HEADER IMMUNE SYSTEM 29-JUN-23 8TBV TITLE HUMAN CLASS I MHC HLA-A2 IN COMPLEX WITH SORTING NEXIN 24 (127-135) TITLE 2 NEOANTIGEN KLSHQLVLL COMPND MOL_ID: 1; COMPND 2 MOLECULE: HLA-A*02:01 ALPHA CHAIN; COMPND 3 CHAIN: A, D; COMPND 4 SYNONYM: HLA CLASS I ANTIGEN, HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, COMPND 5 HLA CLASS I HISTOCOMPATIBILITY ANTIGEN A ALPHA CHAIN,A ALPHA CHAIN, COMPND 6 MHC CLASS I ANTIGEN,MHC CLASS I PROTEIN,MHC CLASS I PROTEIN (HLA-A); COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: BETA-2-MICROGLOBULIN; COMPND 10 CHAIN: B, E; COMPND 11 FRAGMENT: UNP RESIDUES 21-119; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: SORTING NEXIN 24 (127-135)(P132L) PEPTIDE; COMPND 15 CHAIN: C, F; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HLA-A, HLA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: B2M, CDABP0092, HDCMA22P; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 18 ORGANISM_TAXID: 9606 KEYWDS COMPLEX, MHC-I, ANTIGEN PRESENTATION, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR A.ARBUISO,L.I.WEISS,C.A.BRAMBLEY,J.MA,G.L.J.KELLER,C.M.AYRES, AUTHOR 2 B.M.BAKER REVDAT 3 06-NOV-24 8TBV 1 REMARK REVDAT 2 14-FEB-24 8TBV 1 JRNL REVDAT 1 17-JAN-24 8TBV 0 JRNL AUTH V.MIKHAYLOV,C.A.BRAMBLEY,G.L.J.KELLER,A.G.ARBUISO,L.I.WEISS, JRNL AUTH 2 B.M.BAKER,A.J.LEVINE JRNL TITL ACCURATE MODELING OF PEPTIDE-MHC STRUCTURES WITH ALPHAFOLD. JRNL REF STRUCTURE V. 32 228 2024 JRNL REFN ISSN 0969-2126 JRNL PMID 38113889 JRNL DOI 10.1016/J.STR.2023.11.011 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH V.MIKHAYLOV,C.A.BRAMBLEY,A.ARBUISO,L.WEISS,J.MA, REMARK 1 AUTH 2 G.L.J.KELLER,C.M.AYRES,B.M.BAKER,A.J.LEVINE REMARK 1 TITL ACCURATE MODELING OF PEPTIDE-MHC STRUCTURES WITH ALPHAFOLD. REMARK 1 REF BIORXIV 2023 REMARK 1 REFN ISSN 2692-8205 REMARK 1 DOI 10.1101/2023.03.06.531396 REMARK 1 REFERENCE 2 REMARK 1 AUTH P.V.AFONINE,R.W.GROSSE-KUNSTLEVE,N.ECHOLS,J.J.HEADD, REMARK 1 AUTH 2 N.W.MORIARTY,M.MUSTYAKIMOV,T.C.TERWILLIGER,A.URZHUMTSEV, REMARK 1 AUTH 3 P.H.ZWART,P.D.ADAMS REMARK 1 TITL TOWARDS AUTOMATED CRYSTALLOGRAPHIC STRUCTURE REFINEMENT WITH REMARK 1 TITL 2 PHENIX.REFINE. REMARK 1 REF ACTA CRYSTALLOGR D BIOL V. 68 352 2012 REMARK 1 REF 2 CRYSTALLOGR REMARK 1 REFN ESSN 1399-0047 REMARK 2 REMARK 2 RESOLUTION. 