HEADER IMMUNE SYSTEM 29-JUN-23 8TBW TITLE HUMAN CLASS I MHC HLA-A2 IN COMPLEX WITH SORTING NEXIN 24 (127-135) TITLE 2 PEPTIDE KLSHQPVLL COMPND MOL_ID: 1; COMPND 2 MOLECULE: HLA-A*02:01 ALPHA CHAIN; COMPND 3 CHAIN: A, D; COMPND 4 SYNONYM: HLA CLASS I ANTIGEN, HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, COMPND 5 HLA CLASS I HISTOCOMPATIBILITY ANTIGEN A ALPHA CHAIN,A ALPHA CHAIN, COMPND 6 MHC CLASS I ANTIGEN,MHC CLASS I PROTEIN,MHC CLASS I PROTEIN (HLA-A); COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: BETA-2-MICROGLOBULIN; COMPND 10 CHAIN: B, E; COMPND 11 FRAGMENT: UNP RESIDUES 21-119; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: SORTING NEXIN 24 (127-135) PEPTIDE; COMPND 15 CHAIN: C, F; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HLA-A, HLA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: B2M, CDABP0092, HDCMA22P; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 18 ORGANISM_TAXID: 9606 KEYWDS COMPLEX, MHC-I, ANTIGEN PRESENTATION, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR A.ARBUISO,L.I.WEISS,C.A.BRAMBLEY,J.MA,G.L.J.KELLER,C.M.AYRES, AUTHOR 2 B.M.BAKER REVDAT 2 14-FEB-24 8TBW 1 JRNL REVDAT 1 10-JAN-24 8TBW 0 JRNL AUTH V.MIKHAYLOV,C.A.BRAMBLEY,G.L.J.KELLER,A.G.ARBUISO,L.I.WEISS, JRNL AUTH 2 B.M.BAKER,A.J.LEVINE JRNL TITL ACCURATE MODELING OF PEPTIDE-MHC STRUCTURES WITH ALPHAFOLD. JRNL REF STRUCTURE V. 32 228 2024 JRNL REFN ISSN 0969-2126 JRNL PMID 38113889 JRNL DOI 10.1016/J.STR.2023.11.011 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH P.V.AFONINE,R.W.GROSSE-KUNSTLEVE,N.ECHOLS,J.J.HEADD, REMARK 1 AUTH 2 N.W.MORIARTY,M.MUSTYAKIMOV,T.C.TERWILLIGER,A.URZHUMTSEV, REMARK 1 AUTH 3 P.H.ZWART,P.D.ADAMS REMARK 1 TITL TOWARDS AUTOMATED CRYSTALLOGRAPHIC STRUCTURE REFINEMENT WITH REMARK 1 TITL 2 PHENIX.REFINE. REMARK 1 REF ACTA CRYSTALLOGR D BIOL V. 68 352 2012 REMARK 1 REF 2 CRYSTALLOGR REMARK 1 REFN ESSN 1399-0047 REMARK 2 REMARK 2 RESOLUTION. 2.08 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.08 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.71 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.080 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.6 REMARK 3 NUMBER OF REFLECTIONS : 55934 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.010 REMARK 3 FREE R VALUE TEST SET COUNT : 5599 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.7100 - 6.4600 1.00 1897 212 0.1666 0.1858 REMARK 3 2 6.4600 - 5.1300 1.00 1802 200 0.1621 0.1864 REMARK 3 3 5.1300 - 4.4800 1.00 1790 199 0.1286 0.1639 REMARK 3 4 4.4800 - 