HEADER TRANSFERASE 12-JUL-23 8TGP TITLE CRYSTAL STRUCTURE OF SIRT2 WITH FAM-PEG4-H4K16(MYRISTOYL) PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: NAD-DEPENDENT PROTEIN DEACETYLASE SIRTUIN-2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: NAD-DEPENDENT PROTEIN DEFATTY-ACYLASE SIRTUIN-2,REGULATORY COMPND 5 PROTEIN SIR2 HOMOLOG 2,SIR2-LIKE PROTEIN 2; COMPND 6 EC: 2.3.1.286,2.3.1.-; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: H4K16(MYRISTOYL) PEPTIDE; COMPND 10 CHAIN: B; COMPND 11 ENGINEERED: YES; COMPND 12 OTHER_DETAILS: KGLGKGGA(K-MYR)RHRK SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SIRT2, SIR2L, SIR2L2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606 KEYWDS SIRTUIN SIRTUIN-2 SIRT2, GENE REGULATION, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR N.I.NICELY,B.P.WEISER REVDAT 1 24-JAN-24 8TGP 0 JRNL AUTH J.YANG,N.I.NICELY,B.P.WEISER JRNL TITL EFFECTS OF DIMERIZATION ON THE DEACYLASE ACTIVITIES OF HUMAN JRNL TITL 2 SIRT2. JRNL REF BIOCHEMISTRY V. 62 3383 2023 JRNL REFN ISSN 0006-2960 JRNL PMID 37966275 JRNL DOI 10.1021/ACS.BIOCHEM.3C00381 REMARK 2 REMARK 2 RESOLUTION. 1.76 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.76 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.01 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 86.7 REMARK 3 NUMBER OF REFLECTIONS : 27073 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.390 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.0100 - 4.2300 0.95 2016 161 0.1673 0.2141 REMARK 3 2 4.2300 - 3.3600 0.95 1983 159 0.1819 0.2066 REMARK 3 3 3.3600 - 2.9300 0.95 1977 156 0.1981 0.2321 REMARK 3 4 2.9300 - 2.6700 0.98 2020 162 0.1956 0.2417 REMARK 3 5 2.6600 - 2.4700 0.99 2033 161 0.1912 0.2152 REMARK 3 6 2.4700 - 2.3300 0.99 2031 163 0.1843 0.2426 REMARK 3 7 2.3300 - 2.2100 0.98 2053 163 0.1856 0.2392 REMARK 3 8 2.2100 - 2.1200 0.96 1967 157 0.1941 0.2328 REMARK 3 9 2.1200 - 2.0300 0.96 1976 158 0.1975 0.2412 REMARK 3 10 2.0300 - 1.9600 0.95 1955 156 0.2006 0.2191 REMARK 3 11 1.9600 - 1.9000 0.80 1646 132 0.2137 0.2560 REMARK 3 12 1.9000 - 1.8500 0.70 1446 114 0.2270 0.3050 REMARK 3 13 1.8500 - 1.8000 0.55 1123 91 0.2462 0.3255 REMARK 3 14 1.8000 - 1.7600 0.41 847 67 0.2926 0.3550 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.193 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.243 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.46 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.58 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 2307 REMARK 3 ANGLE : 1.000 3102 REMARK 3 CHIRALITY : 0.064 336 REMARK 3 PLANARITY : 0.008 395 REMARK 3 DIHEDRAL : 10.652 316 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 57 THROUGH 91 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.5711 -14.5741 8.7770 REMARK 3 T TENSOR REMARK 3 T11: 0.1136 T22: 0.1346 REMARK 3 T33: 0.1888 T12: -0.0174 REMARK 3 T13: -0.0412 T23: 0.0521 REMARK 3 L TENSOR REMARK 3 L11: 2.8259 L22: 0.9779 REMARK 3 L33: 2.1762 L12: 0.2455 REMARK 3 L13: -0.2461 L23: 0.4173 REMARK 3 S TENSOR REMARK 3 S11: -0.1505 S12: -0.3144 S13: -0.1496 REMARK 3 S21: 0.2537 S22: -0.1464 S23: -0.3410 REMARK 3 S31: 0.1409 S32: 0.2873 S33: 0.2089 