HEADER DE NOVO PROTEIN 30-JUN-23 8TCG TITLE INTEGRIN ALPHA-V BETA-6 IN COMPLEX WITH MINIBINDER B6_BP_DSLF CAVEAT 8TCG THIS ENTRY INCLUDES MULTIPLE PHYSICALLY UNREALISTIC CAVEAT 2 8TCG INTERATOMIC DISTANCES:A HD21 ASN 260 - A C1 NAG 2006 1 DIST CAVEAT 3 8TCG = 0.52;A HD21 ASN 44 - A C1 NAG 2005 1 DIST = 0.52; A HD21 CAVEAT 4 8TCG ASN 266 - D C1 NAG 1 1 DIST = 0.52 COMPND MOL_ID: 1; COMPND 2 MOLECULE: INTEGRIN ALPHA-V HEAVY CHAIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: INTEGRIN BETA-6; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: MINIBINDER B6_BP_DSLF; COMPND 11 CHAIN: C; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ITGAV, MSK8, VNRA, VTNR; SOURCE 6 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 10029; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: ITGB6; SOURCE 13 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 10029; SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 17 ORGANISM_TAXID: 32630; SOURCE 18 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 19 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS COMPLEX, HETERODIMER, SIGNALING, ECM-BINDING, DE NOVO PROTEIN EXPDTA ELECTRON MICROSCOPY AUTHOR M.G.CAMPBELL,A.FERNANDEZ,A.ROY,J.KRAFT,D.BAKER REVDAT 1 27-SEP-23 8TCG 0 JRNL AUTH A.ROY,L.SHI,A.CHANG,X.DONG,A.FERNANDEZ,J.C.KRAFT,J.LI, JRNL AUTH 2 V.Q.LE,R.V.WINEGAR,G.M.CHERF,D.SLOCUM,P.D.POULSON, JRNL AUTH 3 G.E.CASPER,M.L.VALLECILLO-ZUNIGA,J.C.VALDOZ,M.C.MIRANDA, JRNL AUTH 4 H.BAI,Y.KIPNIS,A.OLSHEFSKY,T.PRIYA,L.CARTER,R.RAVICHANDRAN, JRNL AUTH 5 C.M.CHOW,M.R.JOHNSON,S.CHENG,M.SMITH,C.OVERED-SAYER, JRNL AUTH 6 D.K.FINCH,D.LOWE,A.K.BERA,G.MATUTE-BELLO,T.P.BIRKLAND, JRNL AUTH 7 F.DIMAIO,G.RAGHU,J.R.COCHRAN,L.J.STEWART,M.G.CAMPBELL, JRNL AUTH 8 P.M.VAN RY,T.SPRINGER,D.BAKER JRNL TITL DE NOVO DESIGN OF HIGHLY SELECTIVE MINIPROTEIN INHIBITORS OF JRNL TITL 2 INTEGRINS ALPHA V BETA 6 AND ALPHA V BETA 8. JRNL REF NAT COMMUN V. 14 5660 2023 JRNL REFN ESSN 2041-1723 JRNL PMID 37704610 JRNL DOI 10.1038/S41467-023-41272-Z REMARK 2 REMARK 2 RESOLUTION. 3.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : NULL REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.400 REMARK 3 NUMBER OF PARTICLES : 124715 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 8TCG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-JUL-23. REMARK 100 THE DEPOSITION ID IS D_1000275647. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : TERNARY COMPLEX OF INTEGRIN REMARK 245 HETERODIMER (ALPHA-V BETA-6) REMARK 245 AND THE DE NOVO MINIBINDER REMARK 245 PROTEIN B6_BP_DSLF REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.40 REMARK 245 SAMPLE DETAILS : INTEGRIN EXPRESSED IN EXPICHO REMARK 245 CELLS, MINIBINDER EXPRESSED IN E. COLI REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : TFS GLACIOS REMARK 245 DETECTOR TYPE : GATAN K3 (6K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1000.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 1800.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 5000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 200 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HD21 ASN A 260 C1 NAG A 2006 0.52 REMARK 500 HD21 ASN A 44 C1 NAG A 2005 0.52 REMARK 500 HD21 ASN A 266 C1 NAG D 1 0.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 245 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 TYR A 275 CB - CG - CD2 ANGL. DEV. = -3.9 DEGREES REMARK 500 ASN C 39 OD1 - CG - ND2 ANGL. DEV. = 16.3 DEGREES REMARK 500 ASN C 39 CB - CG - OD1 ANGL. DEV. = -77.6 DEGREES REMARK 500 ASN C 39 CB - CG - ND2 ANGL. DEV. = -22.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 30 -169.67 68.21 REMARK 500 ALA A 40 76.54 -152.22 REMARK 500 THR A 45 -174.36 61.69 REMARK 500 THR A 64 -49.15 68.51 REMARK 500 GLN A 102 -118.53 52.77 REMARK 500 ASP A 148 178.48 70.49 REMARK 500 ALA A 213 -166.40 -128.89 REMARK 500 ASN A 232 -0.02 -144.12 REMARK 500 VAL B 161 -71.38 -133.27 REMARK 500 TYR B 185 146.32 -172.75 REMARK 500 MET B 261 -26.11 90.24 REMARK 500 GLU B 353 -109.96 55.52 REMARK 500 SER C 51 -57.02 -125.68 REMARK 500 ARG C 55 -55.78 -123.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A2004 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 232 OD1 REMARK 620 2 ASP A 234 OD1 75.6 REMARK 620 3 ASP A 234 OD2 79.7 55.6 REMARK 620 4 ILE A 236 O 142.9 87.4 117.3 REMARK 620 5 ASP A 238 OD1 108.2 163.5 108.6 97.5 REMARK 620 6 ASP A 238 OD2 77.1 138.8 145.5 96.4 56.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A2001 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 284 OD1 REMARK 620 2 ASN A 286 OD1 76.3 REMARK 620 3 ASP A 288 OD1 74.5 88.9 REMARK 620 4 ASP A 288 OD2 111.6 65.9 51.1 REMARK 620 5 TYR A 290 O 88.5 164.8 86.1 120.4 REMARK 620 6 ASP A 292 OD1 149.4 102.6 135.9 95.0 90.9 REMARK 620 7 ASP A 292 OD2 98.0 80.2 168.1 126.5 103.2 52.