4.0700 1.00 1778 198 0.1336 0.1711 REMARK 3 5 4.0700 - 3.7800 1.00 1786 198 0.1439 0.1755 REMARK 3 6 3.7800 - 3.5600 1.00 1758 196 0.1516 0.1849 REMARK 3 7 3.5600 - 3.3800 0.99 1763 194 0.1763 0.2019 REMARK 3 8 3.3800 - 3.2300 0.99 1748 192 0.1791 0.1940 REMARK 3 9 3.2300 - 3.1100 0.99 1743 193 0.1791 0.1997 REMARK 3 10 3.1100 - 3.0000 0.99 1721 194 0.1718 0.2097 REMARK 3 11 3.0000 - 2.9100 0.99 1739 191 0.1899 0.2127 REMARK 3 12 2.9100 - 2.8200 0.99 1737 194 0.1927 0.2464 REMARK 3 13 2.8200 - 2.7500 0.98 1697 189 0.2037 0.2344 REMARK 3 14 2.7500 - 2.6800 0.98 1729 196 0.2050 0.2229 REMARK 3 15 2.6800 - 2.6200 0.98 1713 188 0.2042 0.2590 REMARK 3 16 2.6200 - 2.5700 0.98 1707 195 0.1895 0.2269 REMARK 3 17 2.5700 - 2.5200 0.97 1701 191 0.1865 0.2183 REMARK 3 18 2.5200 - 2.4700 0.98 1704 188 0.1878 0.2405 REMARK 3 19 2.4700 - 2.4200 0.96 1679 185 0.1970 0.2395 REMARK 3 20 2.4200 - 2.3800 0.96 1653 187 0.1986 0.2529 REMARK 3 21 2.3800 - 2.3400 0.95 1663 186 0.1984 0.2374 REMARK 3 22 2.3400 - 2.3100 0.95 1650 184 0.1954 0.2619 REMARK 3 23 2.3100 - 2.2700 0.96 1652 186 0.2023 0.2321 REMARK 3 24 2.2700 - 2.2400 0.94 1635 183 0.1925 0.2040 REMARK 3 25 2.2400 - 2.2100 0.92 1595 175 0.1881 0.2342 REMARK 3 26 2.2100 - 2.1800 0.89 1532 168 0.2013 0.2487 REMARK 3 27 2.1800 - 2.1600 0.87 1521 171 0.1952 0.2593 REMARK 3 28 2.1600 - 2.1300 0.86 1464 163 0.1992 0.2416 REMARK 3 29 2.1300 - 2.1100 0.84 1471 164 0.1982 0.2763 REMARK 3 30 2.1000 - 2.0810 0.76 1307 139 0.2049 0.2389 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.212 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.300 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.65 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.19 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 6498 REMARK 3 ANGLE : 0.834 8812 REMARK 3 CHIRALITY : 0.053 898 REMARK 3 PLANARITY : 0.008 1152 REMARK 3 DIHEDRAL : 13.631 2378 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 180 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.7201 -8.2681 30.3476 REMARK 3 T TENSOR REMARK 3 T11: 0.1733 T22: 0.1828 REMARK 3 T33: 0.2306 T12: -0.0557 REMARK 3 T13: 0.0085 T23: -0.0311 REMARK 3 L TENSOR REMARK 3 L11: 1.9743 L22: 2.1464 REMARK 3 L33: 3.0236 L12: 0.1366 REMARK 3 L13: -1.3219 L23: -0.1637 REMARK 3 S TENSOR REMARK 3 S11: 0.0804 S12: -0.0788 S13: 0.1218 REMARK 3 S21: -0.0761 S22: -0.0040 S23: -0.1488 REMARK 3 S31: -0.2268 S32: 0.1125 S33: -0.0503 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 181 THROUGH 275 ) REMARK 3 ORIGIN FOR THE GROUP (A): -30.0666 -36.9341 34.9878 REMARK 3 T TENSOR REMARK 3 T11: 0.2122 T22: 0.2285 REMARK 3 T33: 0.2093 T12: -0.0438 REMARK 3 T13: 0.0313 T23: -0.0220 REMARK 3 L TENSOR REMARK 3 L11: 1.7255 L22: 7.2419 REMARK 3 L33: 3.1569 L12: 0.8761 REMARK 3 L13: 0.2001 L23: 0.7428 REMARK 3 S TENSOR REMARK 3 S11: 0.1222 S12: -0.0272 S13: -0.1448 REMARK 3 S21: -0.1064 S22: -0.1768 S23: 0.1263 REMARK 3 S31: 0.4855 S32: -0.0955 S33: 0.0887 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 100 ) REMARK 3 ORIGIN FOR THE GROUP (A): -33.6436 -18.2289 22.7002 REMARK 3 T TENSOR REMARK 3 T11: 0.2472 T22: 0.1821 REMARK 3 T33: 0.2329 T12: 0.0177 REMARK 3 T13: -0.0559 T23: -0.0267 REMARK 3 L TENSOR REMARK 3 L11: 6.0042 L22: 2.0446 REMARK 3 L33: 2.9863 L12: 0.8473 REMARK 3 L13: -0.5945 L23: 0.3364 REMARK 3 S TENSOR REMARK 3 S11: -0.0781 S12: 0.1106 S13: 0.0694 REMARK 3 S21: -0.2667 S22: -0.0362 S23: 0.3335 REMARK 3 S31: -0.1514 S32: -0.3830 S33: 0.1768 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 9 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.6451 -2.9382 31.0564 REMARK 3 T TENSOR REMARK 3 T11: 0.4385 T22: 0.2868 REMARK 3 T33: 0.3546 T12: -0.0687 REMARK 3 T13: 0.0161 T23: -0.0360 REMARK 3 L TENSOR REMARK 3 L11: 8.0507 L22: 3.3922 REMARK 3 L33: 7.6043 L12: -1.3571 REMARK 3 L13: -7.7821 L23: 1.5929 REMARK 3 S TENSOR REMARK 3 S11: 0.1514 S12: -0.7231 S13: 0.4456 REMARK 3 S21: -0.1190 S22: 0.1230 S23: -0.3595 REMARK 3 S31: -0.0572 S32: 1.0587 S33: -0.2809 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 1 THROUGH 180 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.6600 -69.2855 22.0111 REMARK 3 T TENSOR REMARK 3 T11: 0.2719 T22: 0.1500 REMARK 3 T33: 0.2607 T12: -0.0420 REMARK 3 T13: -0.0318 T23: 0.0432 REMARK 3 L TENSOR REMARK 3 L11: 3.7963 L22: 2.0261 REMARK 3 L33: 2.1232 L12: 0.0546 REMARK 3 L13: -1.3969 L23: 0.1515 REMARK 3 S TENSOR REMARK 3 S11: 0.0564 S12: -0.1887 S13: -0.2537 REMARK 3 S21: 0.1106 S22: -0.1135 S23: -0.1579 REMARK 3 S31: 0.1444 S32: 0.1567 S33: 0.0584 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 181 THROUGH 275 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.0158 -39.5051 13.9979 REMARK 3 T TENSOR REMARK 3 T11: 0.1548 T22: 0.2135 REMARK 3 T33: 0.1864 T12: -0.0154 REMARK 3 T13: -0.0032 T23: -0.0120 REMARK 3 L TENSOR REMARK 3 L11: 1.9449 L22: 7.8316 REMARK 3 L33: 3.1789 L12: 2.1253 REMARK 3 L13: 0.1687 L23: 0.7042 REMARK 3 S TENSOR REMARK 3 S11: 0.1334 S12: -0.0977 S13: 0.0874 REMARK 3 S21: 0.2379 S22: -0.1085 S23: -0.0106 REMARK 3 S31: -0.1317 S32: 0.0272 S33: -0.0417 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 1 THROUGH 100 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.2741 -51.2303 2.1017 REMARK 3 T TENSOR REMARK 3 T11: 0.2383 T22: 0.1883 REMARK 3 T33: 0.1853 T12: -0.0208 REMARK 3 T13: -0.0354 T23: -0.0286 REMARK 3 L TENSOR REMARK 3 L11: 3.2326 L22: 2.5075 REMARK 3 L33: 4.7795 L12: 0.9042 REMARK 3 L13: -1.9356 L23: -1.1676 REMARK 3 S TENSOR REMARK 3 S11: 0.0640 S12: 0.3593 S13: -0.0531 REMARK 3 S21: -0.1362 S22: 0.0276 S23: 0.0043 REMARK 3 S31: -0.2478 S32: -0.0666 S33: -0.1166 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'F' AND (RESID 1 THROUGH 9 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.5754 -75.9044 25.7339 REMARK 3 T TENSOR REMARK 3 T11: 0.4200 T22: 0.2884 REMARK 3 T33: 0.4123 T12: -0.0984 REMARK 3 T13: -0.0919 T23: 0.0641 REMARK 3 L TENSOR REMARK 3 L11: 7.9855 L22: 5.5988 REMARK 3 L33: 6.1245 L12: -5.7852 REMARK 3 L13: -5.1216 L23: 3.9828 REMARK 3 S TENSOR REMARK 3 S11: 0.1479 S12: -1.4305 S13: -0.4478 REMARK 3 S21: 0.1520 S22: -0.1758 S23: 0.1025 REMARK 3 S31: 0.1307 S32: 0.0606 S33: 0.2672 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8TBW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-JUN-23. REMARK 100 THE DEPOSITION ID IS D_1000275624. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JUL-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : DIALS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 58502 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.081 REMARK 200 RESOLUTION RANGE LOW (A) : 48.710 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.6 REMARK 200 DATA REDUNDANCY : 13.70 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.5700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.08 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.16 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PURIFIED PROTEIN COMPLEXES WERE REMARK 280 CONCENTRATED TO 7.4 MG/ML BEFORE CRYSTALLIZATION. THE CRYSTALS REMARK 280 WERE GROWN IN 12.5% PEG 4000 AND 0.1 M MES (PH 6.5) VIA HANGING REMARK 280 DROP VAPOR DIFFUSION. CRYSTALS WERE HARVESTED AND CRYOPROTECTED REMARK 280 IN 8% GLYCEROL/92% MOTHER LIQUOR AND IMMEDIATELY STORED IN REMARK 280 LIQUID NITROGEN, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 92.95600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 92.95600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 33.02600 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 78.78500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 33.02600 