANISM_SCIENTIFIC: ZOPHOBAS MORIO BLACK WASTING VIRUS; SOURCE 12 ORGANISM_TAXID: 3067671 KEYWDS CAPSID, VIRION, PARVOVIRUS, DENSOVIRUS, INVERTEBRATE, INSECT, KEYWDS 2 PATHOGEN, SSDNA, VIRUS, VIRUS-DNA COMPLEX EXPDTA ELECTRON MICROSCOPY AUTHOR J.J.PENZES,J.T.KAELBER REVDAT 2 08-MAY-24 8T9X 1 SOURCE REVDAT 1 21-FEB-24 8T9X 0 JRNL AUTH J.J.PENZES,M.HOLM,E.FIRLAR,J.T.KAELBER JRNL TITL SEQUENCING-FREE DISCOVERY BY CRYO-EM OF A PATHOGENIC JRNL TITL 2 PARVOVIRUS CAUSING MASS MORTALITY OF FARMED BEETLES JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : CRYOSPARC, SERIALEM, CRYOSPARC, REMARK 3 CRYOSPARC, CRYOSPARC, CRYOSPARC REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : AB INITIO MODEL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 2.000 REMARK 3 NUMBER OF PARTICLES : 15964 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 8T9X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-JUN-23. REMARK 100 THE DEPOSITION ID IS D_1000275531. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : ZOPHOBAS MORIO DENSOVIRUS REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 2.00 REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.40 REMARK 245 SAMPLE DETAILS : PURIFIED FROM T. MOLITOR REMARK 245 LARVAE, WHICH WERE ASYMPTOMATIC REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TALOS ARCTICA REMARK 245 DETECTOR TYPE : GATAN K2 SUMMIT (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 500.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 1200.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.70 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 3200.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 200 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 THE ASSEMBLY REPRESENTED IN THIS ENTRY HAS REGULAR REMARK 300 ICOSAHEDRAL POINT SYMMETRY (SCHOENFLIES SYMBOL = I). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: 240-MERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: 240-MERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.309017 -0.809017 0.500000 283.50000 REMARK 350 BIOMT2 2 0.809017 0.500000 0.309017 -175.21264 REMARK 350 BIOMT3 2 -0.500000 0.309017 0.809017 108.28736 REMARK 350 BIOMT1 3 -0.809017 -0.500000 0.309017 567.00000 REMARK 350 BIOMT2 3 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT3 3 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT1 4 -0.809017 0.500000 -0.309017 458.71264 REMARK 350 BIOMT2 4 -0.500000 -0.309017 0.809017 283.50000 REMARK 350 BIOMT3 4 0.309017 0.809017 0.500000 -175.21264 REMARK 350 BIOMT1 5 0.309017 0.809017 -0.500000 108.28736 REMARK 350 BIOMT2 5 -0.809017 0.500000 0.309017 283.50000 REMARK 350 BIOMT3 5 0.500000 0.309017 0.809017 -175.21264 REMARK 350 BIOMT1 6 -1.000000 0.000000 0.000000 567.00000 REMARK 350 BIOMT2 6 0.000000 -1.000000 0.000000 567.