HEADER DNA BINDING PROTEIN 02-JUL-23 8TCM TITLE CRYSTAL STRUCTURE OF MODIFIED HIV REVERSE TRANSCRIPTASE P51 DOMAIN TITLE 2 (FPC1) WITH PICRIC ACID AND XANTHENE-1,3,6,8-TETROL BOUND COMPND MOL_ID: 1; COMPND 2 MOLECULE: P51 SUBUNIT; COMPND 3 CHAIN: B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HIV WHOLE-GENOME VECTOR AA1305#18; SOURCE 3 ORGANISM_TAXID: 672471; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS P51 SUBUNIT, HIV, AIDS, TRANSFERASE, XANTHENE-1, 3, 6, 8-TETROL, KEYWDS 2 PICRIC ACID, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR L.C.PEDERSEN,R.E.LONDON REVDAT 1 17-JUL-24 8TCM 0 JRNL AUTH L.C.PEDERSEN,R.E.LONDON JRNL TITL CRYSTAL STRUCTURE OF MODIFIED HIV REVERSE TRANSCRIPTASE P51 JRNL TITL 2 DOMAIN (FPC1) WITH PICRIC ACID AND XANTHENE BOUND JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.82 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.82 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 22.52 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 35970 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1801 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 22.5200 - 4.2700 1.00 2809 147 0.1917 0.2155 REMARK 3 2 4.2700 - 3.3900 1.00 2712 136 0.1687 0.1930 REMARK 3 3 3.3900 - 2.9600 0.99 2658 147 0.1992 0.2301 REMARK 3 4 2.9600 - 2.6900 0.99 2665 143 0.2086 0.2243 REMARK 3 5 2.6900 - 2.5000 1.00 2643 142 0.2075 0.2524 REMARK 3 6 2.5000 - 2.3500 1.00 2661 140 0.2149 0.2297 REMARK 3 7 2.3500 - 2.2400 1.00 2667 134 0.1910 0.2298 REMARK 3 8 2.2400 - 2.1400 1.00 2638 136 0.1787 0.2524 REMARK 3 9 2.1400 - 2.0600 1.00 2644 136 0.1779 0.1982 REMARK 3 10 2.0600 - 1.9900 1.00 2647 150 0.1921 0.2308 REMARK 3 11 1.9900 - 1.9200 1.00 2628 134 0.2156 0.2398 REMARK 3 12 1.9200 - 1.8700 0.98 2591 145 0.2334 0.2610 REMARK 3 13 1.8700 - 1.8200 0.84 2206 111 0.2716 0.3197 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.180 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.42 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.58 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 2701 REMARK 3 ANGLE : 1.206 3703 REMARK 3 CHIRALITY : 0.068 387 REMARK 3 PLANARITY : 0.010 470 REMARK 3 DIHEDRAL : 16.264 942 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'B' AND (RESID -1 THROUGH 83 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.0302 -3.3296 -24.1637 REMARK 3 T TENSOR REMARK 3 T11: 0.1718 T22: 0.1568 REMARK 3 T33: 0.2272 T12: -0.0275 REMARK 3 T13: -0.0233 T23: 0.0035 REMARK 3 L TENSOR REMARK 3 L11: 3.2658 L22: 2.2734 REMARK 3 L33: 2.8785 L12: -1.2176 REMARK 3 L13: -1.0839 L23: 0.7044 REMARK 3 S TENSOR REMARK 3 S11: 0.1301 S12: 0.0908 S13: 0.0337 REMARK 3 S21: -0.1130 S22: -0.0764 S23: -0.0233 REMARK 3 S31: 0.1041 S32: 0.0471 S33: -0.0397 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 84 THROUGH 238 