HEADER IMMUNE SYSTEM 30-JUN-23 8TCA TITLE STRUCTURE OF A MOUSE IGG ANTIBODY ANTIGEN-BINDING FRAGMENT (FAB) TITLE 2 TARGETING N6-METHYLADENOSINE (M6A), AN RNA MODIFICATION, NO LIGAND COMPND MOL_ID: 1; COMPND 2 MOLECULE: M6A BINDING IGG FAB, HEAVY CHAIN; COMPND 3 CHAIN: H; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: M6A BINDING IGG FAB, LIGHT CHAIN; COMPND 7 CHAIN: L; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_TAXID: 10090; SOURCE 4 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 6 EXPRESSION_SYSTEM_CELL_LINE: HEK293; SOURCE 7 EXPRESSION_SYSTEM_ATCC_NUMBER: CRL-1573; SOURCE 8 EXPRESSION_SYSTEM_ORGAN: KIDNEY; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 11 ORGANISM_TAXID: 10090; SOURCE 12 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 14 EXPRESSION_SYSTEM_CELL_LINE: HEK293; SOURCE 15 EXPRESSION_SYSTEM_ATCC_NUMBER: CRL-1573; SOURCE 16 EXPRESSION_SYSTEM_ORGAN: KIDNEY KEYWDS IGG, FAB, M6A, RNA, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR M.C.ANGELO,S.T.AOKI REVDAT 1 07-FEB-24 8TCA 0 JRNL AUTH M.C.ANGELO,S.T.AOKI JRNL TITL STRUCTURE OF A MOUSE IGG ANTIBODY ANTIGEN-BINDING FRAGMENT JRNL TITL 2 (FAB) TARGETING N6-METHYLADENOSINE (M6A), AN RNA JRNL TITL 3 MODIFICATION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.02 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.02 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 70.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 31042 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.950 REMARK 3 FREE R VALUE TEST SET COUNT : 1547 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 70.0000 - 4.4800 0.96 2859 149 0.1508 0.1689 REMARK 3 2 4.4800 - 3.5600 0.97 2732 156 0.1407 0.2002 REMARK 3 3 3.5600 - 3.1100 0.99 2713 157 0.1544 0.2033 REMARK 3 4 3.1100 - 2.8300 0.99 2715 153 0.1655 0.2196 REMARK 3 5 2.8200 - 2.6200 0.98 2674 135 0.1813 0.2452 REMARK 3 6 2.6200 - 2.4700 0.99 2715 137 0.2028 0.2775 REMARK 3 7 2.4700 - 2.3400 1.00 2704 131 0.2229 0.2652 REMARK 3 8 2.3400 - 2.2400 1.00 2685 143 0.2418 0.2788 REMARK 3 9 2.2400 - 2.1600 0.99 2694 120 0.2475 0.2952 REMARK 3 10 2.1600 - 2.0800 0.96 2592 136 0.2862 0.3323 REMARK 3 11 2.0800 - 2.0200 0.97 2593 130 0.3103 0.3198 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.259 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.321 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.12 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 3349 REMARK 3 ANGLE : 1.183 4557 REMARK 3 CHIRALITY : 0.071 523 REMARK 3 PLANARITY : 0.019 570 REMARK 3 DIHEDRAL : 13.910 1173 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 1 THROUGH 17 ) REMARK 3 ORIGIN FOR THE GROUP (A): 43.7436 62.8026 69.2458 REMARK 