HEADER DE NOVO PROTEIN/DNA 27-JUN-23 8TAC TITLE DESIGNED DNA BINDING PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: DBP48; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA (5'-D(*AP*CP*CP*TP*GP*AP*CP*GP*CP*GP*A)-3'); COMPND 7 CHAIN: C; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: DNA (5'-D(*TP*TP*CP*GP*CP*GP*TP*CP*AP*GP*GP)-3'); COMPND 11 CHAIN: D; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 3 ORGANISM_TAXID: 32630; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 MOL_ID: 2; SOURCE 7 SYNTHETIC: YES; SOURCE 8 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 9 ORGANISM_TAXID: 32630; SOURCE 10 MOL_ID: 3; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 13 ORGANISM_TAXID: 32630 KEYWDS DNA BINDING, COMPUTATIONAL DESIGN, PROTEIN-DNA COMPLEX, DOCKING, DE KEYWDS 2 NOVO PROTEIN, DE NOVO PROTEIN-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR L.DOYLE,B.L.STODDARD,C.J.GLASSCOCK,R.P.MCHUGH,R.J.PECORARO REVDAT 1 28-AUG-24 8TAC 0 JRNL AUTH L.DOYLE,B.L.STODDARD JRNL TITL DESIGNED DNA BINDING PROTEIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.34 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18_3855 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.34 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 52.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.400 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 7879 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.248 REMARK 3 R VALUE (WORKING SET) : 0.244 REMARK 3 FREE R VALUE : 0.279 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1545 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 52.0000 - 5.2100 1.00 1279 145 0.2047 0.2176 REMARK 3 2 5.2000 - 4.1300 0.99 1257 137 0.2097 0.2648 REMARK 3 3 4.1300 - 3.6100 1.00 1260 139 0.2116 0.2472 REMARK 3 4 3.6100 - 3.2800 1.00 1289 142 0.2081 0.2416 REMARK 3 5 3.2800 - 3.0400 0.99 1249 140 0.2265 0.3176 REMARK 3 6 3.0400 - 2.8600 0.99 1266 142 0.2933 0.2907 REMARK 3 7 2.8600 - 2.7200 0.99 1287 144 0.3027 0.2959 REMARK 3 8 2.7200 - 2.6000 0.98 1215 136 0.3095 0.3672 REMARK 3 9 2.6000 - 2.5000 0.98 1276 142 0.3238 0.3202 REMARK 3 10 2.5000 - 2.4200 1.00 1299 144 0.3042 0.3670 REMARK 3 11 2.4200 - 2.3400 0.99 1205 134 0.3236 0.3674 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.440 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.210 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.43 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 1426 REMARK 3 ANGLE : 0.579 2008 REMARK 3 CHIRALITY : 0.036 240 REMARK 3 PLANARITY : 0.002 192 REMARK 3 DIHEDRAL : 29.096 347 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 0 THROUGH 22 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.2702 14.4172 2.0809 REMARK 3 T TENSOR REMARK 3 T11: 0.2437 T22: 0.2258 REMARK 3 T33: 0.4149 T12: -0.0829 REMARK 3 T13: -0.0629 T23: 0.0178 REMARK 3 L TENSOR REMARK 3 L11: 3.2585 L22: 0.3211 REMARK 3 L33: 5.9952 L12: -0.5380 REMARK 3 L13: -1.5694 L23: 1.0558 REMARK 3 S TENSOR REMARK 3 S11: 0.0911 S12: 0.0238 S13: -0.3326 REMARK 3 