2.64 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.64 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 62.23 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.010 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.0 REMARK 3 NUMBER OF REFLECTIONS : 22920 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.234 REMARK 3 R VALUE (WORKING SET) : 0.229 REMARK 3 FREE R VALUE : 0.274 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2268 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 62.2300 - 6.6500 0.91 1317 144 0.2097 0.2258 REMARK 3 2 6.6500 - 5.2800 0.92 1308 142 0.2243 0.2688 REMARK 3 3 5.2800 - 4.6100 0.95 1335 148 0.1769 0.2264 REMARK 3 4 4.6100 - 4.1900 0.96 1348 148 0.1848 0.2219 REMARK 3 5 4.1900 - 3.8900 0.95 1330 147 0.2091 0.2448 REMARK 3 6 3.8900 - 3.6600 0.87 1221 134 0.2065 0.2526 REMARK 3 7 3.6600 - 3.4800 0.88 1221 136 0.2236 0.2543 REMARK 3 8 3.4800 - 3.3300 0.94 1321 150 0.2468 0.3017 REMARK 3 9 3.3300 - 3.2000 0.94 1319 147 0.2436 0.2897 REMARK 3 10 3.2000 - 3.0900 0.94 1307 139 0.2454 0.2952 REMARK 3 11 3.0900 - 2.9900 0.93 1291 141 0.2565 0.2972 REMARK 3 12 2.9900 - 2.9100 0.92 1305 141 0.2690 0.3186 REMARK 3 13 2.9100 - 2.8300 0.93 1278 135 0.2828 0.3251 REMARK 3 14 2.8300 - 2.7600 0.90 1279 146 0.2994 0.4143 REMARK 3 15 2.7600 - 2.7000 0.90 1242 132 0.3114 0.4159 REMARK 3 16 2.7000 - 2.6400 0.89 1230 138 0.2945 0.3436 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.375 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.048 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.18 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 6508 REMARK 3 ANGLE : 0.421 8819 REMARK 3 CHIRALITY : 0.039 900 REMARK 3 PLANARITY : 0.003 1148 REMARK 3 DIHEDRAL : 12.339 2383 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 180 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.8339 -3.4515 19.8338 REMARK 3 T TENSOR REMARK 3 T11: 0.1495 T22: 0.3456 REMARK 3 T33: 0.2259 T12: 0.0120 REMARK 3 T13: -0.1043 T23: 0.0578 REMARK 3 L TENSOR REMARK 3 L11: 2.2442 L22: 1.4222 REMARK 3 L33: 0.9781 L12: 0.1914 REMARK 3 L13: -0.2126 L23: 0.2252 REMARK 3 S TENSOR REMARK 3 S11: 0.0133 S12: 0.3145 S13: -0.0190 REMARK 3 S21: 0.0905 S22: -0.0333 S23: -0.2911 REMARK 3 S31: 0.0757 S32: 0.2472 S33: 0.0115 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 181 THROUGH 275 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.4829 -7.7876 3.9857 REMARK 3 T TENSOR REMARK 3 T11: 0.1515 T22: 0.4751 REMARK 3 T33: 0.3088 T12: -0.0148 REMARK 3 T13: -0.0845 T23: -0.0810 REMARK 3 L TENSOR REMARK 3 L11: 2.0946 L22: 1.1165 REMARK 3 L33: 2.3111 L12: 0.3452 REMARK 3 L13: 1.4802 L23: 0.5377 REMARK 3 S TENSOR REMARK 3 S11: 0.0105 S12: 0.2658 