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A2002 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 349 OD1 REMARK 620 2 ASP A 351 OD1 87.8 REMARK 620 3 ASP A 353 OD1 82.8 89.7 REMARK 620 4 PHE A 355 O 78.4 166.2 88.2 REMARK 620 5 ASP A 357 OD1 153.4 103.5 120.7 89.2 REMARK 620 6 ASP A 357 OD2 113.7 86.9 162.9 98.9 44.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A2003 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 414 OD1 REMARK 620 2 ASP A 416 OD1 86.1 REMARK 620 3 ASN A 418 OD1 75.8 83.3 REMARK 620 4 TYR A 420 O 84.2 162.9 80.7 REMARK 620 5 ASP A 422 OD1 158.1 102.9 124.6 91.1 REMARK 620 6 ASP A 422 OD2 109.0 91.5 172.8 104.9 51.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B2002 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 125 OG REMARK 620 2 SER B 127 OG 83.9 REMARK 620 3 GLU B 223 OE2 121.7 134.6 REMARK 620 4 ASP C 12 OD1 95.0 101.5 111.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B2001 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 127 O REMARK 620 2 ASP B 130 OD1 85.8 REMARK 620 3 ASP B 130 OD2 132.8 52.1 REMARK 620 4 ASP B 131 OD2 126.1 96.9 84.2 REMARK 620 5 ASP B 254 OD2 84.8 167.0 132.0 95.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B2003 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 162 OE2 REMARK 620 2 ASN B 218 OD1 85.0 REMARK 620 3 ASP B 220 O 158.7 74.5 REMARK 620 4 ASP B 220 OD1 96.8 99.0 80.9 REMARK 620 5 PRO B 222 O 92.0 152.5 109.0 108.6 REMARK 620 N 1 2 3 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8TCF RELATED DB: PDB REMARK 900 ACCESSION ID 8TCF IS A RELATED INTEGRIN BOUND TO A DE NOVO REMARK 900 MINIBINDER REMARK 900 RELATED ID: EMD-41154 RELATED DB: EMDB REMARK 900 INTEGRIN ALPHA-V BETA-6 IN COMPLEX WITH MINIBINDER B6_BP_DSLF DBREF 8TCG A 1 440 UNP P06756 ITAV_HUMAN 31 469 DBREF 8TCG B 113 354 UNP P18564 ITB6_HUMAN 130 371 DBREF 8TCG C 3 74 PDB 8TCG 8TCG 3 74 SEQADV 8TCG GLY A 400 UNP P06756 INSERTION SEQADV 8TCG CYS A 401 UNP P06756 MET 430 CONFLICT SEQADV 8TCG CYS B 270 UNP P18564 ILE 287 CONFLICT SEQRES 1 A 440 PHE ASN LEU ASP VAL ASP SER PRO ALA GLU TYR SER GLY SEQRES 2 A 440 PRO GLU GLY SER TYR PHE GLY PHE ALA VAL ASP PHE PHE SEQRES 3 A 440 VAL PRO SER ALA SER SER ARG MET PHE LEU LEU VAL GLY SEQRES 4 A 440 ALA PRO LYS ALA ASN THR THR GLN PRO GLY ILE VAL GLU SEQRES 5 A 440 GLY GLY GLN VAL LEU LYS CYS ASP TRP SER SER THR ARG SEQRES 6 A 440 ARG CYS GLN PRO ILE GLU PHE ASP ALA