3 T TENSOR REMARK 3 T11: 0.2607 T22: 0.2918 REMARK 3 T33: 0.1781 T12: -0.0463 REMARK 3 T13: -0.0374 T23: -0.0229 REMARK 3 L TENSOR REMARK 3 L11: 2.5711 L22: 0.9088 REMARK 3 L33: 3.0188 L12: -0.3257 REMARK 3 L13: -2.0336 L23: 0.4965 REMARK 3 S TENSOR REMARK 3 S11: -0.2991 S12: -0.4363 S13: -0.0949 REMARK 3 S21: 0.5147 S22: 0.2111 S23: 0.0984 REMARK 3 S31: 0.3274 S32: 0.3518 S33: 0.1466 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 18 THROUGH 43 ) REMARK 3 ORIGIN FOR THE GROUP (A): 47.1545 61.4158 59.8144 REMARK 3 T TENSOR REMARK 3 T11: 0.2154 T22: 0.2557 REMARK 3 T33: 0.2177 T12: -0.0383 REMARK 3 T13: -0.0068 T23: -0.0208 REMARK 3 L TENSOR REMARK 3 L11: 1.7330 L22: 2.2686 REMARK 3 L33: 2.6563 L12: 0.0377 REMARK 3 L13: -1.6605 L23: 0.0847 REMARK 3 S TENSOR REMARK 3 S11: -0.0871 S12: -0.1108 S13: -0.0059 REMARK 3 S21: 0.0670 S22: -0.0207 S23: 0.0935 REMARK 3 S31: 0.2169 S32: -0.0592 S33: 0.1056 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 44 THROUGH 114 ) REMARK 3 ORIGIN FOR THE GROUP (A): 46.2721 66.1059 59.3497 REMARK 3 T TENSOR REMARK 3 T11: 0.2079 T22: 0.2334 REMARK 3 T33: 0.2014 T12: -0.0341 REMARK 3 T13: -0.0108 T23: -0.0343 REMARK 3 L TENSOR REMARK 3 L11: 1.2142 L22: 1.2325 REMARK 3 L33: 2.3292 L12: -0.1201 REMARK 3 L13: -1.2209 L23: 0.2434 REMARK 3 S TENSOR REMARK 3 S11: 0.0832 S12: -0.0664 S13: 0.0205 REMARK 3 S21: -0.0139 S22: -0.0402 S23: -0.0803 REMARK 3 S31: -0.1438 S32: 0.1852 S33: -0.0817 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 115 THROUGH 162 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.6488 51.2528 79.9362 REMARK 3 T TENSOR REMARK 3 T11: 0.2536 T22: 0.1933 REMARK 3 T33: 0.2591 T12: 0.0365 REMARK 3 T13: -0.0307 T23: -0.0482 REMARK 3 L TENSOR REMARK 3 L11: 1.1504 L22: 1.7934 REMARK 3 L33: 1.9269 L12: 0.2229 REMARK 3 L13: -0.0635 L23: -0.0307 REMARK 3 S TENSOR REMARK 3 S11: -0.0095 S12: 0.0632 S13: -0.1889 REMARK 3 S21: 0.1272 S22: 0.2080 S23: -0.1484 REMARK 3 S31: 0.3726 S32: 0.0866 S33: 0.0119 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 163 THROUGH 189 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.8287 47.5093 75.0491 REMARK 3 T TENSOR REMARK 3 T11: 0.3397 T22: 0.2499 REMARK 3 T33: 0.3220 T12: 0.0482 REMARK 3 T13: -0.0233 T23: -0.1005 REMARK 3 L TENSOR REMARK 3 L11: 1.8407 L22: 2.2048 REMARK 3 L33: 2.2949 L12: 0.4064 REMARK 3 L13: -0.0227 L23: 0.4523 REMARK 3 S TENSOR REMARK 3 S11: 0.1130 S12: 0.3167 S13: -0.4235 REMARK 3 S21: -0.0910 S22: 0.1344 S23: -0.1690 REMARK 3 S31: 0.3589 S32: 0.4554 S33: -0.2397 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 190 THROUGH 218 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.9708 43.1888 86.2750 REMARK 3 T TENSOR REMARK 3 T11: 