S13: 0.0605 REMARK 3 S21: -0.1031 S22: 0.0676 S23: 0.0966 REMARK 3 S31: 0.1334 S32: 0.0313 S33: -0.1077 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 100 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.6858 10.6848 11.5519 REMARK 3 T TENSOR REMARK 3 T11: 0.1816 T22: 0.4840 REMARK 3 T33: 0.2974 T12: 0.0308 REMARK 3 T13: -0.0941 T23: -0.0781 REMARK 3 L TENSOR REMARK 3 L11: 3.8046 L22: 0.7871 REMARK 3 L33: 0.7003 L12: -0.2360 REMARK 3 L13: -0.0092 L23: -0.4703 REMARK 3 S TENSOR REMARK 3 S11: -0.0299 S12: 0.1656 S13: 0.5934 REMARK 3 S21: -0.1048 S22: 0.0134 S23: 0.2032 REMARK 3 S31: -0.0179 S32: -0.1071 S33: 0.0427 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 9 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.0282 -4.5225 23.5223 REMARK 3 T TENSOR REMARK 3 T11: 0.2048 T22: 0.3053 REMARK 3 T33: 0.4667 T12: -0.0280 REMARK 3 T13: -0.0477 T23: 0.1091 REMARK 3 L TENSOR REMARK 3 L11: 6.8294 L22: 0.9394 REMARK 3 L33: 8.4876 L12: 2.3808 REMARK 3 L13: -5.5010 L23: -2.3754 REMARK 3 S TENSOR REMARK 3 S11: -0.0699 S12: -0.5078 S13: -0.1033 REMARK 3 S21: -0.0061 S22: -0.5132 S23: -0.6902 REMARK 3 S31: -0.1029 S32: 1.2482 S33: 0.5567 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 1 THROUGH 180) REMARK 3 ORIGIN FOR THE GROUP (A): 5.2324 -39.7947 34.7910 REMARK 3 T TENSOR REMARK 3 T11: 0.1624 T22: 0.5990 REMARK 3 T33: 0.2333 T12: -0.0280 REMARK 3 T13: -0.0530 T23: 0.0560 REMARK 3 L TENSOR REMARK 3 L11: 1.8089 L22: 1.0265 REMARK 3 L33: 0.9702 L12: 0.0706 REMARK 3 L13: 1.0875 L23: 0.1937 REMARK 3 S TENSOR REMARK 3 S11: -0.0315 S12: -0.0447 S13: 0.0742 REMARK 3 S21: -0.0855 S22: 0.0477 S23: 0.2432 REMARK 3 S31: 0.0113 S32: -0.0063 S33: 0.0069 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 181 THROUGH 275 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.7452 -35.2959 18.6934 REMARK 3 T TENSOR REMARK 3 T11: 0.1550 T22: 0.5966 REMARK 3 T33: 0.2589 T12: 0.0213 REMARK 3 T13: -0.0199 T23: -0.0294 REMARK 3 L TENSOR REMARK 3 L11: 1.8499 L22: 0.7149 REMARK 3 L33: 1.7081 L12: 0.5937 REMARK 3 L13: -1.2253 L23: 0.0443 REMARK 3 S TENSOR REMARK 3 S11: 0.1310 S12: 0.4950 S13: -0.0964 REMARK 3 S21: -0.1446 S22: 0.1709 S23: -0.1806 REMARK 3 S31: -0.0212 S32: 0.0991 S33: -0.2301 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 1 THROUGH 100 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.4162 -53.8097 26.1642 REMARK 3 T TENSOR REMARK 3 T11: 0.1931 T22: 0.5719 REMARK 3 T33: 0.2582 T12: -0.0095 REMARK 3 T13: -0.1028 T23: 0.0194 REMARK 