HEADER HYDROLASE/INHIBITOR 28-JUN-23 8TBI TITLE TRICOMPLEX OF RMC-7977, NRAS WT, AND CYPA COMPND MOL_ID: 1; COMPND 2 MOLECULE: GTPASE NRAS; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: TRANSFORMING PROTEIN N-RAS; COMPND 5 EC: 3.6.5.2; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: PEPTIDYL-PROLYL CIS-TRANS ISOMERASE A; COMPND 9 CHAIN: C, D; COMPND 10 SYNONYM: PPIASE A,CYCLOPHILIN A,CYCLOSPORIN A-BINDING PROTEIN, COMPND 11 ROTAMASE A; COMPND 12 EC: 5.2.1.8; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NRAS, HRAS1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: PPIA, CYPA; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS INHIBITOR, COMPLEX, SMALL GTPASE, CANCER, TRICOMPLEX, HYDROLASE- KEYWDS 2 INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.C.A.TOMLINSON,A.CHEN,J.E.KNOX,J.K.YANO REVDAT 2 24-APR-24 8TBI 1 JRNL REVDAT 1 07-FEB-24 8TBI 0 JRNL AUTH M.HOLDERFIELD,B.J.LEE,J.JIANG,A.TOMLINSON,K.J.SEAMON,A.MIRA, JRNL AUTH 2 E.PATRUCCO,G.GOODHART,J.DILLY,Y.GINDIN,N.DINGLASAN,Y.WANG, JRNL AUTH 3 L.P.LAI,S.CAI,L.JIANG,N.NASHOLM,N.SHIFRIN,C.BLAJ,H.SHAH, JRNL AUTH 4 J.W.EVANS,N.MONTAZER,O.LAI,J.SHI,E.AHLER,E.QUINTANA,S.CHANG, JRNL AUTH 5 A.SALVADOR,A.MARQUEZ,J.CREGG,Y.LIU,A.MILIN,A.CHEN,T.B.ZIV, JRNL AUTH 6 D.PARSONS,J.E.KNOX,J.E.KLOMP,J.ROTH,M.REES,M.RONAN, JRNL AUTH 7 A.CUEVAS-NAVARRO,F.HU,P.LITO,D.SANTAMARIA,A.J.AGUIRRE, JRNL AUTH 8 A.M.WATERS,C.J.DER,C.AMBROGIO,Z.WANG,A.L.GILL,E.S.KOLTUN, JRNL AUTH 9 J.A.M.SMITH,D.WILDES,M.SINGH JRNL TITL CONCURRENT INHIBITION OF ONCOGENIC AND WILD-TYPE RAS-GTP FOR JRNL TITL 2 CANCER THERAPY. JRNL REF NATURE 2024 JRNL REFN ESSN 1476-4687 JRNL PMID 38589574 JRNL DOI 10.1038/S41586-024-07205-6 REMARK 2 REMARK 2 RESOLUTION. 1.59 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.59 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.86 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 94238 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 4743 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 25.8600 - 4.9300 1.00 3246 146 0.1601 0.1689 REMARK 3 2 4.9300 - 3.9200 1.00 3067 170 0.1353 0.1359 REMARK 3 3 3.9200 - 3.4200 1.00 3046 162 0.1482 0.1735 REMARK 3 4 3.4200 - 3.1100 0.99 3017 139 0.1605 0.1969 REMARK 3 5 3.1100 - 2.8900 1.00 3016 164 0.1678 0.2039 REMARK 3 6 2.8900 - 2.7200 1.00 2975 175 0.1670 0.1935 REMARK 3 7 2.7200 - 2.5800 1.00 3023 151 0.1712 0.2007 REMARK 3 8 2.5800 - 2.4700 1.00 2995 152 0.1721 0.2380 REMARK 3 9 2.4700 - 2.3700 1.00 3014 140 0.1719 0.2152 REMARK 3 10 2.3700 - 2.2900 1.00 2947 166 0.1642 0.2155 REMARK 3 11 2.2900 - 2.2200 1.00 2967 187 0.1612 0.2093 REMARK 3 12 2.2200 - 2.1600 1.00 2989 167 0.1750 0.2322 REMARK 3 13 2.1600 - 2.1000 1.00 2930 178 0.1851 0.2149 REMARK 3 14 2.1000 - 2.0500 1.00 2967 147 0.1833 0.2157 REMARK 