HEADER HYDROLASE 14-JUL-23 8TH6 TITLE CRYSTAL STRUCTURE OF THE G3BP1 NTF2-LIKE DOMAIN BOUND TO USP10 PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN 1; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: G3BP-1,ATP-DEPENDENT DNA HELICASE VIII,HDH VIII,GAP SH3 COMPND 5 DOMAIN-BINDING PROTEIN 1; COMPND 6 EC: 3.6.4.12,3.6.4.13; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 10; COMPND 10 CHAIN: E, F, G, H; COMPND 11 SYNONYM: DEUBIQUITINATING ENZYME 10,UBIQUITIN THIOESTERASE 10, COMPND 12 UBIQUITIN-SPECIFIC-PROCESSING PROTEASE 10; COMPND 13 EC: 3.4.19.12; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: G3BP1, G3BP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: USP10, KIAA0190; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NTF2L USP10, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.P.HUGHES,J.P.TAYLOR,Z.YANG REVDAT 3 08-MAY-24 8TH6 1 AUTHOR REVDAT 2 10-APR-24 8TH6 1 JRNL REVDAT 1 20-MAR-24 8TH6 0 JRNL AUTH Z.YANG,B.A.JOHNSON,V.A.MELIOPOULOS,X.JU,P.ZHANG,M.P.HUGHES, JRNL AUTH 2 J.WU,K.P.KORESKI,J.E.CLARY,T.C.CHANG,G.WU,J.HIXON,J.DUFFNER, JRNL AUTH 3 K.WONG,R.LEMIEUX,K.G.LOKUGAMAGE,R.E.ALVARADO, JRNL AUTH 4 P.A.CROCQUET-VALDES,D.H.WALKER,K.S.PLANTE,J.A.PLANTE, JRNL AUTH 5 S.C.WEAVER,H.J.KIM,R.MEYERS,S.SCHULTZ-CHERRY,Q.DING, JRNL AUTH 6 V.D.MENACHERY,J.P.TAYLOR JRNL TITL INTERACTION BETWEEN HOST G3BP AND VIRAL NUCLEOCAPSID PROTEIN JRNL TITL 2 REGULATES SARS-COV-2 REPLICATION AND PATHOGENICITY. JRNL REF CELL REP V. 43 13965 2024 JRNL REFN ESSN 2211-1247 JRNL PMID 38492217 JRNL DOI 10.1016/J.CELREP.2024.113965 REMARK 2 REMARK 2 RESOLUTION. 2.34 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0349 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.34 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.20 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 63.1 REMARK 3 NUMBER OF REFLECTIONS : 15966 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.213 REMARK 3 FREE R VALUE : 0.295 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 817 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.34 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.40 REMARK 3 REFLECTION IN BIN (WORKING SET) : 97 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 5.18 REMARK 3 BIN R VALUE (WORKING SET) : 0.3100 REMARK 3 BIN FREE R VALUE SET COUNT : 2 REMARK 3 BIN FREE R VALUE : 0.1790 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4862 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 60 REMARK 3 SOLVENT ATOMS : 68 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.78 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.05000 REMARK 3 B33 (A**2) : -0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.05000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.458 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.281 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.879 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.918 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.839 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5041 ; 0.005 