3 L TENSOR REMARK 3 L11: 1.2689 L22: 0.4455 REMARK 3 L33: 0.4609 L12: -0.0960 REMARK 3 L13: 0.7469 L23: -0.0653 REMARK 3 S TENSOR REMARK 3 S11: 0.1192 S12: 0.1559 S13: -0.2176 REMARK 3 S21: -0.0399 S22: -0.0183 S23: -0.0128 REMARK 3 S31: 0.0723 S32: 0.0649 S33: -0.1192 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'F' AND (RESID 1 THROUGH 9 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.9302 -39.0049 38.3926 REMARK 3 T TENSOR REMARK 3 T11: 0.3762 T22: 0.4073 REMARK 3 T33: 0.5115 T12: 0.0327 REMARK 3 T13: -0.0006 T23: 0.0914 REMARK 3 L TENSOR REMARK 3 L11: 7.5052 L22: 6.0538 REMARK 3 L33: 7.7276 L12: 6.7380 REMARK 3 L13: 7.6135 L23: 6.8396 REMARK 3 S TENSOR REMARK 3 S11: -0.3053 S12: -0.7669 S13: 0.8783 REMARK 3 S21: -0.1727 S22: -0.4276 S23: 1.1045 REMARK 3 S31: -0.5649 S32: -1.0054 S33: 0.7229 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 3 REMARK 3 NCS GROUP : ens_1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "A" and resid 1 through 275) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : chain "D" REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS GROUP : ens_2 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "B" and resid 1 through 100) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : chain "E" REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS GROUP : ens_3 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : chain "C" REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : chain "F" REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8TBV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-JUN-23. REMARK 100 THE DEPOSITION ID IS D_1000275439. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-OCT-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS 2.2.10 REMARK 200 DATA SCALING SOFTWARE : DIALS 2.2.10 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23797 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.640 REMARK 200 RESOLUTION RANGE LOW (A) : 62.230 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.0 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.3200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.64 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX 1.20RC3_4406 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PURIFIED PROTEIN COMPLEXES WERE REMARK 280 CONCENTRATED TO 7.4 MG/ML BEFORE CRYSTALLIZATION. THE CRYSTALS REMARK 280 WERE GROWN IN 12.5% PEG 4000 AND 0.1 M MES (PH 6.5) VIA HANGING REMARK 280 DROP VAPOR DIFFUSION. CRYSTALS WERE HARVESTED