3 15 2.0500 - 2.0000 1.00 2962 174 0.2069 0.2331 REMARK 3 16 2.0000 - 1.9600 1.00 2991 163 0.2122 0.2360 REMARK 3 17 1.9600 - 1.9200 1.00 2932 151 0.2206 0.2419 REMARK 3 18 1.9200 - 1.8900 1.00 2996 157 0.2168 0.2746 REMARK 3 19 1.8900 - 1.8500 1.00 2958 151 0.2298 0.2837 REMARK 3 20 1.8500 - 1.8200 1.00 2938 166 0.2436 0.3065 REMARK 3 21 1.8200 - 1.7900 1.00 2951 176 0.2617 0.2778 REMARK 3 22 1.7900 - 1.7600 1.00 2937 169 0.2715 0.2506 REMARK 3 23 1.7600 - 1.7400 1.00 2942 168 0.2945 0.3089 REMARK 3 24 1.7400 - 1.7100 1.00 2959 149 0.3063 0.3768 REMARK 3 25 1.7100 - 1.6900 1.00 2963 134 0.3207 0.3238 REMARK 3 26 1.6900 - 1.6700 1.00 2964 141 0.3437 0.3295 REMARK 3 27 1.6700 - 1.6500 1.00 2975 143 0.3290 0.3186 REMARK 3 28 1.6500 - 1.6300 1.00 2983 144 0.3493 0.3565 REMARK 3 29 1.6300 - 1.6100 1.00 2928 155 0.3540 0.3843 REMARK 3 30 1.6100 - 1.5900 1.00 2917 158 0.3520 0.3868 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.221 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.413 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.38 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 5589 REMARK 3 ANGLE : 1.697 7572 REMARK 3 CHIRALITY : 0.095 810 REMARK 3 PLANARITY : 0.010 975 REMARK 3 DIHEDRAL : 14.797 2135 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 0 THROUGH 167) REMARK 3 ORIGIN FOR THE GROUP (A): -17.3908 18.5263 -20.8767 REMARK 3 T TENSOR REMARK 3 T11: 0.2007 T22: 0.1659 REMARK 3 T33: 0.1518 T12: -0.0266 REMARK 3 T13: 0.0101 T23: -0.0183 REMARK 3 L TENSOR REMARK 3 L11: 0.6192 L22: 0.9514 REMARK 3 L33: 0.5511 L12: 0.2563 REMARK 3 L13: -0.3772 L23: -0.2044 REMARK 3 S TENSOR REMARK 3 S11: 0.0345 S12: 0.0075 S13: -0.0492 REMARK 3 S21: 0.1992 S22: 0.0435 S23: -0.0257 REMARK 3 S31: -0.0595 S32: -0.0060 S33: 0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN 'B' AND RESID 0 THROUGH 169) REMARK 3 ORIGIN FOR THE GROUP (A): -21.0548 36.5188 -53.1391 REMARK 3 T TENSOR REMARK 3 T11: 0.1226 T22: 0.1219 REMARK 3 T33: 0.1453 T12: 0.0016 REMARK 3 T13: 0.0214 T23: -0.0049 REMARK 3 L TENSOR REMARK 3 L11: 0.3537 L22: 1.0712 REMARK 3 L33: 0.6162 L12: 0.0233 REMARK 3 L13: 0.0289 L23: -0.4745 REMARK 3 S TENSOR REMARK 3 S11: 0.0281 S12: -0.0136 S13: 0.0135 REMARK 3 S21: 0.0197 S22: 0.0296 S23: 0.0573 REMARK 3 S31: -0.0516 S32: -0.0168 S33: 0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN 'C' AND RESID 2 THROUGH 164) REMARK 3 ORIGIN FOR THE GROUP (A): -24.2388 3.2863 -52.8420 REMARK 3 T TENSOR REMARK 3 T11: 0.1397 T22: 0.1132 REMARK 3 T33: 0.1194 T12: 0.0115 REMARK 3 T13: -0.0235 T23: 0.0136 REMARK 3 L TENSOR REMARK 3 L11: 0.5654 L22: 0.5565 REMARK 3 L33: 0.4100 L12: 0.0633 REMARK 3 L13: 0.0122 L23: -0.4083 REMARK 3 S TENSOR REMARK 3 S11: 0.0112 S12: -0.0605 S13: -0.0476 REMARK 3 S21: -0.0779 S22: -0.0073 