HEADER TOXIN,HYDROLASE/INHIBITOR 27-JUN-23 8TAB TITLE RTA-PD00589 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RICIN A CHAIN; COMPND 3 CHAIN: A; COMPND 4 EC: 3.2.2.22; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RICINUS COMMUNIS; SOURCE 3 ORGANISM_COMMON: CASTOR BEAN; SOURCE 4 ORGANISM_TAXID: 3988; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS N-GLYCOSIDASE, INHIBITOR, TOXIN, HYDROLASE-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.J.RUDOLPH,N.TUMER REVDAT 1 01-MAY-24 8TAB 0 JRNL AUTH M.J.RUDOLPH,A.DUTTA,A.M.TSYMBAL,J.E.MCLAUGHLIN,Y.CHEN, JRNL AUTH 2 S.A.DAVIS,S.A.THEODOROUS,M.PIERCE,B.ALGAVA,X.ZHANG, JRNL AUTH 3 Z.SZEKELY,J.Y.ROBERGE,X.P.LI,N.E.TUMER JRNL TITL STRUCTURE-BASED DESIGN AND OPTIMIZATION OF A NEW CLASS OF JRNL TITL 2 SMALL MOLECULE INHIBITORS TARGETING THE P-STALK BINDING JRNL TITL 3 POCKET OF RICIN. JRNL REF BIOORG.MED.CHEM. V. 100 17614 2024 JRNL REFN ESSN 1464-3391 JRNL PMID 38340640 JRNL DOI 10.1016/J.BMC.2024.117614 REMARK 2 REMARK 2 RESOLUTION. 2.26 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.26 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.83 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 22183 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 1120 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 10.0000 - 4.5200 1.00 2868 165 0.1631 0.2000 REMARK 3 2 4.5100 - 3.5800 0.99 2695 143 0.1467 0.1785 REMARK 3 3 3.5800 - 3.1300 1.00 2674 139 0.1885 0.2050 REMARK 3 4 3.1300 - 2.8500 1.00 2677 146 0.2023 0.2618 REMARK 3 5 2.8400 - 2.6400 1.00 2624 145 0.2160 0.2367 REMARK 3 6 2.6400 - 2.4900 1.00 2645 138 0.2280 0.2638 REMARK 3 7 2.4900 - 2.3600 0.99 2619 128 0.2485 0.2955 REMARK 3 8 2.3600 - 2.2600 0.86 2261 116 0.2333 0.2668 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.560 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 NULL REMARK 3 ANGLE : 0.609 NULL REMARK 3 CHIRALITY : 0.041 318 REMARK 3 PLANARITY : 0.006 380 REMARK 3 DIHEDRAL : 7.528 304 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 4 THROUGH 32 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.4844 75.2222 -12.5624 REMARK 3 T TENSOR REMARK 3 T11: 0.1971 T22: 0.2864 REMARK 3 T33: 0.4427 T12: -0.0611 REMARK 3 T13: 0.0301 T23: 0.0320 REMARK 3 L TENSOR REMARK 3 L11: 2.2808 L22: 2.4377 REMARK 3 L33: 6.9437 L12: 0.2894 REMARK 3 L13: 1.0287 L23: 0.9516 REMARK 3 S TENSOR REMARK 3 S11: 0.2316 S12: 0.0085 S13: 0.4363 REMARK 3 S21: -0.0239 S22: -0.1882 S23: -0.3051 REMARK 3 S31: -0.2449 S32: 0.3216 S33: -0.0600 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 33 THROUGH 56 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.0790 72.0392 4.0345 REMARK 3 T TENSOR REMARK 3 T11: 0.2638 T22: 0.5142 REMARK 3 T33: 0.3400 T12: -0.0696 REMARK 3 T13: -0.0784 T23: -0.0532 REMARK 3 L TENSOR REMARK 3 L11: 4.9963 L22: 5.9124 REMARK 3 L33: 4.1797 L12: -2.9432 REMARK 3 L13: -2.9106 L23: 2.0798 REMARK 3 S TENSOR REMARK 3 S11: -0.3708 S12: -1.0872 S13: 0.3612 REMARK 3 S21: 0.5657 S22: 0.3013 S23: -0.9727 REMARK 3 S31: -0.0516 S32: 0.6855 S33: 0.0709 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 57 THROUGH 97 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.9960 73.1484 -3.0880 REMARK 3 T TENSOR REMARK 3 T11: 0.2252 T22: 0.2380 REMARK 3 T33: 0.5088 T12: -0.0238 REMARK 3 T13: 0.0613 T23: -0.0225 REMARK 3 L TENSOR REMARK 3 L11: 3.4310 L22: 0.3573 REMARK 3 L33: 3.8495 L12: -0.6983 REMARK 3 L13: 1.9161 L23: 0.2240 REMARK 3 S TENSOR REMARK 3 S11: 0.0328 S12: -0.0304 S13: 0.0394 REMARK 3 S21: 0.0226 S22: 0.0408 S23: 0.0939 REMARK 3 S31: -0.1912 S32: 0.1741 S33: -0.0636 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 98 THROUGH 122 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.8788 74.2473 6.4882 REMARK 3 T TENSOR REMARK 3 T11: 0.2230 T22: 0.2990 REMARK 3 T33: 0.4127 T12: -0.0597 REMARK 3 T13: 0.0454 T23: -0.0401 REMARK 3 L TENSOR REMARK 3 L11: 7.7579 L22: 3.9982 REMARK 3 L33: 7.2509 L12: -0.7564 REMARK 3 L13: -1.5579 L23: 2.2314 REMARK 3 S TENSOR REMARK 3 S11: 0.2361 S12: -0.5844 S13: 0.5141 REMARK 3 S21: 0.5152 S22: 0.0198 S23: 0.4865 REMARK 3 S31: -0.1875 S32: 0.3628 S33: -0.1964 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 123 THROUGH 140 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.4826 55.2758 -6.5854 REMARK 3 T TENSOR REMARK 3 T11: 0.2393 T22: 0.2564 REMARK 3 T33: 0.6125 T12: -0.0348 REMARK 3 T13: 0.0189 T23: 0.0017 REMARK 3 L TENSOR REMARK 3 L11: 3.9015 L22: 1.5992 REMARK 3 L33: 8.8737 L12: 0.9281 REMARK 3 L13: -4.6758 L23: -2.0540 REMARK 3 S TENSOR REMARK 3 S11: -0.0789 S12: -0.0405 S13: -0.2005 REMARK 3 S21: -0.0703 S22: 0.0550 S23: 0.3134 REMARK 3 S31: 0.5433 S32: 0.0223 S33: 0.0658 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 141 THROUGH 219 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.3830 61.9507 -10.7051 REMARK 3 T TENSOR REMARK 3 T11: 0.1955 T22: 0.2404 REMARK 3 T33: 0.4467 T12: -0.0297 REMARK 3 T13: 0.0051 T23: 0.0227 REMARK 3 L TENSOR REMARK 3 L11: 2.5530 L22: 0.6594 REMARK 3 L33: 0.6016 L12: -0.1223 REMARK 3 L13: 0.0318 L23: 0.0160 REMARK 3 S TENSOR REMARK 3 S11: -0.0171 S12: -0.0375 S13: -0.3566 REMARK 3 S21: 0.0117 S22: 0.0351 S23: 0.1500 REMARK 3 S31: 0.0339 S32: -0.0178 S33: -0.0157 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 220 THROUGH 261 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.4407 53.4932 -2.3050 REMARK 3 T TENSOR REMARK 3 T11: 0.2056 T22: 0.4048 REMARK 3 T33: 0.5849 T12: -0.0002 REMARK 3 T13: 0.0433 T23: 0.1239 REMARK 3 L TENSOR REMARK 3 L11: 4.4620 L22: 3.1930 REMARK 3 L33: 2.3414 L12: 0.8034 REMARK 3 L13: 1.8072 L23: 1.2716 REMARK 3 S TENSOR REMARK 3 S11: 0.0792 S12: -0.4658 S13: -0.6993 REMARK 3 S21: 0.3189 S22: 0.0112 S23: -0.4385 REMARK 3 S31: 0.2995 S32: 0.0067 S33: -0.1619 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8TAB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-JUL-23. REMARK 100 THE DEPOSITION ID IS D_1000275555. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-MAR-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22196 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 10.30 REMARK 200 R MERGE (I) : 0.20000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.29 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.6 REMARK 200 DATA REDUNDANCY IN SHELL : 7.90 REMARK 200 R MERGE FOR SHELL (I) : 1.42200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200 MM MG(NO3)2 AND 20% PEG 3350, PH REMARK 280 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 27.95650 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 27.95650 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 27.95650 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 27.95650 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 27.95650 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 27.95650 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 442 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O1 EDO A 306 O1 EDO A 306 11554 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 40 -170.00 -108.20 REMARK 500 ILE A 175 -63.59 -123.