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 92 THROUGH 138 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.6757 -9.0784 -23.6799 REMARK 3 T TENSOR REMARK 3 T11: 0.3116 T22: 0.7346 REMARK 3 T33: 0.4262 T12: -0.1110 REMARK 3 T13: -0.0344 T23: -0.1271 REMARK 3 L TENSOR REMARK 3 L11: 0.1823 L22: 1.1165 REMARK 3 L33: 6.8080 L12: -0.4414 REMARK 3 L13: -0.1797 L23: 0.9951 REMARK 3 S TENSOR REMARK 3 S11: -0.0702 S12: 0.6712 S13: -0.5173 REMARK 3 S21: -0.2034 S22: -0.0047 S23: 0.5139 REMARK 3 S31: 0.6002 S32: -0.8770 S33: 0.0467 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 139 THROUGH 187 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.1972 -3.6426 -4.3350 REMARK 3 T TENSOR REMARK 3 T11: 0.1329 T22: 0.0742 REMARK 3 T33: 0.1511 T12: -0.0215 REMARK 3 T13: 0.0268 T23: 0.0298 REMARK 3 L TENSOR REMARK 3 L11: 1.7064 L22: 2.0516 REMARK 3 L33: 2.7946 L12: 0.0131 REMARK 3 L13: -0.4431 L23: 0.6376 REMARK 3 S TENSOR REMARK 3 S11: 0.0826 S12: 0.0855 S13: 0.0652 REMARK 3 S21: -0.3725 S22: -0.1759 S23: -0.3740 REMARK 3 S31: -0.2863 S32: 0.0014 S33: 0.0785 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 188 THROUGH 227 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.7277 1.7135 -27.0818 REMARK 3 T TENSOR REMARK 3 T11: 0.3540 T22: 0.2308 REMARK 3 T33: 0.1451 T12: 0.0260 REMARK 3 T13: -0.0015 T23: -0.0068 REMARK 3 L TENSOR REMARK 3 L11: 2.0334 L22: 2.6721 REMARK 3 L33: 7.9891 L12: 1.5109 REMARK 3 L13: -1.0285 L23: 0.0130 REMARK 3 S TENSOR REMARK 3 S11: -0.0257 S12: -0.1571 S13: 0.3506 REMARK 3 S21: 0.1178 S22: 0.0956 S23: 0.0792 REMARK 3 S31: -0.9992 S32: 0.0183 S33: -0.0587 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 228 THROUGH 275 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.6083 -16.5412 -9.8246 REMARK 3 T TENSOR REMARK 3 T11: 0.3075 T22: 0.1546 REMARK 3 T33: 0.2611 T12: 0.0017 REMARK 3 T13: 0.1017 T23: -0.0092 REMARK 3 L TENSOR REMARK 3 L11: 0.4545 L22: 1.3281 REMARK 3 L33: 1.8720 L12: 0.0434 REMARK 3 L13: -0.5466 L23: -1.3114 REMARK 3 S TENSOR REMARK 3 S11: -0.1415 S12: 0.1912 S13: -0.3228 REMARK 3 S21: -0.6250 S22: -0.2321 S23: -0.3205 REMARK 3 S31: 0.5565 S32: 0.0907 S33: 0.2439 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 276 THROUGH 323 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.6710 -23.9948 3.4235 REMARK 3 T TENSOR REMARK 3 T11: 0.1374 T22: 0.1062 REMARK 3 T33: 0.3146 T12: -0.1053 REMARK 3 T13: 0.0272 T23: 0.0518 REMARK 3 L TENSOR REMARK 3 L11: 1.9365 L22: 2.4907 REMARK 3 L33: 2.0695 L12: -0.2698 REMARK 3 L13: -0.0416 L23: -0.0874 REMARK 3 S TENSOR REMARK 3 S11: -0.0723 S12: -0.0013 S13: -0.4872 REMARK 3 S21: -0.1291 S22: -0.1324 S23: 0.1109 REMARK 3 S31: 0.5257 S32: -0.2725 S33: -0.0916 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 324 THROUGH 355 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.7791 1.9283 6.8816 REMARK 3 T TENSOR REMARK 3 T11: 0.0847 T22: 0.1087 REMARK 3 T33: 0.0869 T12: -0.0116 REMARK 3 T13: 0.0146 T23: -0.0343 REMARK 3 L TENSOR REMARK 3 L11: 1.7397 L22: 6.0262 REMARK 3 L33: 3.2297 L12: -0.4345 REMARK 3 L13: 0.3659 L23: -2.1544 REMARK 3 S TENSOR REMARK 3 S11: 0.0957 S12: -0.0591 S13: 0.1184 REMARK 3 S21: 0.3521 S22: -0.1157 S23: 0.0767 REMARK 3 S31: -0.2402 