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 78.78500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 92.95600 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 33.02600 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 78.78500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 92.95600 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 33.02600 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 78.78500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4490 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19280 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4550 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 583 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH D 460 O HOH D 516 2.06 REMARK 500 O HOH E 233 O HOH E 286 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 29 -122.69 50.48 REMARK 500 HIS A 114 103.52 -160.99 REMARK 500 SER A 195 -149.74 -145.08 REMARK 500 TRP B 61 -2.67 78.97 REMARK 500 ASP D 29 -121.55 50.67 REMARK 500 HIS D 114 104.39 -160.16 REMARK 500 SER D 195 -142.59 46.37 REMARK 500 TRP E 61 -2.77 76.80 REMARK 500 REMARK 500 REMARK: NULL DBREF 8TBW A 1 275 UNP Q53Z42 Q53Z42_HUMAN 25 299 DBREF 8TBW B 2 100 UNP P61769 B2MG_HUMAN 21 119 DBREF 8TBW C 1 9 PDB 8TBW 8TBW 1 9 DBREF 8TBW D 1 275 UNP Q53Z42 Q53Z42_HUMAN 25 299 DBREF 8TBW E 2 100 UNP P61769 B2MG_HUMAN 21 119 DBREF 8TBW F 1 9 PDB 8TBW 8TBW 1 9 SEQADV 8TBW MET B 1 UNP P61769 INITIATING METHIONINE SEQADV 8TBW MET E 1 UNP P61769 INITIATING METHIONINE SEQRES 1 A 275 GLY SER HIS SER MET ARG TYR PHE PHE THR SER VAL SER SEQRES 2 A 275 ARG PRO GLY ARG GLY GLU PRO ARG PHE ILE ALA VAL GLY SEQRES 3 A 275 TYR VAL ASP ASP THR GLN PHE VAL ARG PHE ASP SER ASP SEQRES 4 A 275 ALA ALA SER GLN ARG MET GLU PRO ARG ALA PRO TRP ILE SEQRES 5 A 275 GLU GLN GLU GLY PRO GLU TYR TRP ASP GLY GLU THR ARG SEQRES 6 A 275 LYS VAL LYS ALA HIS SER GLN THR HIS ARG VAL ASP LEU SEQRES 7 A 275 GLY THR LEU ARG GLY TYR TYR ASN GLN SER GLU ALA GLY SEQRES 8 A 275 SER HIS THR VAL GLN ARG MET TYR GLY CYS ASP VAL GLY SEQRES 9 A 275 SER ASP TRP ARG PHE LEU ARG GLY TYR HIS GLN TYR ALA SEQRES 10 A 275 TYR ASP GLY LYS ASP TYR ILE ALA LEU LYS GLU ASP LEU SEQRES 11 A 275 ARG SER TRP THR ALA ALA ASP MET ALA ALA GLN THR THR SEQRES 12 A 275 LYS HIS LYS TRP GLU ALA ALA HIS VAL ALA GLU GLN LEU SEQRES 13 A 275 ARG ALA TYR LEU GLU GLY THR CYS VAL GLU TRP LEU ARG SEQRES 14 A 275 ARG TYR LEU GLU ASN GLY LYS GLU THR LEU GLN ARG THR SEQRES 15 A 275 ASP ALA PRO LYS THR HIS MET THR HIS HIS ALA VAL SER SEQRES 16 A 275 ASP HIS GLU ALA