AND CRYOPROTECTED REMARK 280 IN 8% GLYCEROL/92% MOTHER LIQUOR AND IMMEDIATELY STORED IN REMARK 280 LIQUID NITROGEN, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 43.36300 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5200 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4390 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18820 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NE2 GLN A 141 OXT GLU A 275 1655 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 29 -125.79 58.26 REMARK 500 LEU A 110 -54.28 -121.05 REMARK 500 HIS A 114 99.97 -168.65 REMARK 500 TYR A 123 -72.35 -111.13 REMARK 500 GLN A 224 48.03 -105.70 REMARK 500 TRP B 61 -2.36 70.70 REMARK 500 ASP D 29 -126.64 58.37 REMARK 500 LEU D 110 -55.69 -120.13 REMARK 500 HIS D 114 99.52 -169.41 REMARK 500 TYR D 123 -70.78 -111.55 REMARK 500 GLN D 224 49.50 -105.55 REMARK 500 TRP E 61 -1.80 71.20 REMARK 500 REMARK 500 REMARK: NULL DBREF 8TBV A 1 275 UNP Q53Z42 Q53Z42_HUMAN 25 299 DBREF 8TBV B 2 100 UNP P61769 B2MG_HUMAN 21 119 DBREF 8TBV C 1 9 PDB 8TBV 8TBV 1 9 DBREF 8TBV D 1 275 UNP Q53Z42 Q53Z42_HUMAN 25 299 DBREF 8TBV E 2 100 UNP P61769 B2MG_HUMAN 21 119 DBREF 8TBV F 1 9 PDB 8TBV 8TBV 1 9 SEQADV 8TBV MET B 1 UNP P61769 INITIATING METHIONINE SEQADV 8TBV MET E 1 UNP P61769 INITIATING METHIONINE SEQRES 1 A 275 GLY SER HIS SER MET ARG TYR PHE PHE THR SER VAL SER SEQRES 2 A 275 ARG PRO GLY ARG GLY GLU PRO ARG PHE ILE ALA VAL GLY SEQRES 3 A 275 TYR VAL ASP ASP THR GLN PHE VAL ARG PHE ASP SER ASP SEQRES 4 A 275 ALA ALA SER GLN ARG MET GLU PRO ARG ALA PRO TRP ILE SEQRES 5 A 275 GLU GLN GLU GLY PRO GLU TYR TRP ASP GLY GLU THR ARG SEQRES 6 A 275 LYS VAL LYS ALA HIS SER GLN THR HIS ARG VAL ASP LEU SEQRES 7 A 275 GLY THR LEU ARG GLY TYR TYR ASN GLN SER GLU ALA GLY SEQRES 8 A 275 SER HIS THR VAL GLN ARG MET TYR GLY CYS ASP VAL GLY SEQRES 9 A 275 SER ASP TRP ARG PHE LEU ARG GLY TYR HIS GLN TYR ALA SEQRES 10 A 275 TYR ASP GLY LYS ASP TYR ILE ALA LEU LYS GLU ASP LEU SEQRES 11 A 275 ARG SER TRP THR ALA ALA ASP MET ALA ALA GLN THR THR SEQRES 12 A 275 LYS HIS LYS TRP GLU ALA ALA HIS VAL ALA GLU GLN LEU SEQRES 13 A 275 ARG ALA TYR LEU GLU GLY THR CYS VAL GLU TRP LEU ARG SEQRES 14 A 275 ARG TYR LEU GLU ASN GLY LYS GLU THR LEU GLN ARG THR SEQRES 15 A 275 ASP ALA PRO LYS THR HIS MET THR HIS HIS ALA VAL SER SEQRES 16 A 275 ASP HIS GLU ALA THR LEU ARG CYS TRP ALA LEU SER PHE SEQRES 17 A 275 TYR PRO ALA GLU ILE THR LEU THR TRP GLN ARG ASP GLY SEQRES 18 A 275 GLU ASP GLN THR GLN ASP THR GLU