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 4358 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6785 ; 1.215 ; 1.644 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10115 ; 0.423 ; 1.550 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 594 ; 7.326 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 30 ;13.931 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 774 ;17.000 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 704 ; 0.055 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5786 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1106 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2403 ; 1.915 ; 2.870 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2403 ; 1.915 ; 2.870 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2988 ; 3.253 ; 4.288 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2989 ; 3.252 ; 4.289 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2638 ; 1.590 ; 2.929 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2639 ; 1.590 ; 2.929 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3798 ; 2.654 ; 4.345 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5287 ; 5.416 ;39.322 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 5286 ; 5.400 ;39.331 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8TH6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-JUL-23. REMARK 100 THE DEPOSITION ID IS D_1000275928. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-JUN-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL18U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97915 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : DIALS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15966 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.340 REMARK 200 RESOLUTION RANGE LOW (A) : 45.210 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 63.1 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.34 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.42 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.31 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH 7.5, 25% PEG3350, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 39.19000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7350 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14840 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D, E, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -34.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C, F, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 139 REMARK 465 MET C 1 REMARK 465 VAL C 2 REMARK 465 GLY C 43 REMARK 465 GLY C 44 REMARK 465 LEU C 45 REMARK 465 ASP C 46 REMARK 465 SER C 47 REMARK 465 ASN C 48 REMARK 465 GLY C 49 REMARK 465 LYS C 50 REMARK 465 PRO C 51 REMARK 465 ALA C 52 REMARK 465 GLY C 139 REMARK 465 MET D 1 REMARK 465 GLY D 44 REMARK 465 LEU D 45 REMARK 465 ASP D 46 REMARK 465 SER D 47 REMARK 465 ASN D 48 REMARK 465 GLY D 49 REMARK 465 LYS D 50 REMARK 465 PRO D 51 REMARK 465 ALA D 52 REMARK 465 GLY E 1 REMARK 465 ALA E 2 REMARK 465 LEU E 3 REMARK 465 HIS E 4 REMARK 465 SER E 5 REMARK 465 THR E 24 REMARK 