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 2PE A 307 DBREF 8TAB A 4 261 UNP P02879 RICI_RICCO 39 296 SEQRES 1 A 258 LYS GLN TYR PRO ILE ILE ASN PHE THR THR ALA GLY ALA SEQRES 2 A 258 THR VAL GLN SER TYR THR ASN PHE ILE ARG ALA VAL ARG SEQRES 3 A 258 GLY ARG LEU THR THR GLY ALA ASP VAL ARG HIS GLU ILE SEQRES 4 A 258 PRO VAL LEU PRO ASN ARG VAL GLY LEU PRO ILE ASN GLN SEQRES 5 A 258 ARG PHE ILE LEU VAL GLU LEU SER ASN HIS ALA GLU LEU SEQRES 6 A 258 SER VAL THR LEU ALA LEU ASP VAL THR ASN ALA TYR VAL SEQRES 7 A 258 VAL GLY TYR ARG ALA GLY ASN SER ALA TYR PHE PHE HIS SEQRES 8 A 258 PRO ASP ASN GLN GLU ASP ALA GLU ALA ILE THR HIS LEU SEQRES 9 A 258 PHE THR ASP VAL GLN ASN ARG TYR THR PHE ALA PHE GLY SEQRES 10 A 258 GLY ASN TYR ASP ARG LEU GLU GLN LEU ALA GLY ASN LEU SEQRES 11 A 258 ARG GLU ASN ILE GLU LEU GLY ASN GLY PRO LEU GLU GLU SEQRES 12 A 258 ALA ILE SER ALA LEU TYR TYR TYR SER THR GLY GLY THR SEQRES 13 A 258 GLN LEU PRO THR LEU ALA ARG SER PHE ILE ILE CYS ILE SEQRES 14 A 258 GLN MET ILE SER GLU ALA ALA ARG PHE GLN TYR ILE GLU SEQRES 15 A 258 GLY GLU MET ARG THR ARG ILE ARG TYR ASN ARG ARG SER SEQRES 16 A 258 ALA PRO ASP PRO SER VAL ILE THR LEU GLU ASN SER TRP SEQRES 17 A 258 GLY ARG LEU SER THR ALA ILE GLN GLU SER ASN GLN GLY SEQRES 18 A 258 ALA PHE ALA SER PRO ILE GLN LEU GLN ARG ARG ASN GLY SEQRES 19 A 258 SER LYS PHE SER VAL TYR ASP VAL SER ILE LEU ILE PRO SEQRES 20 A 258 ILE ILE ALA LEU MET VAL TYR ARG CYS ALA PRO HET CL A 301 1 HET CL A 302 1 HET CL A 303 1 HET U4T A 304 16 HET EDO A 305 4 HET EDO A 306 4 HET 2PE A 307 7 HETNAM CL CHLORIDE ION HETNAM U4T 4H,5H-NAPHTHO[1,2-B]THIOPHENE-2-CARBOXYLIC ACID HETNAM EDO 1,2-ETHANEDIOL HETNAM 2PE NONAETHYLENE GLYCOL HETSYN U4T 4,5-DIHYDRONAPHTHO[1,2-B]THIOPHENE-2-CARBOXYLIC ACID; HETSYN 2 U4T 4,5-DIHYDROBENZO[G][1]BENZOTHIOLE-2-CARBOXYLIC ACID HETSYN EDO ETHYLENE GLYCOL FORMUL 2 CL 3(CL 1-) FORMUL 5 U4T C13 H10 O2 S FORMUL 6 EDO 2(C2 H6 O2) FORMUL 8 2PE C18 H38 O10 FORMUL 9 HOH *162(H2 O) HELIX 1 AA1 THR A 17 THR A 33 1 17 HELIX 2 AA2 PRO A 52 GLN A 55 5 4 HELIX 3 AA3 ASN A 97 ILE A 104 1 8 HELIX 4 AA4 THR A 105 LEU A 107 5 3 HELIX 5 AA5 ASN A 122 GLY A 131 1 10 HELIX 6 AA6 LEU A 133 ILE A 137 5 5 HELIX 7 AA7 GLY A 140 TYR A 154 1 15 HELIX 8 AA8 GLN A 160 ILE A 175 1 16 HELIX 9 AA9 ILE A 175 PHE A 181 1 7 HELIX 10 AB1 PHE A 181 TYR A 194 1 14 HELIX 11 AB2 ASP A 201 GLU A 220 1 20 HELIX 12 AB3 SER A 246 ILE A 249 5 4 SHEET 1 AA1 6 ILE A 8 THR A 12 0 SHEET 2 AA1 6 PHE A 57 SER A 63 1 O GLU A 61 N ILE A 9 SHEET 3 AA1 6 SER A 69 ASP A 75 -1 O LEU A 72 N VAL A 60 SHEET 4 AA1 6 VAL A 81 ALA A 86 -1 O GLY A 83 N ALA A 73 SHEET 5 AA1 6 SER A 89 PHE A 92 -1 O TYR A 91 N TYR A 84 SHEET 6 AA1 6 ASN A 113 THR A 116 1 O TYR A 115 N ALA A 90 SHEET 1 AA2 2 ALA A 225 GLN A 233 0 SHEET 2 AA2 2 LYS A 239 ASP A 244 -1 O TYR A 243 N PHE A 226 SSBOND 1 CYS A 259 CYS A 259 1555 11555 2.04 CRYST1 169.146 169.146 55.913 90.00 90.00 120.00 P 63 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005912 0.003413 0.000000 0.00000 SCALE2 0.000000 0.006827 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017885 0.00000