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 7 -0.309017 0.809017 -0.500000 283.50000 REMARK 350 BIOMT2 7 -0.809017 -0.500000 -0.309017 742.21264 REMARK 350 BIOMT3 7 -0.500000 0.309017 0.809017 108.28736 REMARK 350 BIOMT1 8 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 8 -0.500000 0.309017 -0.809017 567.00000 REMARK 350 BIOMT3 8 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT1 9 0.809017 -0.500000 0.309017 108.28736 REMARK 350 BIOMT2 9 0.500000 0.309017 -0.809017 283.50000 REMARK 350 BIOMT3 9 0.309017 0.809017 0.500000 -175.21264 REMARK 350 BIOMT1 10 -0.309017 -0.809017 0.500000 458.71264 REMARK 350 BIOMT2 10 0.809017 -0.500000 -0.309017 283.50000 REMARK 350 BIOMT3 10 0.500000 0.309017 0.809017 -175.21264 REMARK 350 BIOMT1 11 -1.000000 0.000000 0.000000 567.00000 REMARK 350 BIOMT2 11 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 11 0.000000 0.000000 -1.000000 567.00000 REMARK 350 BIOMT1 12 -0.309017 0.809017 -0.500000 283.50000 REMARK 350 BIOMT2 12 0.809017 0.500000 0.309017 -175.21264 REMARK 350 BIOMT3 12 0.500000 -0.309017 -0.809017 458.71264 REMARK 350 BIOMT1 13 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 13 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT3 13 0.309017 -0.809017 -0.500000 567.00000 REMARK 350 BIOMT1 14 0.809017 -0.500000 0.309017 108.28736 REMARK 350 BIOMT2 14 -0.500000 -0.309017 0.809017 283.50000 REMARK 350 BIOMT3 14 -0.309017 -0.809017 -0.500000 742.21264 REMARK 350 BIOMT1 15 -0.309017 -0.809017 0.500000 458.71264 REMARK 350 BIOMT2 15 -0.809017 0.500000 0.309017 283.50000 REMARK 350 BIOMT3 15 -0.500000 -0.309017 -0.809017 742.21264 REMARK 350 BIOMT1 16 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 16 0.000000 -1.000000 0.000000 567.00000 REMARK 350 BIOMT3 16 0.000000 0.000000 -1.000000 567.00000 REMARK 350 BIOMT1 17 0.309017 -0.809017 0.500000 283.50000 REMARK 350 BIOMT2 17 -0.809017 -0.500000 -0.309017 742.21264 REMARK 350 BIOMT3 17 0.500000 -0.309017 -0.809017 458.71264 REMARK 350 BIOMT1 18 -0.809017 -0.500000 0.309017 567.00000 REMARK 350 BIOMT2 18 -0.500000 0.309017 -0.809017 567.00000 REMARK 350 BIOMT3 18 0.309017 -0.809017 -0.500000 567.00000 REMARK 350 BIOMT1 19 -0.809017 0.500000 -0.309017 458.71264 REMARK 350 BIOMT2 19 0.500000 0.309017 -0.809017 283.50000 REMARK 350 BIOMT3 19 -0.309017 -0.809017 -0.500000 742.21264 REMARK 350 BIOMT1 20 0.309017 0.809017 -0.500000 108.28736 REMARK 350 BIOMT2 20 0.809017 -0.500000 -0.309017 283.50000 REMARK 350 BIOMT3 20 -0.500000 -0.309017 -0.809017 742.21264 REMARK 350 BIOMT1 21 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 21 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 21 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 22 -0.500000 0.309017 0.809017 108.28736 REMARK 350 BIOMT2 22 0.309017 -0.809017 0.500000 283.50000 REMARK 350 BIOMT3 22 0.809017 0.500000 0.309017 -175.21264 REMARK 350 BIOMT1 23 