S23: 0.0212 REMARK 3 S31: 0.0634 S32: 0.0447 S33: 0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN 'D' AND RESID 1 THROUGH 165) REMARK 3 ORIGIN FOR THE GROUP (A): 9.9689 26.6689 -38.3401 REMARK 3 T TENSOR REMARK 3 T11: 0.1207 T22: 0.1562 REMARK 3 T33: 0.1343 T12: -0.0169 REMARK 3 T13: -0.0063 T23: -0.0135 REMARK 3 L TENSOR REMARK 3 L11: 0.5062 L22: 0.4750 REMARK 3 L33: 0.4707 L12: -0.1293 REMARK 3 L13: -0.0878 L23: 0.1044 REMARK 3 S TENSOR REMARK 3 S11: 0.0224 S12: 0.0411 S13: 0.0156 REMARK 3 S21: 0.0164 S22: -0.0588 S23: -0.0354 REMARK 3 S31: 0.0100 S32: -0.0003 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8TBI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-JUN-23. REMARK 100 THE DEPOSITION ID IS D_1000275609. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-MAY-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95371 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 94249 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.590 REMARK 200 RESOLUTION RANGE LOW (A) : 25.860 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.400 REMARK 200 R MERGE (I) : 0.11930 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.59 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.65 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 7.70 REMARK 200 R MERGE FOR SHELL (I) : 2.35600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.770 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 27% PEG4000, 0.1 M TRIS-HCL, PH 8.0, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 32.74500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 63.02000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.13500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 63.02000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.74500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.13500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 168 REMARK 465 LYS A 169 REMARK 465 LYS A 170 REMARK 465 LEU A 171 REMARK 465 ASN A 172 REMARK 465 LYS B 170 REMARK 465 LEU B 171 REMARK 465 ASN B 172 REMARK 465 SER C 0 REMARK 465 MET C 1 REMARK 465 GLU C 165 REMARK 465 SER D 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH D 320 O HOH D 505 1.96 REMARK 500 O HOH B 396 O HOH B 400 2.13 REMARK 500 O HOH C 477 O HOH C 497 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH C 482 O HOH D 429 4454 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 36 -62.95 -92.11 REMARK 500 GLU A 37 130.46 -174.43 REMARK 500 LYS A 117 31.26 73.82 REMARK 500 ASP B 108 73.99 -114.68 REMARK 500 LYS B 117 33.48 72.75 REMARK 500 THR B 122 45.96 -98.73 REMARK 500 PHE C 60 -69.54 -130.42 REMARK 500 PHE C 60 -70.20 -130.42 REMARK 500 LYS C 133 -65.28 -95.55 REMARK 500 PHE D 60 -72.84 -130.14 REMARK 500 PHE D 60 -76.12 -130.14 REMARK 500 LYS D 133 -63.03 -100.