0.6351 T22: 0.2797 REMARK 3 T33: 0.4720 T12: 0.0758 REMARK 3 T13: -0.1578 T23: -0.0190 REMARK 3 L TENSOR REMARK 3 L11: 1.5598 L22: 4.7429 REMARK 3 L33: 0.7382 L12: 1.1801 REMARK 3 L13: -0.6928 L23: 0.2631 REMARK 3 S TENSOR REMARK 3 S11: 0.1542 S12: -0.2240 S13: -0.4709 REMARK 3 S21: 0.9405 S22: 0.1302 S23: -0.5651 REMARK 3 S31: 0.7423 S32: 0.3468 S33: -0.1387 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 1 THROUGH 71 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.6764 53.3198 44.7074 REMARK 3 T TENSOR REMARK 3 T11: 0.2016 T22: 0.2011 REMARK 3 T33: 0.1491 T12: -0.0043 REMARK 3 T13: -0.0141 T23: -0.0154 REMARK 3 L TENSOR REMARK 3 L11: 1.7257 L22: 2.9655 REMARK 3 L33: 1.5792 L12: 0.6812 REMARK 3 L13: -0.3237 L23: -0.0528 REMARK 3 S TENSOR REMARK 3 S11: 0.0456 S12: -0.0097 S13: 0.0209 REMARK 3 S21: 0.0319 S22: -0.0575 S23: -0.0151 REMARK 3 S31: -0.0069 S32: -0.0237 S33: 0.0135 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 72 THROUGH 153 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.7393 48.4632 60.5397 REMARK 3 T TENSOR REMARK 3 T11: 0.2622 T22: 0.2109 REMARK 3 T33: 0.2125 T12: -0.0131 REMARK 3 T13: -0.0006 T23: -0.0079 REMARK 3 L TENSOR REMARK 3 L11: 0.8948 L22: 0.2871 REMARK 3 L33: 1.6814 L12: 0.3374 REMARK 3 L13: -1.1790 L23: -0.6064 REMARK 3 S TENSOR REMARK 3 S11: -0.0892 S12: 0.0062 S13: -0.0017 REMARK 3 S21: 0.0094 S22: 0.0580 S23: 0.0787 REMARK 3 S31: 0.2434 S32: -0.1064 S33: 0.0447 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 154 THROUGH 213 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.6277 46.2011 71.4030 REMARK 3 T TENSOR REMARK 3 T11: 0.2658 T22: 0.2726 REMARK 3 T33: 0.2637 T12: -0.0346 REMARK 3 T13: 0.0162 T23: 0.0163 REMARK 3 L TENSOR REMARK 3 L11: 3.0884 L22: 1.2621 REMARK 3 L33: 3.7758 L12: 0.3572 REMARK 3 L13: -1.5141 L23: -0.0142 REMARK 3 S TENSOR REMARK 3 S11: 0.0392 S12: 0.0950 S13: 0.1499 REMARK 3 S21: -0.0205 S22: -0.0103 S23: 0.1304 REMARK 3 S31: 0.1265 S32: -0.1937 S33: -0.0382 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8TCA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-JUL-23. REMARK 100 THE DEPOSITION ID IS D_1000275364. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-MAR-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : KOHZU HLD-15 DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31198 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.020 REMARK 200 RESOLUTION RANGE LOW (A) : 70.