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT2 23 -0.809017 -0.500000 0.309017 567.00000 REMARK 350 BIOMT3 23 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT1 24 0.309017 0.809017 0.500000 -175.21264 REMARK 350 BIOMT2 24 -0.809017 0.500000 -0.309017 458.71264 REMARK 350 BIOMT3 24 -0.500000 -0.309017 0.809017 283.50000 REMARK 350 BIOMT1 25 0.500000 0.309017 0.809017 -175.21264 REMARK 350 BIOMT2 25 0.309017 0.809017 -0.500000 108.28736 REMARK 350 BIOMT3 25 -0.809017 0.500000 0.309017 283.50000 REMARK 350 BIOMT1 26 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 26 -1.000000 0.000000 0.000000 567.00000 REMARK 350 BIOMT3 26 0.000000 -1.000000 0.000000 567.00000 REMARK 350 BIOMT1 27 -0.500000 0.309017 0.809017 108.28736 REMARK 350 BIOMT2 27 -0.309017 0.809017 -0.500000 283.50000 REMARK 350 BIOMT3 27 -0.809017 -0.500000 -0.309017 742.21264 REMARK 350 BIOMT1 28 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT2 28 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 28 -0.500000 0.309017 -0.809017 567.00000 REMARK 350 BIOMT1 29 0.309017 0.809017 0.500000 -175.21264 REMARK 350 BIOMT2 29 0.809017 -0.500000 0.309017 108.28736 REMARK 350 BIOMT3 29 0.500000 0.309017 -0.809017 283.50000 REMARK 350 BIOMT1 30 0.500000 0.309017 0.809017 -175.21264 REMARK 350 BIOMT2 30 -0.309017 -0.809017 0.500000 458.71264 REMARK 350 BIOMT3 30 0.809017 -0.500000 -0.309017 283.50000 REMARK 350 BIOMT1 31 0.000000 0.000000 -1.000000 567.00000 REMARK 350 BIOMT2 31 -1.000000 0.000000 0.000000 567.00000 REMARK 350 BIOMT3 31 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 32 0.500000 -0.309017 -0.809017 458.71264 REMARK 350 BIOMT2 32 -0.309017 0.809017 -0.500000 283.50000 REMARK 350 BIOMT3 32 0.809017 0.500000 0.309017 -175.21264 REMARK 350 BIOMT1 33 0.309017 -0.809017 -0.500000 567.00000 REMARK 350 BIOMT2 33 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 33 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT1 34 -0.309017 -0.809017 -0.500000 742.21264 REMARK 350 BIOMT2 34 0.809017 -0.500000 0.309017 108.28736 REMARK 350 BIOMT3 34 -0.500000 -0.309017 0.809017 283.50000 REMARK 350 BIOMT1 35 -0.500000 -0.309017 -0.809017 742.21264 REMARK 350 BIOMT2 35 -0.309017 -0.809017 0.500000 458.71264 REMARK 350 BIOMT3 35 -0.809017 0.500000 0.309017 283.50000 REMARK 350 BIOMT1 36 0.000000 0.000000 -1.000000 567.00000 REMARK 350 BIOMT2 36 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 36 0.000000 -1.000000 0.000000 567.00000 REMARK 350 BIOMT1 37 0.500000 -0.309017 -0.809017 458.71264 REMARK 350 BIOMT2 37 0.309017 -0.809017 0.500000 283.50000 REMARK 350 BIOMT3 37 -0.809017 -0.500000 -0.309017 742.21264 REMARK 350 BIOMT1 38 0.309017 -0.809017 -0.500000 567.00000 REMARK 350 BIOMT2 38 -0.809017 -0.500000 0.309017 567.00000 REMARK 350 BIOMT3 38 -0.500000 0.309017 -0.809017 567.00000 REMARK 350 BIOMT1 39 -0.309017 -0.809017 -0.500000 742.21264 