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH C 513 DISTANCE = 5.95 ANGSTROMS REMARK 525 HOH D 524 DISTANCE = 6.69 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 17 OG REMARK 620 2 THR A 35 OG1 83.1 REMARK 620 3 GNP A 201 O1G 167.0 84.9 REMARK 620 4 GNP A 201 O2B 95.4 177.3 96.8 REMARK 620 5 HOH A 307 O 82.4 92.6 93.2 89.4 REMARK 620 6 HOH A 335 O 94.1 90.4 91.0 87.5 175.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 17 OG REMARK 620 2 THR B 35 OG1 80.7 REMARK 620 3 GNP B 201 O1G 171.2 91.1 REMARK 620 4 GNP B 201 O2B 91.5 172.2 96.7 REMARK 620 5 HOH B 337 O 84.2 88.0 92.3 91.3 REMARK 620 6 HOH B 356 O 91.1 90.6 92.3 89.5 175.2 REMARK 620 N 1 2 3 4 5 DBREF 8TBI A 1 172 UNP P01111 RASN_HUMAN 1 172 DBREF 8TBI B 1 172 UNP P01111 RASN_HUMAN 1 172 DBREF 8TBI C 1 165 UNP P62937 PPIA_HUMAN 1 165 DBREF 8TBI D 1 165 UNP P62937 PPIA_HUMAN 1 165 SEQADV 8TBI SER A 0 UNP P01111 EXPRESSION TAG SEQADV 8TBI SER B 0 UNP P01111 EXPRESSION TAG SEQADV 8TBI SER C 0 UNP P62937 EXPRESSION TAG SEQADV 8TBI SER D 0 UNP P62937 EXPRESSION TAG SEQRES 1 A 173 SER MET THR GLU TYR LYS LEU VAL VAL VAL GLY ALA GLY SEQRES 2 A 173 GLY VAL GLY LYS SER ALA LEU THR ILE GLN LEU ILE GLN SEQRES 3 A 173 ASN HIS PHE VAL ASP GLU TYR ASP PRO THR ILE GLU ASP SEQRES 4 A 173 SER TYR ARG LYS GLN VAL VAL ILE ASP GLY GLU THR CYS SEQRES 5 A 173 LEU LEU ASP ILE LEU ASP THR ALA GLY GLN GLU GLU TYR SEQRES 6 A 173 SER ALA MET ARG ASP GLN TYR MET ARG THR GLY GLU GLY SEQRES 7 A 173 PHE LEU CYS VAL PHE ALA ILE ASN ASN SER LYS SER PHE SEQRES 8 A 173 ALA ASP ILE ASN LEU TYR ARG GLU GLN ILE LYS ARG VAL SEQRES 9 A 173 LYS ASP SER ASP ASP VAL PRO MET VAL LEU VAL GLY ASN SEQRES 10 A 173 LYS CYS ASP LEU PRO THR ARG THR VAL ASP THR LYS GLN SEQRES 11 A 173 ALA HIS GLU LEU ALA LYS SER TYR GLY ILE PRO PHE ILE SEQRES 12 A 173 GLU THR SER ALA LYS THR ARG GLN GLY VAL GLU ASP ALA SEQRES 13 A 173 PHE TYR THR LEU VAL ARG GLU ILE ARG GLN TYR ARG MET SEQRES 14 A 173 LYS LYS LEU ASN SEQRES 1 B 173 SER MET THR GLU TYR LYS LEU VAL VAL VAL GLY ALA GLY SEQRES 2 B 173 GLY VAL GLY LYS SER ALA LEU THR ILE GLN LEU ILE GLN SEQRES 3 B 173 ASN HIS PHE VAL ASP GLU TYR ASP PRO THR ILE GLU ASP SEQRES 4 B 173 SER TYR ARG LYS GLN VAL VAL ILE ASP GLY GLU THR CYS SEQRES 5 B 173 LEU LEU ASP ILE LEU ASP THR ALA GLY GLN GLU GLU TYR SEQRES 6 B 173 SER ALA MET ARG ASP GLN TYR MET ARG THR GLY GLU GLY SEQRES 7 B 173 PHE LEU CYS VAL PHE ALA ILE ASN ASN SER LYS SER PHE SEQRES 8 B 173 ALA ASP ILE ASN LEU TYR ARG GLU GLN ILE LYS ARG VAL SEQRES 9 B 173 LYS ASP SER ASP ASP VAL PRO MET VAL LEU VAL GLY ASN SEQRES 10 B 173 LYS CYS ASP LEU PRO THR ARG THR VAL ASP THR LYS GLN SEQRES 11 B 173 ALA HIS GLU LEU ALA LYS SER TYR GLY ILE PRO PHE ILE SEQRES 12 B 173 GLU THR SER ALA LYS THR ARG GLN GLY VAL