LEU VAL GLU THR ARG SEQRES 19 A 275 PRO ALA GLY ASP GLY THR PHE GLN LYS TRP ALA ALA VAL SEQRES 20 A 275 VAL VAL PRO SER GLY GLN GLU GLN ARG TYR THR CYS HIS SEQRES 21 A 275 VAL GLN HIS GLU GLY LEU PRO LYS PRO LEU THR LEU ARG SEQRES 22 A 275 TRP GLU SEQRES 1 B 100 MET ILE GLN ARG THR PRO LYS ILE GLN VAL TYR SER ARG SEQRES 2 B 100 HIS PRO ALA GLU ASN GLY LYS SER ASN PHE LEU ASN CYS SEQRES 3 B 100 TYR VAL SER GLY PHE HIS PRO SER ASP ILE GLU VAL ASP SEQRES 4 B 100 LEU LEU LYS ASN GLY GLU ARG ILE GLU LYS VAL GLU HIS SEQRES 5 B 100 SER ASP LEU SER PHE SER LYS ASP TRP SER PHE TYR LEU SEQRES 6 B 100 LEU TYR TYR THR GLU PHE THR PRO THR GLU LYS ASP GLU SEQRES 7 B 100 TYR ALA CYS ARG VAL ASN HIS VAL THR LEU SER GLN PRO SEQRES 8 B 100 LYS ILE VAL LYS TRP ASP ARG ASP MET SEQRES 1 C 9 LYS LEU SER HIS GLN LEU VAL LEU LEU SEQRES 1 D 275 GLY SER HIS SER MET ARG TYR PHE PHE THR SER VAL SER SEQRES 2 D 275 ARG PRO GLY ARG GLY GLU PRO ARG PHE ILE ALA VAL GLY SEQRES 3 D 275 TYR VAL ASP ASP THR GLN PHE VAL ARG PHE ASP SER ASP SEQRES 4 D 275 ALA ALA SER GLN ARG MET GLU PRO ARG ALA PRO TRP ILE SEQRES 5 D 275 GLU GLN GLU GLY PRO GLU TYR TRP ASP GLY GLU THR ARG SEQRES 6 D 275 LYS VAL LYS ALA HIS SER GLN THR HIS ARG VAL ASP LEU SEQRES 7 D 275 GLY THR LEU ARG GLY TYR TYR ASN GLN SER GLU ALA GLY SEQRES 8 D 275 SER HIS THR VAL GLN ARG MET TYR GLY CYS ASP VAL GLY SEQRES 9 D 275 SER ASP TRP ARG PHE LEU ARG GLY TYR HIS GLN TYR ALA SEQRES 10 D 275 TYR ASP GLY LYS ASP TYR ILE ALA LEU LYS GLU ASP LEU SEQRES 11 D 275 ARG SER TRP THR ALA ALA ASP MET ALA ALA GLN THR THR SEQRES 12 D 275 LYS HIS LYS TRP GLU ALA ALA HIS VAL ALA GLU GLN LEU SEQRES 13 D 275 ARG ALA TYR LEU GLU GLY THR CYS VAL GLU TRP LEU ARG SEQRES 14 D 275 ARG TYR LEU GLU ASN GLY LYS GLU THR LEU GLN ARG THR SEQRES 15 D 275 ASP ALA PRO LYS THR HIS MET THR HIS HIS ALA VAL SER SEQRES 16 D 275 ASP HIS GLU ALA THR LEU ARG CYS TRP ALA LEU SER PHE SEQRES 17 D 275 TYR PRO ALA GLU ILE THR LEU THR TRP GLN ARG ASP GLY SEQRES 18 D 275 GLU ASP GLN THR GLN ASP THR GLU LEU VAL GLU THR ARG SEQRES 19 D 275 PRO ALA GLY ASP GLY THR PHE GLN LYS TRP ALA ALA VAL SEQRES 20 D 275 VAL VAL PRO SER GLY GLN GLU GLN ARG TYR THR CYS HIS SEQRES 21 D 275 VAL GLN HIS GLU GLY LEU PRO LYS PRO LEU THR LEU ARG SEQRES 22 D 275 TRP GLU SEQRES 1 E 100 MET ILE GLN ARG THR PRO LYS ILE GLN VAL TYR SER ARG SEQRES 2 E 100 HIS PRO ALA GLU ASN GLY LYS SER ASN PHE LEU ASN CYS SEQRES 3 E 100 TYR VAL SER GLY PHE HIS PRO SER ASP ILE GLU VAL ASP SEQRES 4 E 100 LEU LEU LYS ASN