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.1240 -10.9161 -15.2307 REMARK 3 T TENSOR REMARK 3 T11: 0.2103 T22: 0.2040 REMARK 3 T33: 0.1776 T12: 0.0090 REMARK 3 T13: -0.0241 T23: -0.0150 REMARK 3 L TENSOR REMARK 3 L11: 2.3190 L22: 0.8481 REMARK 3 L33: 0.9135 L12: 0.0198 REMARK 3 L13: -0.4543 L23: -0.2317 REMARK 3 S TENSOR REMARK 3 S11: -0.0336 S12: -0.0809 S13: -0.1139 REMARK 3 S21: 0.0378 S22: 0.0552 S23: 0.0370 REMARK 3 S31: 0.1305 S32: 0.0280 S33: -0.0059 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 239 THROUGH 416 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.4275 -27.3950 -15.2574 REMARK 3 T TENSOR REMARK 3 T11: 0.3508 T22: 0.3019 REMARK 3 T33: 0.3119 T12: 0.0827 REMARK 3 T13: 0.0253 T23: -0.0742 REMARK 3 L TENSOR REMARK 3 L11: 4.8197 L22: 4.0932 REMARK 3 L33: 5.5336 L12: -2.0989 REMARK 3 L13: -3.1018 L23: 1.6173 REMARK 3 S TENSOR REMARK 3 S11: -0.1725 S12: -0.3940 S13: 0.3165 REMARK 3 S21: -0.1142 S22: 0.4687 S23: -0.5107 REMARK 3 S31: 0.5528 S32: 0.5301 S33: -0.2881 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8TCM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-JUL-23. REMARK 100 THE DEPOSITION ID IS D_1000275675. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-DEC-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.514 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : VARIMAXHF REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36046 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.820 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 6.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.03800 REMARK 200 FOR THE DATA SET : 15.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.82 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 81.2 REMARK 200 DATA REDUNDANCY IN SHELL : 2.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.36000 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN: 25MG/ML, 10MM TRIS PH 7.4, REMARK 280 40MM NACL, 1MM TCEP, 0.25MM AZIDE, 10MM PICRIC ACID ML: 10% REMARK 280 PEG6000, .1M MES PH 6.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 38.65450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 49.70300 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 52.37350 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 38.65450 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 49.70300 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 52.37350 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 38.65450 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 49.70300 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 52.37350 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 38.65450 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 49.70300 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 52.37350 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 C1 TNF