S21: -0.2140 S22: -0.1344 S23: -0.0833 REMARK 3 S31: -0.7576 S32: 0.6423 S33: 0.0911 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 23 THROUGH 46 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.6288 11.7465 5.5802 REMARK 3 T TENSOR REMARK 3 T11: 0.1984 T22: 0.2065 REMARK 3 T33: 0.5519 T12: 0.0217 REMARK 3 T13: 0.0283 T23: 0.0202 REMARK 3 L TENSOR REMARK 3 L11: 3.0208 L22: 2.2079 REMARK 3 L33: 4.0855 L12: -2.5624 REMARK 3 L13: -2.9883 L23: 2.3457 REMARK 3 S TENSOR REMARK 3 S11: -0.7382 S12: 0.0340 S13: -0.5920 REMARK 3 S21: 0.3998 S22: 0.0956 S23: 1.0520 REMARK 3 S31: 0.4925 S32: -0.1394 S33: 0.4540 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 47 THROUGH 52 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.8969 9.2996 -2.8507 REMARK 3 T TENSOR REMARK 3 T11: 0.4347 T22: 0.2974 REMARK 3 T33: 0.2899 T12: 0.2361 REMARK 3 T13: 0.0294 T23: 0.0202 REMARK 3 L TENSOR REMARK 3 L11: 5.3392 L22: 4.9208 REMARK 3 L33: 2.8323 L12: 0.4313 REMARK 3 L13: -0.9035 L23: -2.5505 REMARK 3 S TENSOR REMARK 3 S11: 0.2332 S12: 0.1639 S13: 0.6644 REMARK 3 S21: -0.3849 S22: 0.2155 S23: -0.4447 REMARK 3 S31: 0.7020 S32: 0.2771 S33: -0.2427 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 53 THROUGH 65 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.5775 21.2851 -1.0804 REMARK 3 T TENSOR REMARK 3 T11: 0.1467 T22: 0.2221 REMARK 3 T33: 0.2847 T12: 0.0077 REMARK 3 T13: 0.0401 T23: 0.0484 REMARK 3 L TENSOR REMARK 3 L11: 3.7445 L22: 5.2116 REMARK 3 L33: 6.5984 L12: 0.1887 REMARK 3 L13: -1.9357 L23: 1.4840 REMARK 3 S TENSOR REMARK 3 S11: 0.3479 S12: 0.5435 S13: 0.7934 REMARK 3 S21: 0.0136 S22: -0.0688 S23: 0.4720 REMARK 3 S31: -0.5253 S32: -0.2736 S33: -0.3059 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 23 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.1029 34.9525 16.7320 REMARK 3 T TENSOR REMARK 3 T11: 0.1983 T22: 0.3384 REMARK 3 T33: 0.4213 T12: -0.0564 REMARK 3 T13: -0.0413 T23: 0.1038 REMARK 3 L TENSOR REMARK 3 L11: 2.4416 L22: 3.5138 REMARK 3 L33: 3.6141 L12: 0.2962 REMARK 3 L13: 0.0172 L23: 0.8500 REMARK 3 S TENSOR REMARK 3 S11: -0.1431 S12: -0.2610 S13: -0.5829 REMARK 3 S21: 0.3758 S22: 0.2056 S23: -0.5781 REMARK 3 S31: 0.3650 S32: 0.3458 S33: 0.0502 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 24 THROUGH 52 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.1420 39.2520 13.1531 REMARK 3 T TENSOR REMARK 3 T11: 0.1604 T22: 0.1961 REMARK 3 T33: 0.2870 T12: 0.0137 REMARK 3 T13: -0.0340 T23: 0.0139 REMARK 3 L TENSOR REMARK 3 L11: 3.9675 L22: 3.3057 REMARK 3 L33: 2.8664 L12: 0.2799 REMARK 3 L13: 0.9338 L23: -0.0038 REMARK 3 S TENSOR REMARK 3 S11: -0.2160 S12: -0.5125 S13: -0.6546 REMARK 3 S21: 0.0907 S22: 0.1297 S23: -0.1144 REMARK 3 S31: 0.4032 S32: -0.0388 S33: 0.1506 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 53 THROUGH 65 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.0635 29.2624 17.1271 REMARK 3 T TENSOR REMARK 3 T11: 0.7053 T22: -0.0612 REMARK 3 T33: 0.3952 T12: -0.0342 REMARK 3 T13: 0.1507 T23: -0.1291 REMARK 3 L TENSOR REMARK 3 