S32: -0.1054 S33: 0.0137 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 14 THROUGH 18 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.2743 -20.9336 -17.3973 REMARK 3 T TENSOR REMARK 3 T11: 0.9336 T22: 0.5177 REMARK 3 T33: 0.3468 T12: 0.0470 REMARK 3 T13: 0.0511 T23: -0.1769 REMARK 3 L TENSOR REMARK 3 L11: 2.6523 L22: 7.0938 REMARK 3 L33: 5.5375 L12: 2.9441 REMARK 3 L13: 2.0714 L23: -1.5731 REMARK 3 S TENSOR REMARK 3 S11: -0.1156 S12: 0.0731 S13: -0.2173 REMARK 3 S21: 0.5402 S22: 0.0686 S23: 0.2539 REMARK 3 S31: 0.5896 S32: -0.3032 S33: 0.0568 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8TGP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-JUL-23. REMARK 100 THE DEPOSITION ID IS D_1000275912. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JUN-21 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29902 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.760 REMARK 200 RESOLUTION RANGE LOW (A) : 45.010 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.03200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.76 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M MES MONOHYDRATE PH 6.5 (NAOH), REMARK 280 20% W/V PEG 4,000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 38.49750 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 34 REMARK 465 GLU A 35 REMARK 465 ALA A 36 REMARK 465 ASP A 37 REMARK 465 MET A 38 REMARK 465 ASP A 39 REMARK 465 PHE A 40 REMARK 465 LEU A 41 REMARK 465 ARG A 42 REMARK 465 ASN A 43 REMARK 465 LEU A 44 REMARK 465 PHE A 45 REMARK 465 SER A 46 REMARK 465 GLN A 47 REMARK 465 THR A 48 REMARK 465 LEU A 49 REMARK 465 SER A 50 REMARK 465 LEU A 51 REMARK 465 GLY A 52 REMARK 465 SER A 53 REMARK 465 GLN A 54 REMARK 465 LYS A 55 REMARK 465 GLU A 56 REMARK 465 SER A 98 REMARK 465 PRO A 99 REMARK 465 SER A 100 REMARK 465 THR A 101 REMARK 465 GLY A 102 REMARK 465 LEU A 103 REMARK 465 TYR A 104 REMARK 465 ASP A 105 REMARK 465 ASN A 106 REMARK 465 LEU A 107 REMARK 465 GLU A 108 REMARK 465 LYS A 109 REMARK 465 TYR A 110 REMARK 465 HIS A 111 REMARK 465 LEU A 112 REMARK 465 PRO A 113 REMARK 465 GLY A 298 REMARK 465 MET A 299 REMARK 465 ILE A 300 REMARK 465 MET A 301 REMARK 465 GLY A 302 REMARK 465 LEU A 303 REMARK 465 GLY A 304 REMARK 465 SER A 356 REMARK 465 LYS B 8 REMARK 465 GLY B 9 REMARK 465 LEU B 10 REMARK 465 GLY B 11 REMARK 465 LYS B 12 REMARK 465 GLY B 13 REMARK 465 ARG B 19 REMARK 465 LYS B 20 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PRO A 140 O HOH A 501 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 148 CB CYS A 148 SG -0.118 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 61 137.38 -171.01 REMARK 500 PHE A 96 42.68 -74.07 REMARK 500 CYS A 200 -67.94 -120.17 REMARK 500 ASP A 231 47.14 -78.73 REMARK 500 ARG A 316 -9.13 -149.