REMARK 350 BIOMT2 39 -0.809017 0.500000 -0.309017 458.71264 REMARK 350 BIOMT3 39 0.500000 0.309017 -0.809017 283.50000 REMARK 350 BIOMT1 40 -0.500000 -0.309017 -0.809017 742.21264 REMARK 350 BIOMT2 40 0.309017 0.809017 -0.500000 108.28736 REMARK 350 BIOMT3 40 0.809017 -0.500000 -0.309017 283.50000 REMARK 350 BIOMT1 41 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 41 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 41 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 42 0.809017 0.500000 0.309017 -175.21264 REMARK 350 BIOMT2 42 -0.500000 0.309017 0.809017 108.28736 REMARK 350 BIOMT3 42 0.309017 -0.809017 0.500000 283.50000 REMARK 350 BIOMT1 43 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT2 43 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT3 43 -0.809017 -0.500000 0.309017 567.00000 REMARK 350 BIOMT1 44 -0.500000 -0.309017 0.809017 283.50000 REMARK 350 BIOMT2 44 0.309017 0.809017 0.500000 -175.21264 REMARK 350 BIOMT3 44 -0.809017 0.500000 -0.309017 458.71264 REMARK 350 BIOMT1 45 -0.809017 0.500000 0.309017 283.50000 REMARK 350 BIOMT2 45 0.500000 0.309017 0.809017 -175.21264 REMARK 350 BIOMT3 45 0.309017 0.809017 -0.500000 108.28736 REMARK 350 BIOMT1 46 0.000000 -1.000000 0.000000 567.00000 REMARK 350 BIOMT2 46 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 46 -1.000000 0.000000 0.000000 567.00000 REMARK 350 BIOMT1 47 -0.809017 -0.500000 -0.309017 742.21264 REMARK 350 BIOMT2 47 -0.500000 0.309017 0.809017 108.28736 REMARK 350 BIOMT3 47 -0.309017 0.809017 -0.500000 283.50000 REMARK 350 BIOMT1 48 -0.500000 0.309017 -0.809017 567.00000 REMARK 350 BIOMT2 48 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT3 48 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 49 0.500000 0.309017 -0.809017 283.50000 REMARK 350 BIOMT2 49 0.309017 0.809017 0.500000 -175.21264 REMARK 350 BIOMT3 49 0.809017 -0.500000 0.309017 108.28736 REMARK 350 BIOMT1 50 0.809017 -0.500000 -0.309017 283.50000 REMARK 350 BIOMT2 50 0.500000 0.309017 0.809017 -175.21264 REMARK 350 BIOMT3 50 -0.309017 -0.809017 0.500000 458.71264 REMARK 350 BIOMT1 51 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 51 0.000000 0.000000 -1.000000 567.00000 REMARK 350 BIOMT3 51 -1.000000 0.000000 0.000000 567.00000 REMARK 350 BIOMT1 52 0.809017 0.500000 0.309017 -175.21264 REMARK 350 BIOMT2 52 0.500000 -0.309017 -0.809017 458.71264 REMARK 350 BIOMT3 52 -0.309017 0.809017 -0.500000 283.50000 REMARK 350 BIOMT1 53 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT2 53 0.309017 -0.809017 -0.500000 567.00000 REMARK 350 BIOMT3 53 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 54 -0.500000 -0.309017 0.809017 283.50000 REMARK 350 BIOMT2 54 -0.309017 -0.809017 -0.500000 742.21264 REMARK 350 BIOMT3 54 0.809017 -0.500000 0.309017 108.28736 REMARK 350 BIOMT1 55 -0.809017 0.500000 0.309017 283.50000 REMARK 350 BIOMT2 