465 GLY F 1 REMARK 465 ALA F 2 REMARK 465 LEU F 3 REMARK 465 HIS F 4 REMARK 465 SER F 5 REMARK 465 PRO F 6 REMARK 465 VAL F 23 REMARK 465 THR F 24 REMARK 465 GLY G 1 REMARK 465 ALA G 2 REMARK 465 LEU G 3 REMARK 465 HIS G 4 REMARK 465 SER G 5 REMARK 465 THR G 24 REMARK 465 GLY H 1 REMARK 465 ALA H 2 REMARK 465 LEU H 3 REMARK 465 HIS H 4 REMARK 465 SER H 5 REMARK 465 THR H 24 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 5 CG CD CE NZ REMARK 470 VAL A 120 CG1 CG2 REMARK 470 LYS B 59 CG CD CE NZ REMARK 470 ASN B 69 CG OD1 ND2 REMARK 470 ASN B 72 CG OD1 ND2 REMARK 470 SER B 119 OG REMARK 470 LYS C 5 CG CD CE NZ REMARK 470 LYS C 36 CG CD CE NZ REMARK 470 ARG C 63 CG CD NE CZ NH1 NH2 REMARK 470 LYS D 5 CG CD CE NZ REMARK 470 LYS D 36 CG CD CE NZ REMARK 470 ARG D 63 CG CD NE CZ NH1 NH2 REMARK 470 ASN D 72 CG OD1 ND2 REMARK 470 LYS D 76 CG CD CE NZ REMARK 470 ASP E 16 CG OD1 OD2 REMARK 470 ILE F 9 CG1 CG2 CD1 REMARK 470 ASP F 12 CG OD1 OD2 REMARK 470 ASP F 16 CG OD1 OD2 REMARK 470 ASN F 19 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 26 72.98 -158.16 REMARK 500 ASP A 46 -156.73 -91.37 REMARK 500 ASN A 72 65.01 34.19 REMARK 500 THR A 85 -158.29 -135.35 REMARK 500 SER A 119 -74.61 -81.14 REMARK 500 HIS B 42 62.95 -119.36 REMARK 500 ASN B 69 61.39 38.14 REMARK 500 ASN B 72 59.21 35.87 REMARK 500 HIS B 79 125.60 -170.57 REMARK 500 SER B 119 -89.29 -60.59 REMARK 500 GLN C 25 -12.13 -144.81 REMARK 500 ALA C 26 58.91 -172.40 REMARK 500 VAL C 137 -30.44 -133.52 REMARK 500 ALA D 26 78.48 -158.11 REMARK 500 ASN D 72 58.76 36.47 REMARK 500 THR D 85 -160.16 -127.26 REMARK 500 ASN D 101 35.54 76.80 REMARK 500 SER D 119 -85.91 -82.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 17 0.17 SIDE CHAIN REMARK 500 ARG A 63 0.07 SIDE CHAIN REMARK 500 ARG A 106 0.08 SIDE CHAIN REMARK 500 ARG B 17 0.10 SIDE CHAIN REMARK 500 ARG B 106 0.09 SIDE CHAIN REMARK 500 ARG C 107 0.11 SIDE CHAIN REMARK 500 ARG D 17 0.11 SIDE CHAIN REMARK 500 ARG D 106 0.17 SIDE CHAIN REMARK 500 ARG D 107 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 8TH6 A 1 139 UNP Q13283 G3BP1_HUMAN 1 139 DBREF 8TH6 B 1 139 UNP Q13283 G3BP1_HUMAN 1 139 DBREF 8TH6 C 1 139 UNP Q13283 G3BP1_HUMAN 1 139 DBREF 8TH6 D 1 139 UNP Q13283 G3BP1_HUMAN 1 139 DBREF 8TH6 E 2 24 UNP Q14694 UBP10_HUMAN 2 24 DBREF 8TH6 F 2 24 UNP Q14694 UBP10_HUMAN 2 24 DBREF 8TH6 G 2 24 UNP Q14694 UBP10_HUMAN 2 24 DBREF 8TH6 H 2 24 UNP Q14694 UBP10_HUMAN 2 24 SEQADV 8TH6 GLY E 1 UNP Q14694 EXPRESSION TAG SEQADV 8TH6 GLY F 1 UNP Q14694 EXPRESSION TAG SEQADV 8TH6 GLY G 1 UNP Q14694 EXPRESSION TAG SEQADV 8TH6 GLY H 1 UNP Q14694 EXPRESSION TAG SEQRES 1 A 139 MET VAL MET GLU LYS PRO SER PRO LEU LEU VAL GLY ARG SEQRES 2 A 139 GLU PHE VAL ARG GLN TYR TYR THR LEU LEU ASN GLN ALA SEQRES 3 A 139 PRO ASP MET LEU HIS ARG PHE TYR GLY LYS ASN SER SER SEQRES 4 A 139 TYR VAL HIS GLY GLY LEU ASP SER ASN GLY LYS PRO ALA SEQRES 5 A 139 ASP ALA VAL TYR GLY GLN LYS GLU ILE HIS ARG LYS VAL SEQRES 6 A 139 MET SER GLN ASN PHE THR ASN CYS HIS THR LYS ILE ARG SEQRES 7 A 139 HIS VAL ASP ALA HIS ALA THR LEU ASN ASP GLY VAL VAL