GLU ASP ALA SEQRES 13 B 173 PHE TYR THR LEU VAL ARG GLU ILE ARG GLN TYR ARG MET SEQRES 14 B 173 LYS LYS LEU ASN SEQRES 1 C 166 SER MET VAL ASN PRO THR VAL PHE PHE ASP ILE ALA VAL SEQRES 2 C 166 ASP GLY GLU PRO LEU GLY ARG VAL SER PHE GLU LEU PHE SEQRES 3 C 166 ALA ASP LYS VAL PRO LYS THR ALA GLU ASN PHE ARG ALA SEQRES 4 C 166 LEU SER THR GLY GLU LYS GLY PHE GLY TYR LYS GLY SER SEQRES 5 C 166 CYS PHE HIS ARG ILE ILE PRO GLY PHE MET CYS GLN GLY SEQRES 6 C 166 GLY ASP PHE THR ARG HIS ASN GLY THR GLY GLY LYS SER SEQRES 7 C 166 ILE TYR GLY GLU LYS PHE GLU ASP GLU ASN PHE ILE LEU SEQRES 8 C 166 LYS HIS THR GLY PRO GLY ILE LEU SER MET ALA ASN ALA SEQRES 9 C 166 GLY PRO ASN THR ASN GLY SER GLN PHE PHE ILE CYS THR SEQRES 10 C 166 ALA LYS THR GLU TRP LEU ASP GLY LYS HIS VAL VAL PHE SEQRES 11 C 166 GLY LYS VAL LYS GLU GLY MET ASN ILE VAL GLU ALA MET SEQRES 12 C 166 GLU ARG PHE GLY SER ARG ASN GLY LYS THR SER LYS LYS SEQRES 13 C 166 ILE THR ILE ALA ASP CYS GLY GLN LEU GLU SEQRES 1 D 166 SER MET VAL ASN PRO THR VAL PHE PHE ASP ILE ALA VAL SEQRES 2 D 166 ASP GLY GLU PRO LEU GLY ARG VAL SER PHE GLU LEU PHE SEQRES 3 D 166 ALA ASP LYS VAL PRO LYS THR ALA GLU ASN PHE ARG ALA SEQRES 4 D 166 LEU SER THR GLY GLU LYS GLY PHE GLY TYR LYS GLY SER SEQRES 5 D 166 CYS PHE HIS ARG ILE ILE PRO GLY PHE MET CYS GLN GLY SEQRES 6 D 166 GLY ASP PHE THR ARG HIS ASN GLY THR GLY GLY LYS SER SEQRES 7 D 166 ILE TYR GLY GLU LYS PHE GLU ASP GLU ASN PHE ILE LEU SEQRES 8 D 166 LYS HIS THR GLY PRO GLY ILE LEU SER MET ALA ASN ALA SEQRES 9 D 166 GLY PRO ASN THR ASN GLY SER GLN PHE PHE ILE CYS THR SEQRES 10 D 166 ALA LYS THR GLU TRP LEU ASP GLY LYS HIS VAL VAL PHE SEQRES 11 D 166 GLY LYS VAL LYS GLU GLY MET ASN ILE VAL GLU ALA MET SEQRES 12 D 166 GLU ARG PHE GLY SER ARG ASN GLY LYS THR SER LYS LYS SEQRES 13 D 166 ILE THR ILE ALA ASP CYS GLY GLN LEU GLU HET GNP A 201 32 HET MG A 202 1 HET GNP B 201 32 HET MG B 202 1 HET ZNI C 201 62 HET ZNI D 201 62 HETNAM GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER HETNAM MG MAGNESIUM ION HETNAM ZNI (1R,5S,6R)-N-[(1P,7S,9S,13S,20M)-20-{5-(4- HETNAM 2 ZNI CYCLOPROPYLPIPERAZIN-1-YL)-2-[(1S)-1- HETNAM 3 ZNI METHOXYETHYL]PYRIDIN-3-YL}-21-ETHYL-17,17-DIMETHYL-8, HETNAM 4 ZNI 14-DIOXO-15-OXA-4-THIA-9,21,27,28- HETNAM 5 ZNI TETRAAZAPENTACYCLO[17.5.2.1~2,5~.1~9,13~.0~22, HETNAM 6 ZNI 26~]OCTACOSA-1(24),2,5(28),19,22,25-HEXAEN-7-YL]-3- HETNAM 7 ZNI OXABICYCLO[3.1.0]HEXANE-6-CARBOXAMIDE HETSYN ZNI RMC-7977 FORMUL 5 GNP 2(C10 H17 N6 O13 P3) FORMUL 6 MG 2(MG 2+) FORMUL 9 ZNI 2(C47 H60 N8 O6 S) FORMUL 11 HOH *736(H2 O) HELIX 1 AA1 GLY A 15 ASN A 26 1 12 HELIX 2 AA2 GLN A 61 MET A 67 5 7 HELIX 3 AA3 ARG A 68 GLY A 75 1 8 HELIX 4 AA4 ASN A 86 ASP A 105 1 20 HELIX 5 AA5 ASP A 126 GLY A 138 1 13 HELIX 6 AA6 GLY A 151 ARG A 167 1 17 HELIX 7 