THR GLY ASN ARG SEQRES 7 A 440 ASP TYR ALA LYS ASP ASP PRO LEU GLU PHE LYS SER HIS SEQRES 8 A 440 GLN TRP PHE GLY ALA SER VAL ARG SER LYS GLN ASP LYS SEQRES 9 A 440 ILE LEU ALA CYS ALA PRO LEU TYR HIS TRP ARG THR GLU SEQRES 10 A 440 MET LYS GLN GLU ARG GLU PRO VAL GLY THR CYS PHE LEU SEQRES 11 A 440 GLN ASP GLY THR LYS THR VAL GLU TYR ALA PRO CYS ARG SEQRES 12 A 440 SER GLN ASP ILE ASP ALA ASP GLY GLN GLY PHE CYS GLN SEQRES 13 A 440 GLY GLY PHE SER ILE ASP PHE THR LYS ALA ASP ARG VAL SEQRES 14 A 440 LEU LEU GLY GLY PRO GLY SER PHE TYR TRP GLN GLY GLN SEQRES 15 A 440 LEU ILE SER ASP GLN VAL ALA GLU ILE VAL SER LYS TYR SEQRES 16 A 440 ASP PRO ASN VAL TYR SER ILE LYS TYR ASN ASN GLN LEU SEQRES 17 A 440 ALA THR ARG THR ALA GLN ALA ILE PHE ASP ASP SER TYR SEQRES 18 A 440 LEU GLY TYR SER VAL ALA VAL GLY ASP PHE ASN GLY ASP SEQRES 19 A 440 GLY ILE ASP ASP PHE VAL SER GLY VAL PRO ARG ALA ALA SEQRES 20 A 440 ARG THR LEU GLY MET VAL TYR ILE TYR ASP GLY LYS ASN SEQRES 21 A 440 MET SER SER LEU TYR ASN PHE THR GLY GLU GLN MET ALA SEQRES 22 A 440 ALA TYR PHE GLY PHE SER VAL ALA ALA THR ASP ILE ASN SEQRES 23 A 440 GLY ASP ASP TYR ALA ASP VAL PHE ILE GLY ALA PRO LEU SEQRES 24 A 440 PHE MET ASP ARG GLY SER ASP GLY LYS LEU GLN GLU VAL SEQRES 25 A 440 GLY GLN VAL SER VAL SER LEU GLN ARG ALA SER GLY ASP SEQRES 26 A 440 PHE GLN THR THR LYS LEU ASN GLY PHE GLU VAL PHE ALA SEQRES 27 A 440 ARG PHE GLY SER ALA ILE ALA PRO LEU GLY ASP LEU ASP SEQRES 28 A 440 GLN ASP GLY PHE ASN ASP ILE ALA ILE ALA ALA PRO TYR SEQRES 29 A 440 GLY GLY GLU ASP LYS LYS GLY ILE VAL TYR ILE PHE ASN SEQRES 30 A 440 GLY ARG SER THR GLY LEU ASN ALA VAL PRO SER GLN ILE SEQRES 31 A 440 LEU GLU GLY GLN TRP ALA ALA ARG SER GLY CYS PRO PRO SEQRES 32 A 440 SER PHE GLY TYR SER MET LYS GLY ALA THR ASP ILE ASP SEQRES 33 A 440 LYS ASN GLY TYR PRO ASP LEU ILE VAL GLY ALA PHE GLY SEQRES 34 A 440 VAL ASP ARG ALA ILE LEU TYR ARG ALA ARG PRO SEQRES 1 B 242 ASP TYR PRO VAL ASP LEU TYR TYR LEU MET ASP LEU SER SEQRES 2 B 242 ALA SER MET ASP ASP ASP LEU ASN THR ILE LYS GLU LEU SEQRES 3 B 242 GLY SER ARG LEU SER LYS GLU MET SER LYS LEU THR SER SEQRES 4 B 242 ASN PHE ARG LEU GLY PHE GLY SER PHE VAL GLU LYS PRO SEQRES 5 B 242 VAL SER PRO PHE VAL LYS THR THR PRO GLU GLU ILE ALA SEQRES 6 B 242 ASN PRO CYS SER SER ILE PRO TYR PHE CYS LEU PRO THR SEQRES 7 B 242 PHE GLY PHE LYS HIS ILE LEU PRO LEU THR ASN ASP ALA SEQRES 8 B 242 GLU ARG PHE ASN