SEQRES 8 A 139 VAL GLN VAL MET GLY LEU LEU SER ASN ASN ASN GLN ALA SEQRES 9 A 139 LEU ARG ARG PHE MET GLN THR PHE VAL LEU ALA PRO GLU SEQRES 10 A 139 GLY SER VAL ALA ASN LYS PHE TYR VAL HIS ASN ASP ILE SEQRES 11 A 139 PHE ARG TYR GLN ASP GLU VAL PHE GLY SEQRES 1 B 139 MET VAL MET GLU LYS PRO SER PRO LEU LEU VAL GLY ARG SEQRES 2 B 139 GLU PHE VAL ARG GLN TYR TYR THR LEU LEU ASN GLN ALA SEQRES 3 B 139 PRO ASP MET LEU HIS ARG PHE TYR GLY LYS ASN SER SER SEQRES 4 B 139 TYR VAL HIS GLY GLY LEU ASP SER ASN GLY LYS PRO ALA SEQRES 5 B 139 ASP ALA VAL TYR GLY GLN LYS GLU ILE HIS ARG LYS VAL SEQRES 6 B 139 MET SER GLN ASN PHE THR ASN CYS HIS THR LYS ILE ARG SEQRES 7 B 139 HIS VAL ASP ALA HIS ALA THR LEU ASN ASP GLY VAL VAL SEQRES 8 B 139 VAL GLN VAL MET GLY LEU LEU SER ASN ASN ASN GLN ALA SEQRES 9 B 139 LEU ARG ARG PHE MET GLN THR PHE VAL LEU ALA PRO GLU SEQRES 10 B 139 GLY SER VAL ALA ASN LYS PHE TYR VAL HIS ASN ASP ILE SEQRES 11 B 139 PHE ARG TYR GLN ASP GLU VAL PHE GLY SEQRES 1 C 139 MET VAL MET GLU LYS PRO SER PRO LEU LEU VAL GLY ARG SEQRES 2 C 139 GLU PHE VAL ARG GLN TYR TYR THR LEU LEU ASN GLN ALA SEQRES 3 C 139 PRO ASP MET LEU HIS ARG PHE TYR GLY LYS ASN SER SER SEQRES 4 C 139 TYR VAL HIS GLY GLY LEU ASP SER ASN GLY LYS PRO ALA SEQRES 5 C 139 ASP ALA VAL TYR GLY GLN LYS GLU ILE HIS ARG LYS VAL SEQRES 6 C 139 MET SER GLN ASN PHE THR ASN CYS HIS THR LYS ILE ARG SEQRES 7 C 139 HIS VAL ASP ALA HIS ALA THR LEU ASN ASP GLY VAL VAL SEQRES 8 C 139 VAL GLN VAL MET GLY LEU LEU SER ASN ASN ASN GLN ALA SEQRES 9 C 139 LEU ARG ARG PHE MET GLN THR PHE VAL LEU ALA PRO GLU SEQRES 10 C 139 GLY SER VAL ALA ASN LYS PHE TYR VAL HIS ASN ASP ILE SEQRES 11 C 139 PHE ARG TYR GLN ASP GLU VAL PHE GLY SEQRES 1 D 139 MET VAL MET GLU LYS PRO SER PRO LEU LEU VAL GLY ARG SEQRES 2 D 139 GLU PHE VAL ARG GLN TYR TYR THR LEU LEU ASN GLN ALA SEQRES 3 D 139 PRO ASP MET LEU HIS ARG PHE TYR GLY LYS ASN SER SER SEQRES 4 D 139 TYR VAL HIS GLY GLY LEU ASP SER ASN GLY LYS PRO ALA SEQRES 5 D 139 ASP ALA VAL TYR GLY GLN LYS GLU ILE HIS ARG LYS VAL SEQRES 6 D 139 MET SER GLN ASN PHE THR ASN CYS HIS THR LYS ILE ARG SEQRES 7 D 139 HIS VAL ASP ALA HIS ALA THR LEU ASN ASP GLY VAL VAL SEQRES 8 D 139 VAL GLN VAL MET GLY LEU LEU SER ASN ASN ASN GLN ALA SEQRES 9 D 139 LEU ARG ARG PHE MET GLN THR PHE VAL LEU ALA PRO GLU SEQRES 10 D 139 GLY SER VAL ALA ASN LYS PHE TYR VAL HIS ASN ASP ILE SEQRES 11 D 139 PHE ARG TYR GLN ASP GLU VAL PHE GLY SEQRES 1 E 24 GLY ALA LEU HIS SER PRO GLN TYR ILE PHE GLY ASP PHE SEQRES 2 E 24 SER PRO ASP GLU PHE ASN GLN PHE PHE VAL THR SEQRES 1 F 24 GLY ALA LEU HIS SER PRO GLN TYR ILE PHE GLY ASP PHE SEQRES 2 F 24 SER PRO ASP GLU PHE ASN GLN PHE PHE VAL THR SEQRES 1 G 24 GLY ALA LEU HIS SER PRO GLN TYR ILE PHE GLY ASP PHE SEQRES 2 G 24 SER PRO ASP GLU PHE ASN GLN PHE PHE VAL THR SEQRES 1 H 24 GLY ALA LEU HIS SER PRO GLN TYR ILE PHE GLY ASP PHE SEQRES 2 H 24 SER PRO ASP GLU PHE ASN GLN PHE PHE VAL THR HET EDO A 201 4 HET EDO A 202 4 HET EDO A 203 4 HET EDO A 204 4 HET EDO A 205 4 HET EDO A 206 4 HET EDO B 201 4 HET EDO B 202 4 HET EDO B 203 4 HET EDO C 201 4 HET