GLY GLU ARG ILE GLU LYS VAL GLU HIS SEQRES 5 E 100 SER ASP LEU SER PHE SER LYS ASP TRP SER PHE TYR LEU SEQRES 6 E 100 LEU TYR TYR THR GLU PHE THR PRO THR GLU LYS ASP GLU SEQRES 7 E 100 TYR ALA CYS ARG VAL ASN HIS VAL THR LEU SER GLN PRO SEQRES 8 E 100 LYS ILE VAL LYS TRP ASP ARG ASP MET SEQRES 1 F 9 LYS LEU SER HIS GLN LEU VAL LEU LEU HET PEG A 301 7 HET GOL A 302 6 HET GOL B 201 6 HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 7 PEG C4 H10 O3 FORMUL 8 GOL 2(C3 H8 O3) FORMUL 10 HOH *164(H2 O) HELIX 1 AA1 GLY A 56 ASN A 86 1 31 HELIX 2 AA2 ASP A 137 HIS A 151 1 15 HELIX 3 AA3 HIS A 151 GLY A 162 1 12 HELIX 4 AA4 GLY A 162 GLY A 175 1 14 HELIX 5 AA5 GLY A 175 GLN A 180 1 6 HELIX 6 AA6 GLN A 253 GLN A 255 5 3 HELIX 7 AA7 GLY D 56 TYR D 85 1 30 HELIX 8 AA8 MET D 138 HIS D 151 1 14 HELIX 9 AA9 HIS D 151 GLY D 162 1 12 HELIX 10 AB1 GLY D 162 GLY D 175 1 14 HELIX 11 AB2 GLY D 175 GLN D 180 1 6 HELIX 12 AB3 GLN D 253 GLN D 255 5 3 SHEET 1 AA1 8 GLU A 46 PRO A 47 0 SHEET 2 AA1 8 THR A 31 ASP A 37 -1 N ARG A 35 O GLU A 46 SHEET 3 AA1 8 ARG A 21 VAL A 28 -1 N VAL A 28 O THR A 31 SHEET 4 AA1 8 HIS A 3 VAL A 12 -1 N ARG A 6 O TYR A 27 SHEET 5 AA1 8 THR A 94 VAL A 103 -1 O VAL A 95 N SER A 11 SHEET 6 AA1 8 PHE A 109 TYR A 118 -1 O LEU A 110 N ASP A 102 SHEET 7 AA1 8 LYS A 121 LEU A 126 -1 O ILE A 124 N TYR A 116 SHEET 8 AA1 8 TRP A 133 ALA A 135 -1 O THR A 134 N ALA A 125 SHEET 1 AA2 4 LYS A 186 ALA A 193 0 SHEET 2 AA2 4 GLU A 198 PHE A 208 -1 O LEU A 206 N LYS A 186 SHEET 3 AA2 4 PHE A 241 PRO A 250 -1 O VAL A 249 N ALA A 199 SHEET 4 AA2 4 THR A 228 LEU A 230 -1 N GLU A 229 O ALA A 246 SHEET 1 AA3 4 LYS A 186 ALA A 193 0 SHEET 2 AA3 4 GLU A 198 PHE A 208 -1 O LEU A 206 N LYS A 186 SHEET 3 AA3 4 PHE A 241 PRO A 250 -1 O VAL A 249 N ALA A 199 SHEET 4 AA3 4 ARG A 234 PRO A 235 -1 N ARG A 234 O GLN A 242 SHEET 1 AA4 4 GLU A 222 ASP A 223 0 SHEET 2 AA4 4 THR A 214 ARG A 219 -1 N ARG A 219 O GLU A 222 SHEET 3 AA4 4 TYR A 257 GLN A 262 -1 O THR A 258 N GLN A 218 SHEET 4 AA4 4 LEU A 270 ARG A 273 -1 O LEU A 272 N CYS A 259 SHEET 1 AA5 4 LYS B 7 SER B 12 0 SHEET 2 AA5 4 ASN B 22 PHE B 31 -1 O ASN B 25 N TYR B 11 SHEET 3 AA5 4 PHE B 63 PHE B 71 -1 O LEU B 65 N VAL B 28 SHEET 4 AA5 4 GLU B 51 HIS B 52 -1 N GLU B 51 O TYR B 68 SHEET 1 AA6 4 LYS B 7 SER B 12 0 SHEET 2 AA6 4 ASN B 22 PHE B 31 -1 O ASN B 25 N TYR B 11 SHEET 3 AA6 4 PHE B 63 PHE B 71 -1 O LEU B 65 N VAL B 28 SHEET 4 AA6 4 SER B 56 PHE B 57 -1 N SER B 56 O TYR B 64 SHEET 1 AA7 4 GLU B 45 ARG B 46 0 SHEET 2 