55 -0.500000 -0.309017 -0.809017 742.21264 REMARK 350 BIOMT3 55 -0.309017 -0.809017 0.500000 458.71264 REMARK 350 BIOMT1 56 0.000000 -1.000000 0.000000 567.00000 REMARK 350 BIOMT2 56 0.000000 0.000000 -1.000000 567.00000 REMARK 350 BIOMT3 56 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 57 -0.809017 -0.500000 -0.309017 742.21264 REMARK 350 BIOMT2 57 0.500000 -0.309017 -0.809017 458.71264 REMARK 350 BIOMT3 57 0.309017 -0.809017 0.500000 283.50000 REMARK 350 BIOMT1 58 -0.500000 0.309017 -0.809017 567.00000 REMARK 350 BIOMT2 58 0.309017 -0.809017 -0.500000 567.00000 REMARK 350 BIOMT3 58 -0.809017 -0.500000 0.309017 567.00000 REMARK 350 BIOMT1 59 0.500000 0.309017 -0.809017 283.50000 REMARK 350 BIOMT2 59 -0.309017 -0.809017 -0.500000 742.21264 REMARK 350 BIOMT3 59 -0.809017 0.500000 -0.309017 458.71264 REMARK 350 BIOMT1 60 0.809017 -0.500000 -0.309017 283.50000 REMARK 350 BIOMT2 60 -0.500000 -0.309017 -0.809017 742.21264 REMARK 350 BIOMT3 60 0.309017 0.809017 -0.500000 108.28736 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG1 THR A 366 H1 HOH A 659 1.13 REMARK 500 HG SER A 230 H1 HOH A 650 1.19 REMARK 500 HD21 ASN A 578 OE1 GLN A 586 1.34 REMARK 500 HZ1 LYS A 238 OE2 GLU A 473 1.36 REMARK 500 HG1 THR A 436 OE2 GLU A 488 1.43 REMARK 500 HH TYR A 404 OE2 GLU A 489 1.46 REMARK 500 OD1 ASP A 354 H1 HOH A 601 1.51 REMARK 500 O ASP A 362 H1 HOH A 602 1.51 REMARK 500 O ARG A 253 H GLU A 533 1.55 REMARK 500 OE2 GLU A 233 H2 HOH A 603 1.55 REMARK 500 OE2 GLU A 349 HH TYR A 531 1.58 REMARK 500 OG1 THR A 540 H2 HOH A 606 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PRO A 448 CG PRO A 448 CD -0.471 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 448 CA - N - CD ANGL. DEV. = -14.5 DEGREES REMARK 500 PRO A 448 CA - CB - CG ANGL. DEV. = -17.6 DEGREES REMARK 500 PRO A 448 N - CD - CG ANGL. DEV. = -22.8 DEGREES REMARK 500 DC B 1 O4' - C1' - N1 ANGL. DEV. = 3.4 DEGREES REMARK 500 DG B 2 O4' - C1' - N9 ANGL. DEV. = 3.3 DEGREES REMARK 500 DA B 3 O4' - C1' - N9 ANGL. DEV. = 4.8 DEGREES REMARK 500 DA B 3 C4 - C5 - C6 ANGL. DEV. = -3.1 DEGREES REMARK 500 DA B 3 C5 - C6 - N1 ANGL. DEV. = 3.9 DEGREES REMARK 500 DA B 3 N1 - C6 - N6 ANGL. DEV. = -6.4 DEGREES REMARK 500 DC C 1 N3 - C2 - O2 ANGL. DEV. = -5.1 DEGREES REMARK 500 DA C 2 O4' - C1' - N9 ANGL. DEV. = 3.0 DEGREES REMARK 500 DA C 2 C4 - C5 - C6 ANGL. DEV. = -3.2 DEGREES REMARK 500 DA C 2 C5 - C6 - N1 ANGL. DEV. = 3.8 DEGREES REMARK 500 DA C 2 N1 - C6 - N6 ANGL. DEV. = -5.5 DEGREES REMARK 500 DA C 2 C3' - O3' - P ANGL. DEV. = 8.5 DEGREES REMARK 500 DC C 5 O4' - C1' - N1 ANGL. DEV. = 2.5 DEGREES REMARK 500 DC C 6 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DC C 6 N3 - C2 - O2 ANGL. DEV. = -4.5 DEGREES REMARK 500 DA C 7 C3' - C2' - C1' ANGL. DEV. = -5.2 DEGREES REMARK 500 DA C 7 O4' - C1' - N9 ANGL. DEV. = 11.2 DEGREES REMARK 500 DA C 7 C5 - C6 - N1 ANGL. DEV. = 4.0 DEGREES REMARK 500 DA C 8 O4' - C1' - N9 ANGL. DEV. = 6.2 DEGREES REMARK 500 DA C 8 C5 - C6 - N1 ANGL. DEV. = 4.0 DEGREES REMARK 500 DA C 8 N1 - C6 - N6 ANGL. DEV. = -5.7 DEGREES REMARK 500 DA C 9 O4' - C1' - N9 ANGL. DEV. = 5.5 DEGREES REMARK 500 DA C 9 C5 - C6 - N1 ANGL. DEV. = 3.9 DEGREES REMARK 500 DA C 9 N1 - C6 - N6 ANGL. DEV. = -5.9 DEGREES REMARK 500 DT D 1 C6 - C5 - C7 ANGL. DEV. = -3.6 DEGREES REMARK 500 DC D 2 O4' - C1' - N1 ANGL. DEV. = 9.4 DEGREES REMARK 500 DC D 2 N1 - C2 - O2 ANGL. DEV. = 4.9 DEGREES REMARK 500 DC D 2 N3 - C2 - O2 ANGL. DEV. = -6.2 DEGREES REMARK 500 DA D 4 O4' - C1' - N9 ANGL. DEV. = 3.8 DEGREES REMARK 500 DA D 4 C5 - C6 - N1 ANGL. DEV. = 3.7 DEGREES REMARK 500 DA D 4 N1 - C6 - N6 ANGL. DEV. = -5.3 DEGREES REMARK 500 DA D 5 O4' - C1' - N9 ANGL. DEV. = 2.1 DEGREES REMARK 500 DA D 5 C5 - C6 - N1 ANGL. DEV. = 3.4 DEGREES REMARK 500 DA D 5 N1 - C6 - N6 ANGL. DEV. = -5.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 255 -169.16 -103.68 REMARK 500 ASN A 464 33.10 -98.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 DA B 3 0.12 SIDE CHAIN REMARK 500 DG C 4 0.08 SIDE CHAIN REMARK 500 DA C 7 0.12 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-41125 RELATED DB: EMDB REMARK 900 ZOPHOBAS MORIO BLACK WASTING VIRUS STRAIN NJ2-MOLITOR VIRION REMARK 900 STRUCTURE DBREF 8T9X A 165 593 PDB 8T9X 8T9X 165 593 DBREF 8T9X B 1 3 PDB 8T9X 8T9X 1 3 DBREF 8T9X C 1 9 PDB 8T9X 8T9X 1 9 DBREF 8T9X D 1 5 PDB 8T9X 8T9X 1 5 SEQRES 1 A 429 ALA THR ALA ILE LEU ARG PRO ILE GLY LEU HIS VAL GLU SEQRES 2 A 429 LYS PHE GLN GLN THR TYR ARG LYS LYS TRP ARG PHE LEU SEQRES 3 A 429 THR SER ALA ASN ALA ASN VAL ILE LEU ALA GLU ALA ALA SEQRES 4 A 429 SER GLY GLU ARG PRO ALA ARG TRP ALA LEU THR THR GLY SEQRES 5 A 429 MET ALA SER ILE PRO TRP GLU TYR LEU PHE PHE TYR MET SEQRES 6 A 429 SER PRO ALA GLU TYR ASN ARG MET LYS ASN TYR PRO GLY SEQRES 7 A 429 THR PHE ALA LYS SER ALA SER VAL ARG ILE ARG THR TRP SEQRES 8 A 429 ASN THR ARG VAL ALA PHE GLN THR GLY ASP THR GLN THR SEQRES 9 A 429 ALA ASN ALA THR LEU ASN GLN ASN LYS PHE LEU GLN VAL SEQRES 10 A 429 ALA LYS GLY ILE ARG SER ILE PRO PHE ILE CYS SER THR SEQRES 11 A 429 ASN ARG LYS TYR THR TYR SER ASP THR GLU PRO MET GLN SEQRES 12 A 429 PRO THR GLY PHE ALA THR LEU THR SER TYR GLU TYR ARG SEQRES 13 A 429 ASP GLY LEU LYS ILE ALA MET TYR GLY TYR ASP ASN ASP SEQRES 14 A 429 SER ALA ASP PHE ALA LYS LYS PRO PRO ALA ASP ALA THR SEQRES 15 A 429 GLY ALA GLU ILE TYR LEU GLN ASP TYR LEU THR ILE TYR SEQRES 16 A 429 THR ASN ASP ALA ARG ALA THR THR GLY THR LYS ILE LEU SEQRES 17 A 429 ALA GLY PHE PRO PRO TYR LYS ASN PHE ILE GLU GLU PHE SEQRES 18 A 429 ASP ALA SER ALA CYS ILE ASN THR ASP VAL VAL ALA MET SEQRES 19 A 429 ASP TYR ASP PHE SER TYR ALA PRO LEU VAL PRO GLN PHE SEQRES 20 A 429 ALA PRO VAL PRO ASN ASN LEU ILE THR GLN ASN TYR ASN SEQRES 21 A 429 