GLU ILE VAL LYS ASN GLN LYS ILE SER SEQRES 9 B 242 ALA ASN ILE ASP THR PRO GLU GLY GLY PHE ASP ALA ILE SEQRES 10 B 242 MET GLN ALA ALA VAL CYS LYS GLU LYS ILE GLY TRP ARG SEQRES 11 B 242 ASN ASP SER LEU HIS LEU LEU VAL PHE VAL SER ASP ALA SEQRES 12 B 242 ASP SER HIS PHE GLY MET ASP SER LYS LEU ALA GLY ILE SEQRES 13 B 242 VAL CYS PRO ASN ASP GLY LEU CYS HIS LEU ASP SER LYS SEQRES 14 B 242 ASN GLU TYR SER MET SER THR VAL LEU GLU TYR PRO THR SEQRES 15 B 242 ILE GLY GLN LEU ILE ASP LYS LEU VAL GLN ASN ASN VAL SEQRES 16 B 242 LEU LEU ILE PHE ALA VAL THR GLN GLU GLN VAL HIS LEU SEQRES 17 B 242 TYR GLU ASN TYR ALA LYS LEU ILE PRO GLY ALA THR VAL SEQRES 18 B 242 GLY LEU LEU GLN LYS ASP SER GLY ASN ILE LEU GLN LEU SEQRES 19 B 242 ILE ILE SER ALA TYR GLU GLU LEU SEQRES 1 C 72 CYS VAL VAL ARG PHE VAL PHE ARG GLY ASP LEU ALA GLU SEQRES 2 C 72 LEU MET LEU ARG ALA VAL LYS ASP HIS LEU LYS LYS GLU SEQRES 3 C 72 GLY PRO HIS TRP ASN ILE THR SER THR ASN ASN GLY LYS SEQRES 4 C 72 GLU LEU VAL VAL ARG GLY ILE HIS GLU SER ASP ALA LYS SEQRES 5 C 72 ARG ILE ALA LYS TRP VAL GLU LYS ARG PHE PRO ARG VAL SEQRES 6 C 72 HIS THR GLU THR GLN CYS ASP HET NAG D 1 27 HET NAG D 2 27 HET BMA D 3 21 HET MAN D 4 22 HET CA A2001 1 HET CA A2002 1 HET CA A2003 1 HET CA A2004 1 HET NAG A2005 28 HET NAG A2006 28 HET MN B2001 1 HET MN B2002 1 HET MN B2003 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM CA CALCIUM ION HETNAM MN MANGANESE (II) ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 4 NAG 4(C8 H15 N O6) FORMUL 4 BMA C6 H12 O6 FORMUL 4 MAN C6 H12 O6 FORMUL 5 CA 4(CA 2+) FORMUL 11 MN 3(MN 2+) HELIX 1 AA1 GLY A 175 GLN A 180 1 6 HELIX 2 AA2 VAL A 188 LYS A 194 1 7 HELIX 3 AA3 GLN A 214 ASP A 218 5 5 HELIX 4 AA4 ARG A 245 LEU A 250 1 6 HELIX 5 AA5 GLY A 366 LYS A 370 5 5 HELIX 6 AA6 PHE A 428 VAL A 430 5 3 HELIX 7 AA7 SER B 125 ASP B 129 5 5 HELIX 8 AA8 ASP B 131 SER B 147 1 17 HELIX 9 AA9 THR B 172 ASN B 178 1 7 HELIX 10 AB1 ASP B 202 ASN B 212 1 11 HELIX 11 AB2 GLY B 224 CYS B 235 1 12 HELIX 12 AB3 CYS B 235 GLY B 240 1 6 HELIX 13 AB4 MET B 261 GLY B 267 5 7 HELIX 14 AB5 THR B 294 ASN B 305 1 12 HELIX 15 AB6 THR B 314 LYS B 326 1 13 HELIX 16 AB7 SER B 340 ALA B 350 1 11 HELIX 17 AB8 LEU C 13 GLY C 29 1 17 HELIX 18 AB9 ASN C 38 GLY C 40 5 3 HELIX 19 AC1 SER C 51 LYS C 54 5 4 HELIX 20 AC2 ARG C 55 PHE C 64 1 10 SHEET 1 AA1 4 LEU A 3 SER A 12 0 SHEET 2 AA1 4 ARG A 432 ALA A 438 -1 O ARG A 437 N ASP A 4 