AA7 4 GLU B 37 LYS B 42 -1 N LYS B 42 O GLU B 45 SHEET 3 AA7 4 TYR B 79 ASN B 84 -1 O ALA B 80 N LEU B 41 SHEET 4 AA7 4 LYS B 92 LYS B 95 -1 O LYS B 92 N VAL B 83 SHEET 1 AA8 8 GLU D 46 PRO D 47 0 SHEET 2 AA8 8 THR D 31 ASP D 37 -1 N ARG D 35 O GLU D 46 SHEET 3 AA8 8 ARG D 21 VAL D 28 -1 N VAL D 28 O THR D 31 SHEET 4 AA8 8 HIS D 3 VAL D 12 -1 N ARG D 6 O TYR D 27 SHEET 5 AA8 8 THR D 94 VAL D 103 -1 O VAL D 95 N SER D 11 SHEET 6 AA8 8 PHE D 109 TYR D 118 -1 O ALA D 117 N GLN D 96 SHEET 7 AA8 8 LYS D 121 LEU D 126 -1 O ILE D 124 N TYR D 116 SHEET 8 AA8 8 TRP D 133 ALA D 135 -1 O THR D 134 N ALA D 125 SHEET 1 AA9 4 LYS D 186 ALA D 193 0 SHEET 2 AA9 4 GLU D 198 PHE D 208 -1 O TRP D 204 N HIS D 188 SHEET 3 AA9 4 PHE D 241 PRO D 250 -1 O ALA D 245 N CYS D 203 SHEET 4 AA9 4 THR D 228 LEU D 230 -1 N GLU D 229 O ALA D 246 SHEET 1 AB1 4 LYS D 186 ALA D 193 0 SHEET 2 AB1 4 GLU D 198 PHE D 208 -1 O TRP D 204 N HIS D 188 SHEET 3 AB1 4 PHE D 241 PRO D 250 -1 O ALA D 245 N CYS D 203 SHEET 4 AB1 4 ARG D 234 PRO D 235 -1 N ARG D 234 O GLN D 242 SHEET 1 AB2 4 GLU D 222 ASP D 223 0 SHEET 2 AB2 4 THR D 214 ARG D 219 -1 N ARG D 219 O GLU D 222 SHEET 3 AB2 4 TYR D 257 GLN D 262 -1 O THR D 258 N GLN D 218 SHEET 4 AB2 4 LEU D 270 LEU D 272 -1 O LEU D 272 N CYS D 259 SHEET 1 AB3 4 LYS E 7 SER E 12 0 SHEET 2 AB3 4 ASN E 22 PHE E 31 -1 O ASN E 25 N TYR E 11 SHEET 3 AB3 4 PHE E 63 PHE E 71 -1 O LEU E 65 N VAL E 28 SHEET 4 AB3 4 GLU E 51 HIS E 52 -1 N GLU E 51 O TYR E 68 SHEET 1 AB4 4 LYS E 7 SER E 12 0 SHEET 2 AB4 4 ASN E 22 PHE E 31 -1 O ASN E 25 N TYR E 11 SHEET 3 AB4 4 PHE E 63 PHE E 71 -1 O LEU E 65 N VAL E 28 SHEET 4 AB4 4 SER E 56 PHE E 57 -1 N SER E 56 O TYR E 64 SHEET 1 AB5 4 GLU E 45 ARG E 46 0 SHEET 2 AB5 4 GLU E 37 LYS E 42 -1 N LYS E 42 O GLU E 45 SHEET 3 AB5 4 TYR E 79 ASN E 84 -1 O ALA E 80 N LEU E 41 SHEET 4 AB5 4 LYS E 92 LYS E 95 -1 O LYS E 92 N VAL E 83 SSBOND 1 CYS A 101 CYS A 164 1555 1555 2.03 SSBOND 2 CYS A 203 CYS A 259 1555 1555 2.03 SSBOND 3 CYS B 26 CYS B 81 1555 1555 2.03 SSBOND 4 CYS D 101 CYS D 164 1555 1555 2.03 SSBOND 5 CYS D 203 CYS D 259 1555 1555 2.03 SSBOND 6 CYS E 26 CYS E 81 1555 1555 2.03 CISPEP 1 TYR A 209 PRO A 210 0 1.63 CISPEP 2 HIS B 32 PRO B 33 0 2.26 CISPEP 3 TYR D 209 PRO D 210 0 1.87 CISPEP 4 HIS E 32 PRO E 33 0 1.80 CRYST1 62.226 86.726 79.268 90.00 90.07 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016070 0.000000 0.000020 0.00000 SCALE2 0.000000 0.011531 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012615 0.00000