ALA SER TYR PRO ALA GLY THR LYS ASN GLU VAL THR ALA SEQRES 22 A 429 VAL LYS THR THR ASP SER SER GLN ALA THR PRO PRO THR SEQRES 23 A 429 GLN VAL ARG ASN ALA PRO ARG LYS TYR ILE GLN GLY PRO SEQRES 24 A 429 ASN ALA ASP THR THR PHE PHE ASP GLU GLU GLN ASN TYR SEQRES 25 A 429 LEU ARG VAL PRO ILE GLU GLN GLY GLY ILE PHE GLU GLU SEQRES 26 A 429 VAL ASN VAL GLU THR VAL HIS ASP THR GLN MET PRO SER SEQRES 27 A 429 ILE ASN VAL GLY ILE ARG ALA VAL PRO LYS LEU THR THR SEQRES 28 A 429 ILE ASP GLU THR THR GLN ALA ASN SER TRP LEU ASP ALA SEQRES 29 A 429 GLN GLY TYR PHE GLU VAL ASP CYS VAL LEU THR THR GLU SEQRES 30 A 429 SER VAL ASP PRO TYR THR TYR ILE LYS GLY GLY CYS TYR SEQRES 31 A 429 SER ALA ASN THR LYS SER GLN LEU GLN TYR PHE ALA SER SEQRES 32 A 429 ASP GLY ARG PRO ILE ALA LYS VAL TYR ASP ASN PRO ASN SEQRES 33 A 429 VAL TYR GLY ARG MET GLN MET ILE LYS THR VAL LYS PRO SEQRES 1 B 3 DC DG DA SEQRES 1 C 9 DC DA DG DG DC DC DA DA DA SEQRES 1 D 5 DT DC DG DA DA FORMUL 5 HOH *80(H2 O) HELIX 1 AA1 TYR A 224 TYR A 228 5 5 HELIX 2 AA2 SER A 230 LYS A 238 1 9 HELIX 3 AA3 ILE A 285 ILE A 288 5 4 HELIX 4 AA4 THR A 315 GLY A 329 1 15 HELIX 5 AA5 ASP A 336 LYS A 340 5 5 HELIX 6 AA6 PRO A 342 GLY A 347 1 6 HELIX 7 AA7 PRO A 377 ILE A 382 5 6 HELIX 8 AA8 SER A 388 CYS A 390 5 3 HELIX 9 AA9 PRO A 415 ILE A 419 5 5 HELIX 10 AB1 THR A 467 GLU A 472 1 6 HELIX 11 AB2 ALA A 556 LYS A 559 5 4 SHEET 1 AA1 4 ARG A 258 VAL A 259 0 SHEET 2 AA1 4 ALA A 528 TYR A 546 -1 O GLN A 529 N ARG A 258 SHEET 3 AA1 4 HIS A 175 SER A 192 -1 N TRP A 187 O VAL A 534 SHEET 4 AA1 4 ILE A 350 TYR A 351 1 O ILE A 350 N LEU A 190 SHEET 1 AA2 4 ARG A 258 VAL A 259 0 SHEET 2 AA2 4 ALA A 528 TYR A 546 -1 O GLN A 529 N ARG A 258 SHEET 3 AA2 4 PHE A 244 THR A 254 -1 N ARG A 253 O GLU A 533 SHEET 4 AA2 4 THR A 393 ASP A 401 -1 O VAL A 396 N ILE A 252 SHEET 1 AA3 4 ILE A 198 GLU A 201 0 SHEET 2 AA3 4 ARG A 210 LEU A 213 -1 O ALA A 212 N LEU A 199 SHEET 3 AA3 4 TYR A 355 ASN A 361 -1 O THR A 360 N TRP A 211 SHEET 4 AA3 4 SER A 293 ARG A 296 -1 N ARG A 296 O TYR A 355 SHEET 1 AA4 4 ALA A 218 SER A 219 0 SHEET 2 AA4 4 ILE A 503 ILE A 507 -1 O VAL A 505 N ALA A 218 SHEET 3 AA4 4 PHE A 278 LYS A 283 -1 N GLN A 280 O GLY A 506 SHEET 4 AA4 4 GLU A 383 ASP A 386 -1 O GLU A 383 N VAL A 281 SHEET 1 AA5 2 TYR A 298 TYR A 300 0 SHEET 2 AA5 2 PRO A 308 PHE A 311 -1 O THR A 309 N THR A 299 SHEET 1 AA6 2 ALA A 437 THR A 440 0 SHEET 2 AA6 2 THR A 450 ARG A 453 -1 O VAL A 452 N VAL A 438 SHEET 1 AA7 3 ARG A 457 TYR A 459 0 SHEET 2 AA7 3 GLN A 561 TYR A 564 -1 O GLN A 563 N LYS A 458 SHEET 3 AA7 3 PHE A 487 GLU A 489 -1 N GLU A 488 O LEU A 562 SHEET 1 AA8 2 VAL A 510 PRO A 511 0 SHEET 2 AA8 2 TRP A 525 LEU A 526 -1 O LEU A 526 N VAL A 510 SHEET 1 AA9 2 ILE A 572 LYS A 574 0 SHEET 2 AA9 2 MET A 587 LYS A 589 -1 O ILE A 588 N ALA A 573 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000