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 195 SG REMARK 620 2 CYS A 200 SG 111.5 REMARK 620 3 CYS A 221 SG 110.4 110.4 REMARK 620 4 CYS A 224 SG 95.8 114.9 113.0 REMARK 620 N 1 2 3 DBREF 8TGP A 34 356 UNP Q8IXJ6 SIR2_HUMAN 34 356 DBREF 8TGP B 8 20 UNP P62805 H4_HUMAN 9 21 SEQRES 1 A 323 GLY GLU ALA ASP MET ASP PHE LEU ARG ASN LEU PHE SER SEQRES 2 A 323 GLN THR LEU SER LEU GLY SER GLN LYS GLU ARG LEU LEU SEQRES 3 A 323 ASP GLU LEU THR LEU GLU GLY VAL ALA ARG TYR MET GLN SEQRES 4 A 323 SER GLU ARG CYS ARG ARG VAL ILE CYS LEU VAL GLY ALA SEQRES 5 A 323 GLY ILE SER THR SER ALA GLY ILE PRO ASP PHE ARG SER SEQRES 6 A 323 PRO SER THR GLY LEU TYR ASP ASN LEU GLU LYS TYR HIS SEQRES 7 A 323 LEU PRO TYR PRO GLU ALA ILE PHE GLU ILE SER TYR PHE SEQRES 8 A 323 LYS LYS HIS PRO GLU PRO PHE PHE ALA LEU ALA LYS GLU SEQRES 9 A 323 LEU TYR PRO GLY GLN PHE LYS PRO THR ILE CYS HIS TYR SEQRES 10 A 323 PHE MET ARG LEU LEU LYS ASP LYS GLY LEU LEU LEU ARG SEQRES 11 A 323 CYS TYR THR GLN ASN ILE ASP THR LEU GLU ARG ILE ALA SEQRES 12 A 323 GLY LEU GLU GLN GLU ASP LEU VAL GLU ALA HIS GLY THR SEQRES 13 A 323 PHE TYR THR SER HIS CYS VAL SER ALA SER CYS ARG HIS SEQRES 14 A 323 GLU TYR PRO LEU SER TRP MET LYS GLU LYS ILE PHE SER SEQRES 15 A 323 GLU VAL THR PRO LYS CYS GLU ASP CYS GLN SER LEU VAL SEQRES 16 A 323 LYS PRO ASP ILE VAL PHE PHE GLY GLU SER LEU PRO ALA SEQRES 17 A 323 ARG PHE PHE SER CYS MET GLN SER ASP PHE LEU LYS VAL SEQRES 18 A 323 ASP LEU LEU LEU VAL MET GLY THR SER LEU GLN VAL GLN SEQRES 19 A 323 PRO PHE ALA SER LEU ILE SER LYS ALA PRO LEU SER THR SEQRES 20 A 323 PRO ARG LEU LEU ILE ASN LYS GLU LYS ALA GLY GLN SER SEQRES 21 A 323 ASP PRO PHE LEU GLY MET ILE MET GLY LEU GLY GLY GLY SEQRES 22 A 323 MET ASP PHE ASP SER LYS LYS ALA TYR ARG ASP VAL ALA SEQRES 23 A 323 TRP LEU GLY GLU CYS ASP GLN GLY CYS LEU ALA LEU ALA SEQRES 24 A 323 GLU LEU LEU GLY TRP LYS LYS GLU LEU GLU ASP LEU VAL SEQRES 25 A 323 ARG ARG GLU HIS ALA SER ILE ASP ALA GLN SER SEQRES 1 B 13 LYS GLY LEU GLY LYS GLY GLY ALA LYS ARG HIS ARG LYS HET ZN A 401 1 HET MYR B 101 15 HETNAM ZN ZINC ION HETNAM MYR MYRISTIC ACID FORMUL 3 ZN ZN 2+ FORMUL 4 MYR C14 H28 O2 FORMUL 5 HOH *78(H2 O) HELIX 1 AA1 THR A 63 GLN A 72 1 10 HELIX 2 AA2 ALA A 85 GLY A 92 5 8 HELIX 3 AA3 TYR A 114 PHE A 119 5 6 HELIX 4 AA4 GLU A 120 HIS A 127 1 8 HELIX 5 AA5 PRO A 128 TYR A 139 1 12 HELIX 6 AA6 THR A 146 LYS A 158 1 13 HELIX 7 AA7 THR A 171 ALA A 176 1 6 HELIX 8 AA8 GLU A 179 GLU A 181 5 3 HELIX 9 AA9 LEU A 206 SER A 215 1 10 HELIX 10 AB1 PRO A 240 PHE A 251 1 12 HELIX 11 AB2 PRO A 268 ALA A 276 5 9 HELIX 12 AB3 GLU A 323 GLY A 336 1 14 HELIX 13 AB4 TRP A 337 ALA A 354 1 18 SHEET 1 AA1 6 LEU A 183 GLU A 185 0 SHEET 2 AA1 6 LEU A 161 THR A 166 1 N CYS A 164 O VAL A 184 SHEET 3 AA1 6 VAL A 79 VAL A 83 1 N CYS A 81 O TYR A 165 SHEET 4 AA1 6 LEU A 256 MET A 260 1 O LEU A 258 N ILE A 80 SHEET 5 AA1 6 ARG A 282 ASN A 286 1 O LEU A 283 N VAL A 259 SHEET 6 AA1 6 ASP A 317 LEU A 321 1 O VAL A 318 N LEU A 284 SHEET 1 AA2 3 GLU A 203 PRO A 205 0 SHEET 2 AA2 3 GLY A 188 CYS A 195 -1 N SER A 193 O TYR A 204 SHEET 3 AA2 3 VAL A 228 ILE A 232 -1 O ASP A 231 N THR A 192 LINK NZ LYS B 16 C1 MYR B 101 1555 1555 1.49 LINK SG CYS A 195 ZN ZN A 401 1555 1555 2.31 LINK SG CYS A 200 ZN ZN A 401 1555 1555 2.30 LINK SG CYS A 221 ZN ZN A 401 1555 1555 2.30 LINK SG CYS A 224 ZN ZN A 401 1555 1555 2.29 CISPEP 1 GLN A 267 PRO A 268 0 1.14 CRYST1 37.138 76.995 56.005 90.00 97.89 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026927 0.000000 0.003732 0.00000 SCALE2 0.000000 0.012988 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018026 0.00000