AA7 GLY B 15 ASN B 26 1 12 HELIX 8 AA8 GLN B 61 MET B 67 5 7 HELIX 9 AA9 ARG B 68 GLY B 75 1 8 HELIX 10 AB1 ASN B 86 ASP B 105 1 20 HELIX 11 AB2 ASP B 126 GLY B 138 1 13 HELIX 12 AB3 GLY B 151 LYS B 169 1 19 HELIX 13 AB4 VAL C 29 GLY C 42 1 14 HELIX 14 AB5 THR C 119 ASP C 123 5 5 HELIX 15 AB6 GLY C 135 GLU C 143 1 9 HELIX 16 AB7 ARG C 144 GLY C 146 5 3 HELIX 17 AB8 VAL D 29 GLY D 42 1 14 HELIX 18 AB9 THR D 119 ASP D 123 5 5 HELIX 19 AC1 GLY D 135 GLU D 143 1 9 HELIX 20 AC2 ARG D 144 GLY D 146 5 3 SHEET 1 AA1 6 GLU A 37 ILE A 46 0 SHEET 2 AA1 6 GLU A 49 THR A 58 -1 O LEU A 53 N LYS A 42 SHEET 3 AA1 6 THR A 2 VAL A 9 1 N LEU A 6 O LEU A 56 SHEET 4 AA1 6 GLY A 77 ALA A 83 1 O LEU A 79 N VAL A 9 SHEET 5 AA1 6 MET A 111 ASN A 116 1 O ASN A 116 N PHE A 82 SHEET 6 AA1 6 PHE A 141 GLU A 143 1 O ILE A 142 N LEU A 113 SHEET 1 AA2 6 GLU B 37 ILE B 46 0 SHEET 2 AA2 6 GLU B 49 THR B 58 -1 O ASP B 57 N ASP B 38 SHEET 3 AA2 6 THR B 2 VAL B 9 1 N THR B 2 O LEU B 52 SHEET 4 AA2 6 GLY B 77 ALA B 83 1 O VAL B 81 N VAL B 9 SHEET 5 AA2 6 MET B 111 ASN B 116 1 O ASN B 116 N PHE B 82 SHEET 6 AA2 6 PHE B 141 GLU B 143 1 O ILE B 142 N LEU B 113 SHEET 1 AA3 8 PHE C 53 ILE C 57 0 SHEET 2 AA3 8 MET C 61 GLY C 64 -1 O GLN C 63 N ARG C 55 SHEET 3 AA3 8 PHE C 112 CYS C 115 -1 O ILE C 114 N CYS C 62 SHEET 4 AA3 8 ILE C 97 MET C 100 -1 N SER C 99 O PHE C 113 SHEET 5 AA3 8 VAL C 128 VAL C 132 -1 O GLY C 130 N LEU C 98 SHEET 6 AA3 8 GLU C 15 LEU C 24 -1 N GLU C 23 O LYS C 131 SHEET 7 AA3 8 THR C 5 VAL C 12 -1 N PHE C 8 O VAL C 20 SHEET 8 AA3 8 ILE C 156 LEU C 164 -1 O ASP C 160 N ASP C 9 SHEET 1 AA4 8 PHE D 53 ILE D 57 0 SHEET 2 AA4 8 MET D 61 GLY D 64 -1 O GLN D 63 N ARG D 55 SHEET 3 AA4 8 PHE D 112 CYS D 115 -1 O ILE D 114 N CYS D 62 SHEET 4 AA4 8 ILE D 97 MET D 100 -1 N ILE D 97 O CYS D 115 SHEET 5 AA4 8 VAL D 128 VAL D 132 -1 O GLY D 130 N LEU D 98 SHEET 6 AA4 8 GLU D 15 LEU D 24 -1 N GLU D 23 O LYS D 131 SHEET 7 AA4 8 THR D 5 VAL D 12 -1 N ILE D 10 O LEU D 17 SHEET 8 AA4 8 ILE D 156 GLN D 163 -1 O ASP D 160 N ASP D 9 LINK OG SER A 17 MG MG A 202 1555 1555 2.08 LINK OG1 THR A 35 MG MG A 202 1555 1555 2.03 LINK O1G GNP A 201 MG MG A 202 1555 1555 2.13 LINK O2B GNP A 201 MG MG A 202 1555 1555 2.02 LINK MG MG A 202 O HOH A 307 1555 1555 2.07 LINK MG MG A 202 O HOH A 335 1555 1555 2.10 LINK OG SER B 17 MG MG B 202 1555 1555 2.08 LINK OG1 THR B 35 MG MG B 202 1555 1555 2.10 LINK O1G GNP B 201 MG MG B 202 1555 1555 1.98 LINK O2B GNP B 201 MG MG B 202 1555 1555 2.03 LINK MG MG B 202 O HOH B 337 1555 1555 2.09 LINK MG MG B 202 O HOH B 356 1555 1555 2.08 CRYST1 65.490 84.270 126.040 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015270 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011867 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007934 0.00000