HEADER TRANSCRIPTION 14-JUL-23 8THA TITLE 1TEL, NON-COMPRESSED, DOUBLE-HELICAL CRYSTAL FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTION FACTOR ETV6,ACTIVATED CDC42 KINASE 1; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ETV6, TNK2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: B; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET42_SUMO KEYWDS PROTEIN CRYSTALLIZATION CHAPERONE, POLYMER-FORMING, TELSAM, ETV6, KEYWDS 2 TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR C.P.SMITH,E.W.WILSON,M.J.PEDROZA ROMO,J.C.AVERETT,J.D.MOODY REVDAT 1 23-AUG-23 8THA 0 JRNL AUTH C.P.SMITH,E.W.WILSON,M.J.PEDROZA ROMO,J.C.AVERETT,J.D.MOODY JRNL TITL 1TEL, NON-COMPRESSED, DOUBLE-HELICAL CRYSTAL FORM JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.68 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.68 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.95 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 93.9 REMARK 3 NUMBER OF REFLECTIONS : 8707 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.230 REMARK 3 FREE R VALUE TEST SET COUNT : 455 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.9500 - 2.4200 0.92 2770 134 0.1649 0.1945 REMARK 3 2 2.4200 - 1.9200 1.00 2907 168 0.1977 0.2317 REMARK 3 3 1.7400 - 1.6800 0.89 2611 153 0.2633 0.2858 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.202 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.405 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.64 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.49 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 665 REMARK 3 ANGLE : 1.124 904 REMARK 3 CHIRALITY : 0.059 95 REMARK 3 PLANARITY : 0.010 115 REMARK 3 DIHEDRAL : 12.679 240 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 4 THROUGH 9 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.3759 23.6818 3.0604 REMARK 3 T TENSOR REMARK 3 T11: 0.6313 T22: 0.3670 REMARK 3 T33: 0.8025 T12: -0.1499 REMARK 3 T13: -0.2242 T23: -0.1250 REMARK 3 L TENSOR REMARK 3 L11: 7.5765 L22: 4.4206 REMARK 3 L33: 3.2319 L12: 4.4396 REMARK 3 L13: -2.8588 L23: 0.3040 REMARK 3 S TENSOR REMARK 3 S11: 0.1444 S12: -0.9296 S13: 0.2631 REMARK 3 S21: 0.6430 S22: -0.1561 S23: -1.7048 REMARK 3 S31: -0.1424 S32: 0.1533 S33: 0.0118 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 10 THROUGH 45 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.4707 17.6720 -3.0164 REMARK 3 T TENSOR REMARK 3 T11: 0.1949 T22: 0.1454 REMARK 3 T33: 0.1438 T12: -0.0138 REMARK 3 T13: 0.0526 T23: 0.0016 REMARK 3 L TENSOR REMARK 3 L11: 7.0179 L22: 3.9821 REMARK 3 L33: 1.6103 L12: -3.2518 REMARK 3 L13: 1.9294 L23: -2.4980 REMARK 3 S TENSOR REMARK 3 S11: 0.1025 S12: 0.3291 S13: 0.3424 REMARK 3 S21: -0.1956 S22: -0.1448 S23: -0.2487 REMARK 3 S31: 0.0662 S32: 0.1609 S33: 0.0021 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 46 THROUGH 80 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.7829 12.1374 1.5764 REMARK 3 T TENSOR REMARK 3 T11: 0.1155 T22: 0.1080 REMARK 3 T33: 0.1208 T12: -0.0214 REMARK 3 T13: 0.0351 T23: 0.0056 REMARK 3 L TENSOR REMARK 3 L11: 5.8411 L22: 4.3047 REMARK 3 L33: 4.8584 L12: -1.7254 REMARK 3 L13: 0.0344 L23: -0.1102 REMARK 3 S TENSOR REMARK 3 S11: 0.0742 S12: -0.0077 S13: -0.1255 REMARK 3 S21: 0.0512 S22: 0.0182 S23: 0.1271 REMARK 3 S31: 0.0507 S32: 0.0120 S33: -0.0786 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8THA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-JUL-23. REMARK 100 THE DEPOSITION ID IS D_1000275809. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-OCT-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979460 REMARK 200 MONOCHROMATOR : SI(111) AND SI(220) DOUBLE REMARK 200 CRYSTAL REMARK 200 OPTICS : MIRROR: RH COATED FLAT BENT M0, REMARK 200 TOROIDAL FOCUSING POST- REMARK 200 MONOCHROMATOR M1 REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC REMARK 200 DATA SCALING SOFTWARE : AUTOPROC REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8707 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.680 REMARK 200 RESOLUTION RANGE LOW (A) : 29.950 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.8 REMARK 200 DATA REDUNDANCY : 17.10 REMARK 200 R MERGE (I) : 0.07972 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.7400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.68 