THR LEU ARG CYS TRP ALA LEU SER PHE SEQRES 17 A 275 TYR PRO ALA GLU ILE THR LEU THR TRP GLN ARG ASP GLY SEQRES 18 A 275 GLU ASP GLN THR GLN ASP THR GLU LEU VAL GLU THR ARG SEQRES 19 A 275 PRO ALA GLY ASP GLY THR PHE GLN LYS TRP ALA ALA VAL SEQRES 20 A 275 VAL VAL PRO SER GLY GLN GLU GLN ARG TYR THR CYS HIS SEQRES 21 A 275 VAL GLN HIS GLU GLY LEU PRO LYS PRO LEU THR LEU ARG SEQRES 22 A 275 TRP GLU SEQRES 1 B 100 MET ILE GLN ARG THR PRO LYS ILE GLN VAL TYR SER ARG SEQRES 2 B 100 HIS PRO ALA GLU ASN GLY LYS SER ASN PHE LEU ASN CYS SEQRES 3 B 100 TYR VAL SER GLY PHE HIS PRO SER ASP ILE GLU VAL ASP SEQRES 4 B 100 LEU LEU LYS ASN GLY GLU ARG ILE GLU LYS VAL GLU HIS SEQRES 5 B 100 SER ASP LEU SER PHE SER LYS ASP TRP SER PHE TYR LEU SEQRES 6 B 100 LEU TYR TYR THR GLU PHE THR PRO THR GLU LYS ASP GLU SEQRES 7 B 100 TYR ALA CYS ARG VAL ASN HIS VAL THR LEU SER GLN PRO SEQRES 8 B 100 LYS ILE VAL LYS TRP ASP ARG ASP MET SEQRES 1 C 9 LYS LEU SER HIS GLN PRO VAL LEU LEU SEQRES 1 D 275 GLY SER HIS SER MET ARG TYR PHE PHE THR SER VAL SER SEQRES 2 D 275 ARG PRO GLY ARG GLY GLU PRO ARG PHE ILE ALA VAL GLY SEQRES 3 D 275 TYR VAL ASP ASP THR GLN PHE VAL ARG PHE ASP SER ASP SEQRES 4 D 275 ALA ALA SER GLN ARG MET GLU PRO ARG ALA PRO TRP ILE SEQRES 5 D 275 GLU GLN GLU GLY PRO GLU TYR TRP ASP GLY GLU THR ARG SEQRES 6 D 275 LYS VAL LYS ALA HIS SER GLN THR HIS ARG VAL ASP LEU SEQRES 7 D 275 GLY THR LEU ARG GLY TYR TYR ASN GLN SER GLU ALA GLY SEQRES 8 D 275 SER HIS THR VAL GLN ARG MET TYR GLY CYS ASP VAL GLY SEQRES 9 D 275 SER ASP TRP ARG PHE LEU ARG GLY TYR HIS GLN TYR ALA SEQRES 10 D 275 TYR ASP GLY LYS ASP TYR ILE ALA LEU LYS GLU ASP LEU SEQRES 11 D 275 ARG SER TRP THR ALA ALA ASP MET ALA ALA GLN THR THR SEQRES 12 D 275 LYS HIS LYS TRP GLU ALA ALA HIS VAL ALA GLU GLN LEU SEQRES 13 D 275 ARG ALA TYR LEU GLU GLY THR CYS VAL GLU TRP LEU ARG SEQRES 14 D 275 ARG TYR LEU GLU ASN GLY LYS GLU THR LEU GLN ARG THR SEQRES 15 D 275 ASP ALA PRO LYS THR HIS MET THR HIS HIS ALA VAL SER SEQRES 16 D 275 ASP HIS GLU ALA THR LEU ARG CYS TRP ALA LEU SER PHE SEQRES 17 D 275 TYR PRO ALA GLU ILE THR LEU THR TRP GLN ARG ASP GLY SEQRES 18 D 275 GLU ASP GLN THR GLN ASP THR GLU LEU VAL GLU THR ARG SEQRES 19 D 275 PRO ALA GLY ASP GLY THR PHE GLN LYS TRP ALA ALA VAL SEQRES 20 D 275 VAL VAL PRO SER GLY GLN GLU GLN ARG TYR THR CYS HIS SEQRES 21 D 275 VAL GLN HIS GLU GLY LEU PRO LYS PRO LEU THR LEU ARG SEQRES 22 D 275 TRP GLU SEQRES 1 E 100 MET ILE GLN ARG THR PRO LYS ILE GLN VAL TYR SER ARG SEQRES 2 E 100 HIS PRO ALA GLU ASN GLY LYS SER ASN PHE