B 503 LIES ON A SPECIAL POSITION. REMARK 375 C4 TNF B 503 LIES ON A SPECIAL POSITION. REMARK 375 N4 TNF B 503 LIES ON A SPECIAL POSITION. REMARK 375 O1 TNF B 503 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER B -8 REMARK 465 ASP B -7 REMARK 465 HIS B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 LYS B 65 REMARK 465 LYS B 66 REMARK 465 ASP B 67 REMARK 465 SER B 68 REMARK 465 TRP B 88 REMARK 465 GLU B 89 REMARK 465 VAL B 90 REMARK 465 GLN B 91 REMARK 465 LEU B 92 REMARK 465 GLY B 93 REMARK 465 ILE B 94 REMARK 465 GLY B 313 REMARK 465 SER B 314 REMARK 465 GLY B 315 REMARK 465 SER B 316 REMARK 465 GLY B 317 REMARK 465 LYS B 323 REMARK 465 GLU B 344 REMARK 465 PRO B 345 REMARK 465 SER B 346 REMARK 465 LYS B 347 REMARK 465 VAL B 417 REMARK 465 ASN B 418 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 11 CE NZ REMARK 470 GLU B 28 CG CD OE1 OE2 REMARK 470 LYS B 30 CE NZ REMARK 470 LYS B 32 CD CE NZ REMARK 470 GLU B 36 CG CD OE1 OE2 REMARK 470 LYS B 64 CG CD CE NZ REMARK 470 THR B 69 OG1 CG2 REMARK 470 LYS B 70 CG CD CE NZ REMARK 470 ARG B 72 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 102 CD CE NZ REMARK 470 LYS B 104 CD CE NZ REMARK 470 GLN B 151 CD OE1 NE2 REMARK 470 GLN B 161 CD OE1 NE2 REMARK 470 LYS B 173 CG CD CE NZ REMARK 470 TYR B 232 CD1 CD2 CE1 CE2 CZ OH REMARK 470 THR B 240 OG1 CG2 REMARK 470 ASP B 320 CG OD1 OD2 REMARK 470 SER B 322 O REMARK 470 GLN B 330 OE1 NE2 REMARK 470 LYS B 331 CG CD CE NZ REMARK 470 GLN B 332 CG CD OE1 NE2 REMARK 470 GLN B 334 CG CD OE1 NE2 REMARK 470 LYS B 353 CE NZ REMARK 470 ARG B 358 CD NE CZ NH1 NH2 REMARK 470 LYS B 374 CD CE NZ REMARK 470 LYS B 385 CG CD CE NZ REMARK 470 LYS B 388 CG CD CE NZ REMARK 470 GLN B 394 CG CD OE1 NE2 REMARK 470 LYS B 395 CG CD CE NZ REMARK 470 GLU B 396 CG CD OE1 OE2 REMARK 470 GLU B 399 CG CD OE1 OE2 REMARK 470 GLU B 413 CG CD OE1 OE2 REMARK 470 GLU B 415 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O THR B 409 O HOH B 601 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN B 85 155.00 -48.83 REMARK 500 ASP B 121 121.72 -34.08 REMARK 500 MET B 184 -126.92 54.78 REMARK 500 GLN B 332 68.20 -113.00 REMARK 500 REMARK 500 REMARK: NULL DBREF 8TCM B -8 418 PDB 8TCM 8TCM -8 418 SEQRES 1 B 343 SER ASP HIS HIS HIS HIS HIS HIS GLY PRO ILE SER PRO SEQRES 2 B 343 ILE GLU THR VAL PRO VAL LYS LEU LYS PRO GLY MET ASP SEQRES 3 B 343 GLY PRO LYS VAL LYS GLN TRP PRO LEU THR GLU GLU LYS SEQRES 4 B 343 ILE LYS ALA LEU VAL GLU ILE CYS THR GLU MET GLU LYS SEQRES 5 B 343 GLU GLY LYS ILE SER LYS ILE GLY PRO GLU ASN PRO TYR SEQRES 6 B 343 ASN THR PRO VAL PHE ALA ILE LYS LYS LYS ASP SER THR SEQRES 7 B 343 LYS TRP ARG LYS LEU VAL ASP PHE ARG GLU LEU ASN LYS SEQRES 8 B 343 ARG THR GLN ASP PHE TRP GLU VAL GLN LEU GLY ILE PRO SEQRES 9 B 343 HIS PRO ALA GLY LEU LYS LYS LYS LYS SER VAL THR VAL SEQRES 10 B 