EDO D 201 4 HET EDO D 202 4 HET EDO D 203 4 HET EDO D 204 4 HET EDO H 101 4 HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 9 EDO 15(C2 H6 O2) FORMUL 24 HOH *68(H2 O) HELIX 1 AA1 SER A 7 ALA A 26 1 20 HELIX 2 AA2 PRO A 27 ARG A 32 5 6 HELIX 3 AA3 GLY A 57 GLN A 68 1 12 HELIX 4 AA4 LEU A 86 ASP A 88 5 3 HELIX 5 AA5 SER B 7 ALA B 26 1 20 HELIX 6 AA6 PRO B 27 ARG B 32 5 6 HELIX 7 AA7 GLY B 57 SER B 67 1 11 HELIX 8 AA8 LEU B 86 ASP B 88 5 3 HELIX 9 AA9 GLN B 134 GLY B 139 1 6 HELIX 10 AB1 SER C 7 ASN C 24 1 18 HELIX 11 AB2 ALA C 26 ARG C 32 5 7 HELIX 12 AB3 GLY C 57 GLN C 68 1 12 HELIX 13 AB4 LEU C 86 ASP C 88 5 3 HELIX 14 AB5 ASP C 135 VAL C 137 5 3 HELIX 15 AB6 SER D 7 ALA D 26 1 20 HELIX 16 AB7 PRO D 27 ARG D 32 5 6 HELIX 17 AB8 GLY D 57 GLN D 68 1 12 HELIX 18 AB9 LEU D 86 ASP D 88 5 3 HELIX 19 AC1 SER E 14 PHE E 22 1 9 HELIX 20 AC2 SER F 14 PHE F 22 1 9 HELIX 21 AC3 SER G 14 PHE G 22 1 9 HELIX 22 AC4 SER H 14 PHE H 22 1 9 SHEET 1 AA1 6 VAL A 55 TYR A 56 0 SHEET 2 AA1 6 TYR A 34 HIS A 42 -1 N TYR A 40 O VAL A 55 SHEET 3 AA1 6 PHE A 124 TYR A 133 1 O HIS A 127 N SER A 39 SHEET 4 AA1 6 ARG A 106 PRO A 116 -1 N THR A 111 O ILE A 130 SHEET 5 AA1 6 GLY A 89 SER A 99 -1 N VAL A 94 O GLN A 110 SHEET 6 AA1 6 HIS A 74 THR A 85 -1 N ASP A 81 O GLN A 93 SHEET 1 AA2 6 VAL B 55 TYR B 56 0 SHEET 2 AA2 6 TYR B 34 HIS B 42 -1 N TYR B 40 O VAL B 55 SHEET 3 AA2 6 LYS B 123 TYR B 133 1 O PHE B 131 N VAL B 41 SHEET 4 AA2 6 ARG B 106 PRO B 116 -1 N MET B 109 O ARG B 132 SHEET 5 AA2 6 GLY B 89 SER B 99 -1 N VAL B 94 O GLN B 110 SHEET 6 AA2 6 HIS B 74 THR B 85 -1 N ASP B 81 O GLN B 93 SHEET 1 AA3 4 VAL B 55 TYR B 56 0 SHEET 2 AA3 4 TYR B 34 HIS B 42 -1 N TYR B 40 O VAL B 55 SHEET 3 AA3 4 LYS B 123 TYR B 133 1 O PHE B 131 N VAL B 41 SHEET 4 AA3 4 ILE G 9 PHE G 10 1 O ILE G 9 N PHE B 124 SHEET 1 AA4 6 VAL C 55 TYR C 56 0 SHEET 2 AA4 6 TYR C 34 VAL C 41 -1 N TYR C 40 O VAL C 55 SHEET 3 AA4 6 LYS C 123 TYR C 133 1 O ASP C 129 N VAL C 41 SHEET 4 AA4 6 ARG C 106 PRO C 116 -1 N THR C 111 O ILE C 130 SHEET 5 AA4 6 GLY C 89 SER C 99 -1 N VAL C 92 O PHE C 112 SHEET 6 AA4 6 HIS C 74 THR C 85 -1 N THR C 85 O GLY C 89 SHEET 1 AA5 4 VAL C 55 TYR C 56 0 SHEET 2 AA5 4 TYR C 34 VAL C 41 -1 N TYR C 40 O VAL C 55 SHEET 3 AA5 4 LYS C 123 TYR C 133 1 O ASP C 129 N VAL C 41 SHEET 4 AA5 4 ILE F 9 PHE F 10 1 O ILE F 9 N PHE C 124 SHEET 1 AA6 6 VAL D 55 TYR D 56 0 SHEET 2 AA6 6 TYR D 34 VAL D 41 -1 N TYR D 40 O VAL D 55 SHEET 3 AA6 6 LYS D 123 TYR D 133 1 O ASP D 129 N VAL D 41 SHEET 4 AA6 6 ARG D 106 PRO D 116 -1 N THR D 111 O ILE D 130 SHEET 5 AA6 6 VAL D 90 ASN D 100 -1 N VAL D 94 O GLN D 110 SHEET 6 AA6 6 CYS D 73 ALA D 84 -1 N ARG D 78 O MET D 95 SHEET 1 AA7 4 VAL D 55 TYR D 56 0 SHEET 2 AA7 4 TYR D 34 VAL D 41 -1 N TYR D 40 O VAL D 55 SHEET 3 AA7 4 LYS D 123 TYR D 133 1 O ASP D 129 N VAL D 41 SHEET 4 AA7 4 ILE E 9 PHE E 10 1 O ILE E 9 N PHE D 124 CRYST1 58.390 78.380 73.410 90.00 108.63 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017126 0.000000 0.005773 0.00000 SCALE2 0.000000 0.012758 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014375 0.00000