LEU ASN CYS SEQRES 3 E 100 TYR VAL SER GLY PHE HIS PRO SER ASP ILE GLU VAL ASP SEQRES 4 E 100 LEU LEU LYS ASN GLY GLU ARG ILE GLU LYS VAL GLU HIS SEQRES 5 E 100 SER ASP LEU SER PHE SER LYS ASP TRP SER PHE TYR LEU SEQRES 6 E 100 LEU TYR TYR THR GLU PHE THR PRO THR GLU LYS ASP GLU SEQRES 7 E 100 TYR ALA CYS ARG VAL ASN HIS VAL THR LEU SER GLN PRO SEQRES 8 E 100 LYS ILE VAL LYS TRP ASP ARG ASP MET SEQRES 1 F 9 LYS LEU SER HIS GLN PRO VAL LEU LEU HET NO3 A 301 4 HET NO3 D 301 4 HETNAM NO3 NITRATE ION FORMUL 7 NO3 2(N O3 1-) FORMUL 9 HOH *539(H2 O) HELIX 1 AA1 ALA A 49 GLU A 55 5 7 HELIX 2 AA2 GLY A 56 TYR A 85 1 30 HELIX 3 AA3 ASP A 137 ALA A 150 1 14 HELIX 4 AA4 HIS A 151 GLY A 162 1 12 HELIX 5 AA5 GLY A 162 GLY A 175 1 14 HELIX 6 AA6 GLY A 175 GLN A 180 1 6 HELIX 7 AA7 GLN A 253 GLN A 255 5 3 HELIX 8 AA8 GLY D 56 TYR D 85 1 30 HELIX 9 AA9 ASP D 137 ALA D 150 1 14 HELIX 10 AB1 HIS D 151 GLY D 162 1 12 HELIX 11 AB2 GLY D 162 GLY D 175 1 14 HELIX 12 AB3 GLY D 175 GLN D 180 1 6 HELIX 13 AB4 GLN D 253 GLN D 255 5 3 SHEET 1 AA1 8 GLU A 46 PRO A 47 0 SHEET 2 AA1 8 THR A 31 ASP A 37 -1 N ARG A 35 O GLU A 46 SHEET 3 AA1 8 ARG A 21 VAL A 28 -1 N GLY A 26 O PHE A 33 SHEET 4 AA1 8 HIS A 3 VAL A 12 -1 N ARG A 6 O TYR A 27 SHEET 5 AA1 8 THR A 94 VAL A 103 -1 O VAL A 103 N HIS A 3 SHEET 6 AA1 8 PHE A 109 TYR A 118 -1 O LEU A 110 N ASP A 102 SHEET 7 AA1 8 LYS A 121 LEU A 126 -1 O ILE A 124 N TYR A 116 SHEET 8 AA1 8 TRP A 133 ALA A 135 -1 O THR A 134 N ALA A 125 SHEET 1 AA2 4 LYS A 186 ALA A 193 0 SHEET 2 AA2 4 GLU A 198 PHE A 208 -1 O TRP A 204 N HIS A 188 SHEET 3 AA2 4 PHE A 241 PRO A 250 -1 O ALA A 245 N CYS A 203 SHEET 4 AA2 4 THR A 228 LEU A 230 -1 N GLU A 229 O ALA A 246 SHEET 1 AA3 4 LYS A 186 ALA A 193 0 SHEET 2 AA3 4 GLU A 198 PHE A 208 -1 O TRP A 204 N HIS A 188 SHEET 3 AA3 4 PHE A 241 PRO A 250 -1 O ALA A 245 N CYS A 203 SHEET 4 AA3 4 ARG A 234 PRO A 235 -1 N ARG A 234 O GLN A 242 SHEET 1 AA4 4 GLU A 222 GLN A 224 0 SHEET 2 AA4 4 THR A 214 ARG A 219 -1 N TRP A 217 O GLN A 224 SHEET 3 AA4 4 TYR A 257 GLN A 262 -1 O HIS A 260 N THR A 216 SHEET 4 AA4 4 LEU A 270 ARG A 273 -1 O LEU A 272 N CYS A 259 SHEET 1 AA5 4 LYS B 7 SER B 12 0 SHEET 2 AA5 4 ASN B 22 PHE B 31 -1 O ASN B 25 N TYR B 11 SHEET 3 AA5 4 PHE B 63 PHE B 71 -1 O THR B 69 N LEU B 24 SHEET 4 AA5 4 GLU B 51 HIS B 52 -1 N GLU B 51 O TYR B 68 SHEET 1 AA6 4 LYS B 7 SER B 12 0 SHEET 2 AA6 4 ASN B 22 PHE B 31 -1 O ASN B 25 N TYR B 11 SHEET 3 AA6 4 PHE B 63 PHE B 71 -1 O THR B 69 N LEU B 24 SHEET 4 AA6 4 SER B 56 PHE B 57 -1 N SER B 56 O TYR B 64 