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 7.400 REMARK 200 R MERGE (I) : 0.21830 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.7100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.02 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.09 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.7 REMARK 200 DATA REDUNDANCY IN SHELL : 7.30 REMARK 200 R MERGE FOR SHELL (I) : 2.29000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.080 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 2K [20% (V/V)], MGCL2 [0.2 M], REMARK 280 TRIS PH 8.0 [0.1 M], GLYCEROL [5-15% (V/V)], VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 72.56350 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 39.95300 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 39.95300 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 108.84525 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 39.95300 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 39.95300 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 36.28175 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 39.95300 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 39.95300 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 108.84525 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 39.95300 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 39.95300 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 36.28175 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 72.56350 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5380 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER H 133 REMARK 465 ALA H 134 REMARK 465 ALA H 135 REMARK 465 GLN H 136 REMARK 465 THR H 137 REMARK 465 ASN H 138 REMARK 465 ASP H 219 REMARK 465 CYS H 220 REMARK 465 GLY H 221 REMARK 465 CYS L 214 REMARK 465 SER L 215 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN H 57 170.51 177.94 REMARK 500 THR H 103 -50.61 69.52 REMARK 500 TYR L 34 56.27 37.10 REMARK 500 THR L 53 -54.40 69.66 REMARK 500 SER L 95 -45.27 77.58 REMARK 500 ASN L 96 17.20 -140.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG H 218 0.23 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8SIP RELATED DB: PDB DBREF 8TCA H 1 221 PDB 8TCA 8TCA 1 221 DBREF 8TCA L 1 215 PDB 8TCA 8TCA 1 215 SEQRES 1 H 221 GLU VAL LYS LEU GLU GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 H 221 PRO GLY GLY SER MET LYS LEU SER CYS VAL ALA SER GLY SEQRES 3 H 221 PHE SER PHE THR ASN TYR TRP MET ASN TRP VAL ARG GLN SEQRES 4 H 221 SER PRO GLU LYS GLY LEU GLU TRP VAL ALA GLU ILE SER SEQRES 5 H 221 LEU LYS SER SER ASN TYR VAL THR TYR TYR ALA GLU SER SEQRES 6 H 221 VAL LYS GLY ARG PHE THR ILE SER SER ASP LYS SER LYS SEQRES 7 H 221 ARG SER VAL TYR LEU GLN MET ASN ASN LEU ARG ALA GLU SEQRES 8 H 221 ASP THR GLY ILE TYR PHE CYS SER LEU TRP GLN THR TRP SEQRES 9 H 221 PHE ALA TYR TRP GLY GLN GLY THR LEU VAL THR VAL SER SEQRES 10 H 221 SER ALA LYS THR THR PRO PRO SER VAL TYR PRO LEU ALA SEQRES 11 