L11: 1.0205 L22: 1.6431 REMARK 3 L33: 0.7660 L12: -0.2687 REMARK 3 L13: -0.1002 L23: -0.6540 REMARK 3 S TENSOR REMARK 3 S11: 0.2564 S12: 0.0374 S13: -0.4099 REMARK 3 S21: 0.4043 S22: -0.0524 S23: 0.2672 REMARK 3 S31: 0.3662 S32: -0.0699 S33: 0.2820 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 71 THROUGH 81 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.2178 51.1636 11.0609 REMARK 3 T TENSOR REMARK 3 T11: 0.3314 T22: 0.4388 REMARK 3 T33: 0.1735 T12: -0.0549 REMARK 3 T13: 0.0019 T23: 0.0808 REMARK 3 L TENSOR REMARK 3 L11: 0.4750 L22: 1.7397 REMARK 3 L33: 3.0430 L12: -0.8682 REMARK 3 L13: -0.5441 L23: 1.2462 REMARK 3 S TENSOR REMARK 3 S11: 0.3409 S12: 0.1635 S13: -0.0523 REMARK 3 S21: -0.4758 S22: 0.0216 S23: 0.0411 REMARK 3 S31: -0.4323 S32: -0.5180 S33: -0.1176 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 79 THROUGH 88 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.1182 51.1730 12.9785 REMARK 3 T TENSOR REMARK 3 T11: 0.2454 T22: 0.3020 REMARK 3 T33: 0.3630 T12: 0.1073 REMARK 3 T13: 0.0183 T23: 0.0608 REMARK 3 L TENSOR REMARK 3 L11: 1.2546 L22: 1.8950 REMARK 3 L33: 2.0915 L12: 0.0877 REMARK 3 L13: -0.6545 L23: -0.8328 REMARK 3 S TENSOR REMARK 3 S11: 0.3959 S12: 0.1483 S13: 0.1149 REMARK 3 S21: -0.2834 S22: -0.1008 S23: 0.4387 REMARK 3 S31: 0.3480 S32: 0.1919 S33: -0.1977 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8TAC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-JUL-23. REMARK 100 THE DEPOSITION ID IS D_1000275535. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-MAY-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9774 REMARK 200 MONOCHROMATOR : SI(220) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS 3.8 REMARK 200 DATA SCALING SOFTWARE : DIALS 3.8 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 7888 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.340 REMARK 200 RESOLUTION RANGE LOW (A) : 52.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 6.200 REMARK 200 R MERGE (I) : 0.18320 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.3800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.34 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.20 REMARK 200 R MERGE FOR SHELL (I) : 0.29970 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.050 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.3 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM ACETATE, 0.1 M SODIUM REMARK 280 ACETATE PH 4.6, 28% PEG 4000, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 300K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 51.99800 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 -51.99800 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 -5.40074 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 -51.99800 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 32.37766 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -1 REMARK 465 SER A 67 REMARK 465 GLY A 68 REMARK 465 SER B -1 REMARK 465 GLY B 66 REMARK 465 SER B 67 REMARK 465 GLY B 68 REMARK 465 DT D 78 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 