SHEET 1 AA7 4 GLU B 45 ARG B 46 0 SHEET 2 AA7 4 GLU B 37 LYS B 42 -1 N LYS B 42 O GLU B 45 SHEET 3 AA7 4 TYR B 79 ASN B 84 -1 O ALA B 80 N LEU B 41 SHEET 4 AA7 4 LYS B 92 LYS B 95 -1 O LYS B 92 N VAL B 83 SHEET 1 AA8 8 GLU D 46 PRO D 47 0 SHEET 2 AA8 8 THR D 31 ASP D 37 -1 N ARG D 35 O GLU D 46 SHEET 3 AA8 8 ARG D 21 VAL D 28 -1 N GLY D 26 O PHE D 33 SHEET 4 AA8 8 HIS D 3 VAL D 12 -1 N ARG D 6 O TYR D 27 SHEET 5 AA8 8 THR D 94 VAL D 103 -1 O TYR D 99 N TYR D 7 SHEET 6 AA8 8 PHE D 109 TYR D 118 -1 O ARG D 111 N ASP D 102 SHEET 7 AA8 8 LYS D 121 LEU D 126 -1 O ILE D 124 N TYR D 116 SHEET 8 AA8 8 TRP D 133 ALA D 135 -1 O THR D 134 N ALA D 125 SHEET 1 AA9 4 LYS D 186 VAL D 194 0 SHEET 2 AA9 4 GLU D 198 PHE D 208 -1 O TRP D 204 N HIS D 188 SHEET 3 AA9 4 PHE D 241 PRO D 250 -1 O ALA D 245 N CYS D 203 SHEET 4 AA9 4 THR D 228 LEU D 230 -1 N GLU D 229 O ALA D 246 SHEET 1 AB1 4 LYS D 186 VAL D 194 0 SHEET 2 AB1 4 GLU D 198 PHE D 208 -1 O TRP D 204 N HIS D 188 SHEET 3 AB1 4 PHE D 241 PRO D 250 -1 O ALA D 245 N CYS D 203 SHEET 4 AB1 4 ARG D 234 PRO D 235 -1 N ARG D 234 O GLN D 242 SHEET 1 AB2 4 GLU D 222 GLN D 224 0 SHEET 2 AB2 4 THR D 214 ARG D 219 -1 N TRP D 217 O GLN D 224 SHEET 3 AB2 4 TYR D 257 GLN D 262 -1 O HIS D 260 N THR D 216 SHEET 4 AB2 4 LEU D 270 ARG D 273 -1 O LEU D 272 N CYS D 259 SHEET 1 AB3 4 LYS E 7 SER E 12 0 SHEET 2 AB3 4 ASN E 22 PHE E 31 -1 O ASN E 25 N TYR E 11 SHEET 3 AB3 4 PHE E 63 PHE E 71 -1 O THR E 69 N LEU E 24 SHEET 4 AB3 4 GLU E 51 HIS E 52 -1 N GLU E 51 O TYR E 68 SHEET 1 AB4 4 LYS E 7 SER E 12 0 SHEET 2 AB4 4 ASN E 22 PHE E 31 -1 O ASN E 25 N TYR E 11 SHEET 3 AB4 4 PHE E 63 PHE E 71 -1 O THR E 69 N LEU E 24 SHEET 4 AB4 4 SER E 56 PHE E 57 -1 N SER E 56 O TYR E 64 SHEET 1 AB5 4 GLU E 45 ARG E 46 0 SHEET 2 AB5 4 GLU E 37 LYS E 42 -1 N LYS E 42 O GLU E 45 SHEET 3 AB5 4 TYR E 79 ASN E 84 -1 O ALA E 80 N LEU E 41 SHEET 4 AB5 4 LYS E 92 LYS E 95 -1 O LYS E 92 N VAL E 83 SSBOND 1 CYS A 101 CYS A 164 1555 1555 2.09 SSBOND 2 CYS A 203 CYS A 259 1555 1555 2.05 SSBOND 3 CYS B 26 CYS B 81 1555 1555 2.00 SSBOND 4 CYS D 101 CYS D 164 1555 1555 2.09 SSBOND 5 CYS D 203 CYS D 259 1555 1555 2.05 SSBOND 6 CYS E 26 CYS E 81 1555 1555 2.04 CISPEP 1 TYR A 209 PRO A 210 0 0.68 CISPEP 2 HIS B 32 PRO B 33 0 -0.92 CISPEP 3 TYR D 209 PRO D 210 0 2.80 CISPEP 4 HIS E 32 PRO E 33 0 0.21 CRYST1 66.052 157.570 185.912 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015140 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006346 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005379 0.00000