H 221 PRO GLY SER ALA ALA GLN THR ASN SER MET VAL THR LEU SEQRES 12 H 221 GLY CYS LEU VAL LYS GLY TYR PHE PRO GLU PRO VAL THR SEQRES 13 H 221 VAL THR TRP ASN SER GLY SER LEU SER SER GLY VAL HIS SEQRES 14 H 221 THR PHE PRO ALA VAL LEU GLN SER ASP LEU TYR THR LEU SEQRES 15 H 221 SER SER SER VAL THR VAL PRO SER SER THR TRP PRO SER SEQRES 16 H 221 GLU THR VAL THR CYS ASN VAL ALA HIS PRO ALA SER SER SEQRES 17 H 221 THR LYS VAL ASP LYS LYS ILE VAL PRO ARG ASP CYS GLY SEQRES 1 L 215 GLN ALA VAL VAL THR GLN GLU SER ALA LEU THR THR SER SEQRES 2 L 215 PRO GLY GLU THR VAL THR LEU THR CYS ARG SER SER THR SEQRES 3 L 215 GLY ALA VAL THR THR SER ASN TYR ALA ASN TRP VAL GLN SEQRES 4 L 215 GLU LYS PRO ASP HIS LEU PHE THR GLY LEU ILE GLY GLY SEQRES 5 L 215 THR ASN ASN ARG ALA PRO GLY VAL PRO ALA ARG PHE SER SEQRES 6 L 215 GLY SER LEU ILE GLY ASP LYS ALA ALA LEU THR ILE THR SEQRES 7 L 215 GLY ALA GLN THR ASP ASP GLU ALA ILE TYR PHE CYS ALA SEQRES 8 L 215 LEU TRP TYR SER ASN HIS LEU VAL PHE GLY GLY GLY THR SEQRES 9 L 215 LYS LEU THR VAL LEU GLY GLN PRO LYS SER SER PRO SER SEQRES 10 L 215 VAL THR LEU PHE PRO PRO SER SER GLU GLU LEU GLU THR SEQRES 11 L 215 ASN LYS ALA THR LEU VAL CYS THR ILE THR ASP PHE TYR SEQRES 12 L 215 PRO GLY VAL VAL THR VAL ASP TRP LYS VAL ASP GLY THR SEQRES 13 L 215 PRO VAL THR GLN GLY MET GLU THR THR GLN PRO SER LYS SEQRES 14 L 215 GLN SER ASN ASN LYS TYR MET ALA SER SER TYR LEU THR SEQRES 15 L 215 LEU THR ALA ARG ALA TRP GLU ARG HIS SER SER TYR SER SEQRES 16 L 215 CYS GLN VAL THR HIS GLU GLY HIS THR VAL GLU LYS SER SEQRES 17 L 215 LEU SER ARG ALA ASP CYS SER HET EDO H 301 4 HET EDO H 302 4 HET EDO H 303 4 HET EDO H 304 4 HET EDO H 305 4 HET EDO L 301 4 HET EDO L 302 4 HET EDO L 303 4 HET EDO L 304 4 HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO 9(C2 H6 O2) FORMUL 12 HOH *287(H2 O) HELIX 1 AA1 GLU H 64 LYS H 67 5 4 HELIX 2 AA2 LYS H 76 LYS H 78 5 3 HELIX 3 AA3 ARG H 89 THR H 93 5 5 HELIX 4 AA4 SER H 161 SER H 163 5 3 HELIX 5 AA5 PRO H 205 SER H 208 5 4 HELIX 6 AA6 THR L 30 TYR L 34 5 5 HELIX 7 AA7 GLN L 81 GLU L 85 5 5 HELIX 8 AA8 SER L 124 GLU L 129 1 6 HELIX 9 AA9 ALA L 185 ARG L 190 1 6 SHEET 1 AA1 4 LYS H 3 SER H 7 0 SHEET 2 AA1 4 MET H 18 SER H 25 -1 O SER H 21 N SER H 7 SHEET 3 AA1 4 SER H 80 MET H 85 -1 O LEU H 83 N LEU H 20 SHEET 4 AA1 4 PHE H 70 ASP H 75 -1 N SER H 73 O TYR H 82 SHEET 1 AA2 6 LEU H 11 VAL H 12 0 SHEET 2 AA2 6 THR H 112 VAL H 116 1 O THR H 115 N VAL H 12 SHEET 3 AA2 6 GLY H 94 TRP H 101 -1 N TYR H 96 O THR H 112 SHEET 4 AA2 6 TRP H 33 SER H 40 -1 N VAL H 37 O PHE H 97 SHEET 5 AA2 6 GLY H 44 SER H 52 -1 O ALA H 49 N TRP H 36 SHEET 6 AA2 6 THR H 60 TYR H 62 -1 O TYR H 61 N GLU H 50 SHEET 1 AA3 4 LEU H 11 VAL H 12 0 