5 CD OE1 OE2 REMARK 470 LYS A 14 CD CE NZ REMARK 470 LYS A 17 CG CD CE NZ REMARK 470 LYS A 21 CG CD CE NZ REMARK 470 SER A 52 OG REMARK 470 GLU A 53 CG CD OE1 OE2 REMARK 470 GLU A 54 CG CD OE1 OE2 REMARK 470 LYS A 57 CG CD CE NZ REMARK 470 LYS A 58 CG CD CE NZ REMARK 470 LYS A 60 CE NZ REMARK 470 LEU A 63 CG CD1 CD2 REMARK 470 MET B 1 CG SD CE REMARK 470 ILE B 6 CD1 REMARK 470 GLU B 8 CD OE1 OE2 REMARK 470 LYS B 10 CG CD CE NZ REMARK 470 ILE B 12 CD1 REMARK 470 LYS B 14 CG CD CE NZ REMARK 470 LYS B 17 CE NZ REMARK 470 LYS B 21 CG CD CE NZ REMARK 470 ARG B 28 CD NE CZ NH1 NH2 REMARK 470 GLU B 32 CG CD OE1 OE2 REMARK 470 LYS B 33 CE NZ REMARK 470 ARG B 48 NE CZ NH1 NH2 REMARK 470 GLU B 53 CG CD OE1 OE2 REMARK 470 GLU B 54 CG CD OE1 OE2 REMARK 470 LEU B 56 CG CD1 CD2 REMARK 470 LYS B 57 CG CD CE NZ REMARK 470 LYS B 60 CG CD CE NZ REMARK 470 VAL B 65 CG1 CG2 REMARK 470 DA C 81 N9 C8 N7 C5 C6 N6 N1 REMARK 470 DA C 81 C2 N3 C4 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HE ARG A 48 O HOH A 102 1.54 REMARK 500 H LEU A 55 O HOH A 106 1.58 REMARK 500 HZ2 LYS A 10 O HOH A 101 1.59 REMARK 500 O HOH B 101 O HOH B 112 1.99 REMARK 500 NZ LYS A 10 O HOH A 101 2.03 REMARK 500 O HOH A 101 O HOH A 122 2.08 REMARK 500 O HOH D 106 O HOH D 113 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH2 ARG A 48 OP1 DA C 81 2546 2.01 REMARK 500 OG SER A 42 OP2 DG C 80 2546 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET B 1 164.42 74.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 128 DISTANCE = 6.29 ANGSTROMS DBREF 8TAC A -1 68 PDB 8TAC 8TAC -1 68 DBREF 8TAC B -1 68 PDB 8TAC 8TAC -1 68 DBREF 8TAC C 71 81 PDB 8TAC 8TAC 71 81 DBREF 8TAC D 78 88 PDB 8TAC 8TAC 78 88 SEQRES 1 A 70 SER GLY MET THR PRO GLU GLU ILE ALA GLU ALA LYS ARG SEQRES 2 A 70 ILE GLY LYS GLU VAL LYS GLU ARG ARG LYS GLU LEU GLY SEQRES 3 A 70 LEU THR GLN ARG GLU LEU ALA GLU LYS LEU GLY VAL SER SEQRES 4 A 70 ARG SER THR VAL SER ASP ILE GLU ASN GLY ARG ARG LEU SEQRES 5 A 70 PRO SER GLU GLU LEU LEU LYS LYS ILE LYS GLU ILE LEU SEQRES 6 A 70 GLY VAL GLY SER GLY SEQRES 1 B 70 SER GLY MET THR PRO GLU GLU ILE ALA GLU ALA LYS ARG SEQRES 2 B 70 ILE GLY LYS GLU VAL LYS GLU ARG ARG LYS GLU LEU GLY SEQRES 3 B 70 LEU THR GLN ARG GLU LEU ALA GLU LYS LEU GLY VAL SER SEQRES 4 B 70 ARG SER THR VAL SER ASP ILE GLU ASN GLY ARG ARG LEU SEQRES 5 B 70 PRO SER GLU GLU LEU LEU LYS LYS ILE LYS GLU ILE LEU SEQRES 6 B 70 GLY VAL GLY SER GLY SEQRES 1 C 11 DA DC DC DT DG DA DC DG DC DG DA SEQRES 1 D 11 DT DT DC DG DC DG DT DC DA DG DG FORMUL 5 HOH *68(H2 O) HELIX 1 AA1 THR A 2 LEU A 23 1 22 HELIX 2 AA2 THR A 26 GLY A 35 1 10 HELIX 3 AA3 SER A 37 ASN A 46 1 10 HELIX 4 AA4 SER A 52 LEU A 63 1 12 HELIX 5 AA5 THR B 2 LEU B 23 1 22 HELIX 6 AA6 THR B 26 LEU B 34 1 9 HELIX 7 AA7 SER B 37 ASN B 46 1 10 HELIX 8 AA8 SER B 52 LEU B 63 1 12 CRYST1 28.352 103.996 32.825 90.00 99.47 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.035271 0.000000 0.005883 0.00000 SCALE2 0.000000 0.009616 0.000000 0.00000 SCALE3 0.000000 0.000000 0.030885 0.00000