SHEET 3 AA1 4 ASP A 422 ALA A 427 -1 N LEU A 423 O TYR A 436 SHEET 4 AA1 4 MET A 409 THR A 413 -1 N LYS A 410 O ILE A 424 SHEET 1 AA2 4 VAL A 23 PHE A 26 0 SHEET 2 AA2 4 PHE A 35 ALA A 40 -1 O PHE A 35 N PHE A 26 SHEET 3 AA2 4 GLN A 55 ASP A 60 -1 O LEU A 57 N VAL A 38 SHEET 4 AA2 4 CYS A 67 PRO A 69 -1 O GLN A 68 N LYS A 58 SHEET 1 AA3 2 ASP A 79 ALA A 81 0 SHEET 2 AA3 2 ASP A 84 PRO A 85 -1 O ASP A 84 N TYR A 80 SHEET 1 AA4 2 GLU A 87 PHE A 88 0 SHEET 2 AA4 2 HIS A 113 TRP A 114 -1 O HIS A 113 N PHE A 88 SHEET 1 AA5 4 SER A 97 LYS A 101 0 SHEET 2 AA5 4 LYS A 104 ALA A 109 -1 O LEU A 106 N ARG A 99 SHEET 3 AA5 4 THR A 127 ASP A 132 -1 O PHE A 129 N ALA A 107 SHEET 4 AA5 4 LYS A 135 TYR A 139 -1 O TYR A 139 N CYS A 128 SHEET 1 AA6 4 SER A 160 PHE A 163 0 SHEET 2 AA6 4 ARG A 168 GLY A 173 -1 O GLY A 172 N SER A 160 SHEET 3 AA6 4 GLN A 182 GLN A 187 -1 O ASP A 186 N VAL A 169 SHEET 4 AA6 4 LEU A 208 ALA A 209 -1 O LEU A 208 N SER A 185 SHEET 1 AA7 4 VAL A 226 GLY A 229 0 SHEET 2 AA7 4 ASP A 238 VAL A 243 -1 O VAL A 240 N ALA A 227 SHEET 3 AA7 4 MET A 252 TYR A 256 -1 O TYR A 256 N PHE A 239 SHEET 4 AA7 4 SER A 263 THR A 268 -1 O LEU A 264 N ILE A 255 SHEET 1 AA8 4 VAL A 280 THR A 283 0 SHEET 2 AA8 4 ASP A 292 ALA A 297 -1 O PHE A 294 N ALA A 281 SHEET 3 AA8 4 GLN A 314 GLN A 320 -1 O SER A 318 N VAL A 293 SHEET 4 AA8 4 PHE A 326 ASN A 332 -1 O LEU A 331 N VAL A 315 SHEET 1 AA9 2 MET A 301 ARG A 303 0 SHEET 2 AA9 2 LEU A 309 GLU A 311 -1 O GLN A 310 N ASP A 302 SHEET 1 AB1 4 ILE A 344 GLY A 348 0 SHEET 2 AB1 4 ASP A 357 ALA A 362 -1 O ASP A 357 N GLY A 348 SHEET 3 AB1 4 ILE A 372 PHE A 376 -1 O ILE A 372 N ALA A 362 SHEET 4 AB1 4 GLN A 389 GLU A 392 -1 O GLN A 389 N ILE A 375 SHEET 1 AB2 2 GLY A 378 ARG A 379 0 SHEET 2 AB2 2 GLY A 382 LEU A 383 -1 O GLY A 382 N ARG A 379 SHEET 1 AB3 6 PHE B 193 THR B 200 0 SHEET 2 AB3 6 PHE B 153 PHE B 160 -1 N PHE B 157 O LEU B 197 SHEET 3 AB3 6 VAL B 116 ASP B 123 1 N LEU B 118 O ARG B 154 SHEET 4 AB3 6 LEU B 246 VAL B 252 1 O LEU B 248 N TYR B 119 SHEET 5 AB3 6 VAL B 307 VAL B 313 1 O ILE B 310 N PHE B 251 SHEET 6 AB3 6 THR B 332 LEU B 335 1 O THR B 332 N PHE B 311 SHEET 1 AB4 4 ASN C 33 THR C 37 0 SHEET 2 AB4 4 GLU C 42 ARG C 46 -1 O GLU C 42 N THR C 37 SHEET 3 AB4 4 VAL C 4 VAL C 8 -1 N PHE C 7 O LEU C 43 SHEET 4 AB4 4 HIS C 68 GLN C 72 -1 O GLN C 72 N VAL C 4 SSBOND 1 CYS A 59 CYS A 67 1555 1555 2.03 SSBOND 2 CYS A 108 CYS A 128 1555 