SHEET 2 AA3 4 THR H 112 VAL H 116 1 O THR H 115 N VAL H 12 SHEET 3 AA3 4 GLY H 94 TRP H 101 -1 N TYR H 96 O THR H 112 SHEET 4 AA3 4 PHE H 105 TRP H 108 -1 O ALA H 106 N LEU H 100 SHEET 1 AA4 4 SER H 125 LEU H 129 0 SHEET 2 AA4 4 MET H 140 TYR H 150 -1 O LEU H 146 N TYR H 127 SHEET 3 AA4 4 LEU H 179 PRO H 189 -1 O TYR H 180 N TYR H 150 SHEET 4 AA4 4 HIS H 169 THR H 170 -1 N HIS H 169 O SER H 185 SHEET 1 AA5 4 SER H 125 LEU H 129 0 SHEET 2 AA5 4 MET H 140 TYR H 150 -1 O LEU H 146 N TYR H 127 SHEET 3 AA5 4 LEU H 179 PRO H 189 -1 O TYR H 180 N TYR H 150 SHEET 4 AA5 4 VAL H 174 GLN H 176 -1 N GLN H 176 O LEU H 179 SHEET 1 AA6 3 THR H 156 TRP H 159 0 SHEET 2 AA6 3 VAL H 198 HIS H 204 -1 O ASN H 201 N THR H 158 SHEET 3 AA6 3 THR H 209 ILE H 215 -1 O ILE H 215 N VAL H 198 SHEET 1 AA7 4 VAL L 4 GLN L 6 0 SHEET 2 AA7 4 THR L 17 SER L 24 -1 O ARG L 23 N THR L 5 SHEET 3 AA7 4 LYS L 72 THR L 78 -1 O LEU L 75 N LEU L 20 SHEET 4 AA7 4 PHE L 64 ILE L 69 -1 N SER L 65 O THR L 76 SHEET 1 AA8 6 ALA L 9 THR L 12 0 SHEET 2 AA8 6 THR L 104 VAL L 108 1 O THR L 107 N LEU L 10 SHEET 3 AA8 6 ALA L 86 TRP L 93 -1 N ALA L 86 O LEU L 106 SHEET 4 AA8 6 ASN L 36 LYS L 41 -1 N GLU L 40 O ILE L 87 SHEET 5 AA8 6 LEU L 45 GLY L 51 -1 O LEU L 45 N LYS L 41 SHEET 6 AA8 6 ASN L 55 ARG L 56 -1 O ASN L 55 N GLY L 51 SHEET 1 AA9 4 ALA L 9 THR L 12 0 SHEET 2 AA9 4 THR L 104 VAL L 108 1 O THR L 107 N LEU L 10 SHEET 3 AA9 4 ALA L 86 TRP L 93 -1 N ALA L 86 O LEU L 106 SHEET 4 AA9 4 LEU L 98 PHE L 100 -1 O VAL L 99 N LEU L 92 SHEET 1 AB1 4 SER L 117 PHE L 121 0 SHEET 2 AB1 4 LYS L 132 PHE L 142 -1 O VAL L 136 N PHE L 121 SHEET 3 AB1 4 TYR L 175 THR L 184 -1 O LEU L 183 N ALA L 133 SHEET 4 AB1 4 MET L 162 THR L 164 -1 N GLU L 163 O TYR L 180 SHEET 1 AB2 4 SER L 117 PHE L 121 0 SHEET 2 AB2 4 LYS L 132 PHE L 142 -1 O VAL L 136 N PHE L 121 SHEET 3 AB2 4 TYR L 175 THR L 184 -1 O LEU L 183 N ALA L 133 SHEET 4 AB2 4 SER L 168 LYS L 169 -1 N SER L 168 O MET L 176 SHEET 1 AB3 4 THR L 156 PRO L 157 0 SHEET 2 AB3 4 THR L 148 VAL L 153 -1 N VAL L 153 O THR L 156 SHEET 3 AB3 4 SER L 193 HIS L 200 -1 O GLN L 197 N ASP L 150 SHEET 4 AB3 4 HIS L 203 SER L 210 -1 O LYS L 207 N CYS L 196 SSBOND 1 CYS H 22 CYS H 98 1555 1555 2.06 SSBOND 2 CYS H 145 CYS H 200 1555 1555 2.06 SSBOND 3 CYS L 22 CYS L 90 1555 1555 2.07 SSBOND 4 CYS L 137 CYS L 196 1555 1555 2.05 CISPEP 1 PHE H 151 PRO H 152 0 -9.08 CISPEP 2 GLU H 153 PRO H 154 0 -3.54 CISPEP 3 TRP H 193 PRO H 194 0 5.56 CISPEP 4 TYR L 143 PRO L 144 0 -4.68 CRYST1 79.906 79.906 145.127 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012515 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012515 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006891 0.00000