343 LEU ASP VAL GLY ASP ALA TYR PHE SER VAL PRO LEU ASP SEQRES 11 B 343 GLU ASP PHE ARG LYS TYR THR ALA PHE THR ILE PRO SER SEQRES 12 B 343 ILE ASN ASN GLU THR PRO GLY ILE ARG TYR GLN TYR ASN SEQRES 13 B 343 VAL LEU PRO GLN GLY TRP LYS GLY SER PRO ALA ILE PHE SEQRES 14 B 343 GLN SER SER MET THR LYS ILE LEU GLU PRO PHE LYS LYS SEQRES 15 B 343 GLN ASN PRO ASP ILE VAL ILE TYR GLN TYR MET ASP ASP SEQRES 16 B 343 LEU TYR VAL GLY SER ASP LEU GLU ILE GLY GLN HIS ARG SEQRES 17 B 343 THR LYS ILE SER GLU LEU ARG GLN HIS LEU LEU ARG TRP SEQRES 18 B 343 GLY LEU THR THR PRO ASP GLY TYR GLU LEU HIS PRO ASP SEQRES 19 B 343 LYS TRP THR GLY SER GLY SER GLY GLY TYR ASP PRO SER SEQRES 20 B 343 LYS ASP LEU ILE ALA GLU ILE GLN LYS GLN GLY GLN GLY SEQRES 21 B 343 GLN TRP THR TYR GLN ILE TYR GLN GLU PRO SER LYS ASN SEQRES 22 B 343 LEU LYS THR GLY LYS TYR ALA ARG MET ARG GLY ALA HIS SEQRES 23 B 343 THR ASN ASP VAL LYS GLN LEU THR GLU ALA VAL GLN LYS SEQRES 24 B 343 ILE THR THR GLU SER ILE VAL ILE TRP GLY LYS THR PRO SEQRES 25 B 343 LYS PHE LYS LEU PRO ILE GLN LYS GLU THR TRP GLU THR SEQRES 26 B 343 TRP TRP THR GLU TYR TRP GLN ALA THR TRP ILE PRO GLU SEQRES 27 B 343 TRP GLU PHE VAL ASN HET TNF B 501 16 HET TNF B 502 16 HET TNF B 503 16 HET ZQT B 504 18 HET ZQT B 505 18 HETNAM TNF PICRIC ACID HETNAM ZQT 9H-XANTHENE-1,3,6,8-TETROL HETSYN TNF 2,4,6-TRINITROPHENOL FORMUL 2 TNF 3(C6 H3 N3 O7) FORMUL 5 ZQT 2(C13 H10 O5) FORMUL 7 HOH *194(H2 O) HELIX 1 AA1 SER B 3 THR B 7 5 5 HELIX 2 AA2 THR B 27 GLU B 44 1 18 HELIX 3 AA3 PHE B 77 THR B 84 1 8 HELIX 4 AA4 GLY B 99 LYS B 103 5 5 HELIX 5 AA5 GLY B 112 VAL B 118 5 7 HELIX 6 AA6 PHE B 124 ALA B 129 5 6 HELIX 7 AA7 SER B 134 GLU B 138 5 5 HELIX 8 AA8 LYS B 154 ASN B 175 1 22 HELIX 9 AA9 GLU B 194 TRP B 212 1 19 HELIX 10 AB1 HIS B 235 TRP B 239 5 5 HELIX 11 AB2 ASN B 363 GLY B 384 1 22 HELIX 12 AB3 GLN B 394 TRP B 406 1 13 SHEET 1 AA1 3 ILE B 47 LYS B 49 0 SHEET 2 AA1 3 ILE B 142 TYR B 146 -1 O GLN B 145 N SER B 48 SHEET 3 AA1 3 PHE B 130 ILE B 132 -1 N ILE B 132 O ILE B 142 SHEET 1 AA2 2 VAL B 60 ILE B 63 0 SHEET 2 AA2 2 ARG B 72 VAL B 75 -1 O ARG B 72 N ILE B 63 SHEET 1 AA3 4 VAL B 179 TYR B 183 0 SHEET 2 AA3 4 ASP B 186 SER B 191 -1 O GLY B 190 N VAL B 179 SHEET 3 AA3 4 SER B 105 ASP B 110 -1 N LEU B 109 O LEU B 187 SHEET 4 AA3 4 TYR B 232 LEU B 234 -1 O LEU B 234 N VAL B 106 SHEET 1 AA4 5 LYS B 350 ALA B 355 0 SHEET 2 AA4 5 GLN B 336 TYR B 342 -1 N TRP B 337 O TYR B 354 SHEET 3 AA4 5 ILE B 326 GLN B 332 -1 N GLU B 328 O GLN B 340 SHEET 4 AA4 5 LYS B 388 LYS B 390 1 O LYS B 388 N ALA B 327 SHEET 5 AA4 5 TRP B 414 GLU B 415 1 O GLU B 415 N PHE B 389 CRYST1 77.309 99.406 104.747 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012935 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010060 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009547 0.00000