1555 2.03 SSBOND 3 CYS A 142 CYS A 155 1555 1555 2.05 SSBOND 4 CYS A 401 CYS B 270 1555 1555 2.04 SSBOND 5 CYS B 180 CYS B 187 1555 1555 2.02 SSBOND 6 CYS B 235 CYS B 276 1555 1555 2.02 SSBOND 7 CYS C 3 CYS C 73 1555 1555 2.07 LINK ND2 ASN A 44 C1 NAG A2005 1555 1555 1.50 LINK ND2 ASN A 260 C1 NAG A2006 1555 1555 1.51 LINK ND2 ASN A 266 C1 NAG D 1 1555 1555 1.51 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.50 LINK O4 NAG D 2 C1 BMA D 3 1555 1555 1.51 LINK O6 BMA D 3 C1 MAN D 4 1555 1555 1.50 LINK OD1 ASN A 232 CA CA A2004 1555 1555 2.42 LINK OD1 ASP A 234 CA CA A2004 1555 1555 2.17 LINK OD2 ASP A 234 CA CA A2004 1555 1555 2.32 LINK O ILE A 236 CA CA A2004 1555 1555 2.22 LINK OD1 ASP A 238 CA CA A2004 1555 1555 2.22 LINK OD2 ASP A 238 CA CA A2004 1555 1555 2.23 LINK OD1 ASP A 284 CA CA A2001 1555 1555 2.24 LINK OD1 ASN A 286 CA CA A2001 1555 1555 2.58 LINK OD1 ASP A 288 CA CA A2001 1555 1555 2.12 LINK OD2 ASP A 288 CA CA A2001 1555 1555 2.62 LINK O TYR A 290 CA CA A2001 1555 1555 2.21 LINK OD1 ASP A 292 CA CA A2001 1555 1555 2.56 LINK OD2 ASP A 292 CA CA A2001 1555 1555 2.16 LINK OD1 ASP A 349 CA CA A2002 1555 1555 2.19 LINK OD1 ASP A 351 CA CA A2002 1555 1555 2.14 LINK OD1 ASP A 353 CA CA A2002 1555 1555 2.12 LINK O PHE A 355 CA CA A2002 1555 1555 2.25 LINK OD1 ASP A 357 CA CA A2002 1555 1555 3.02 LINK OD2 ASP A 357 CA CA A2002 1555 1555 2.12 LINK OD1 ASP A 414 CA CA A2003 1555 1555 2.14 LINK OD1 ASP A 416 CA CA A2003 1555 1555 2.11 LINK OD1 ASN A 418 CA CA A2003 1555 1555 2.67 LINK O TYR A 420 CA CA A2003 1555 1555 2.18 LINK OD1 ASP A 422 CA CA A2003 1555 1555 2.62 LINK OD2 ASP A 422 CA CA A2003 1555 1555 2.14 LINK OG SER B 125 MN MN B2002 1555 1555 2.00 LINK O SER B 127 MN MN B2001 1555 1555 1.92 LINK OG SER B 127 MN MN B2002 1555 1555 2.06 LINK OD1 ASP B 130 MN MN B2001 1555 1555 1.83 LINK OD2 ASP B 130 MN MN B2001 1555 1555 2.66 LINK OD2 ASP B 131 MN MN B2001 1555 1555 1.81 LINK OE2 GLU B 162 MN MN B2003 1555 1555 1.85 LINK OD1 ASN B 218 MN MN B2003 1555 1555 2.49 LINK O ASP B 220 MN MN B2003 1555 1555 2.10 LINK OD1 ASP B 220 MN MN B2003 1555 1555 1.80 LINK O PRO B 222 MN MN B2003 1555 1555 1.88 LINK OE2 GLU B 223 MN MN B2002 1555 1555 1.79 LINK OD2 ASP B 254 MN MN B2001 1555 1555 1.82 LINK MN MN B2002 OD1 ASP C 12 1555 1555 1.82 CISPEP 1 SER B 166 PRO B 167 0 2.81 CISPEP 2 ILE B 183 PRO B 184 0 -12.78 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000