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.74 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.52100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.010 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NARROW RODS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.5 M BIS-TRIS, 0.35 M MG-FORMATE, 5 REMARK 280 MG/ML PROTEIN, PH 7.0, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 9.71033 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 19.42067 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 9.71033 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 19.42067 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 2 REMARK 465 ILE A 3 REMARK 465 ALA A 81 REMARK 465 GLY A 82 REMARK 465 ARG A 83 REMARK 465 PRO A 84 REMARK 465 ALA A 85 REMARK 465 ASP A 86 REMARK 465 LYS A 87 REMARK 465 ILE A 88 REMARK 465 GLN A 89 REMARK 465 MET A 90 REMARK 465 ALA A 91 REMARK 465 MET A 92 REMARK 465 VAL A 93 REMARK 465 HIS A 94 REMARK 465 GLY A 95 REMARK 465 VAL A 96 REMARK 465 THR A 97 REMARK 465 THR A 98 REMARK 465 GLU A 99 REMARK 465 GLU A 100 REMARK 465 CYS A 101 REMARK 465 GLN A 102 REMARK 465 ALA A 103 REMARK 465 ALA A 104 REMARK 465 LEU A 105 REMARK 465 GLN A 106 REMARK 465 CYS A 107 REMARK 465 HIS A 108 REMARK 465 GLY A 109 REMARK 465 TRP A 110 REMARK 465 SER A 111 REMARK 465 VAL A 112 REMARK 465 GLN A 113 REMARK 465 ARG A 114 REMARK 465 ALA A 115 REMARK 465 ALA A 116 REMARK 465 GLN A 117 REMARK 465 TYR A 118 REMARK 465 LEU A 119 REMARK 465 LYS A 120 REMARK 465 VAL A 121 REMARK 465 GLU A 122 REMARK 465 GLN A 123 REMARK 465 LEU A 124 REMARK 465 PHE A 125 REMARK 465 GLY A 126 REMARK 465 LEU A 127 REMARK 465 GLY A 128 REMARK 465 LEU A 129 REMARK 465 ARG A 130 REMARK 465 PRO A 131 REMARK 465 ARG A 132 REMARK 465 GLY A 133 REMARK 465 GLU A 134 REMARK 465 CYS A 135 REMARK 465 HIS A 136 REMARK 465 LYS A 137 REMARK 465 VAL A 138 REMARK 465 LEU A 139 REMARK 465 GLU A 140 REMARK 465 MET A 141 REMARK 465 PHE A 142 REMARK 465 ASP A 143 REMARK 465 TRP A 144 REMARK 465 ASN A 145 REMARK 465 LEU A 146 REMARK 465 GLU A 147 REMARK 465 GLN A 148 REMARK 465 ALA A 149 REMARK 465 GLY A 150 REMARK 465 CYS A 151 REMARK 465 HIS A 152 REMARK 465 LEU A 153 REMARK 465 LEU A 154 REMARK 465 GLY A 155 REMARK 465 SER A 156 REMARK 465 TRP A 157 REMARK 465 GLY A 158 REMARK 465 PRO A 159 REMARK 465 ALA A 160 REMARK 465 HIS A 161 REMARK 465 HIS A 162 REMARK 465 LYS A 163 REMARK 465 ARG A 164 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 4 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 12 OE1 NE2 REMARK 470 GLN A 23 CD OE1 NE2 REMARK 470 ILE A 37 CG1 CG2 CD1 REMARK 470 GLU A 55 CD OE1 OE2 REMARK 470 GLN A 78 CD OE1 NE2 REMARK 470 ARG A 79 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 80 CG CD OE1 OE2 DBREF 8THA A 2 79 UNP P41212 ETV6_HUMAN 47 124 DBREF 8THA A 80 164 UNP Q07912 ACK1_HUMAN 954 1038 SEQADV 8THA SER A 35 UNP P41212 ARG 80 ENGINEERED MUTATION SEQADV 8THA GLU A 67 UNP P41212 VAL 112 ENGINEERED MUTATION SEQRES 1 A 163 SER ILE ARG LEU PRO ALA HIS LEU ARG LEU GLN PRO ILE SEQRES 2 A 163 TYR TRP SER ARG ASP ASP VAL ALA GLN TRP LEU LYS TRP SEQRES 3 A 163 ALA GLU ASN GLU PHE SER LEU SER PRO ILE ASP SER ASN SEQRES 4 A 163 THR PHE GLU MET ASN GLY LYS ALA LEU LEU LEU LEU THR SEQRES 5 A 163 LYS GLU ASP PHE ARG TYR ARG SER PRO HIS SER GLY ASP SEQRES 6 A 163 GLU LEU TYR GLU LEU LEU GLN HIS ILE LEU LYS GLN ARG SEQRES 7 A 163 GLU ALA GLY ARG PRO ALA ASP LYS ILE GLN MET ALA MET SEQRES 8 A 163 VAL HIS GLY VAL THR THR GLU GLU CYS GLN ALA ALA LEU SEQRES 9 A 163 GLN CYS HIS GLY TRP SER VAL GLN ARG ALA ALA GLN TYR SEQRES 10 A 163 LEU LYS VAL GLU GLN LEU PHE GLY LEU GLY LEU ARG PRO SEQRES 11 A 163 ARG GLY GLU CYS HIS LYS VAL LEU GLU MET PHE ASP TRP SEQRES 12 A 163 ASN LEU GLU GLN ALA GLY CYS HIS LEU LEU GLY SER TRP SEQRES 13 A 163 GLY PRO ALA HIS HIS LYS ARG FORMUL 2 HOH *65(H2 O) HELIX 1 AA1 PRO A 6 ARG A 10 5 5 HELIX 2 AA2 GLN A 12 TRP A 16 5 5 HELIX 3 AA3 SER A 17 SER A 33 1 17 HELIX 4 AA4 ASN A 45 LEU A 50 1 6 HELIX 5 AA5 THR A 53 SER A 61 1 9 HELIX 6 AA6 SER A 64 LYS A 77 1 14 CRYST1 69.163 69.163 29.131 90.00 90.00 120.00 P 64 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014459 0.008348 0.000000 0.00000 SCALE2 0.000000 0.016695 0.000000 0.00000 SCALE3 0.000000 0.000000 0.034328 0.00000