data_8THQ # _entry.id 8THQ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.397 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8THQ pdb_00008thq 10.2210/pdb8thq/pdb WWPDB D_1000275956 ? ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2024-10-16 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8THQ _pdbx_database_status.recvd_initial_deposition_date 2023-07-17 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_contact_author.id 2 _pdbx_contact_author.email martin.egli@vanderbilt.edu _pdbx_contact_author.name_first Martin _pdbx_contact_author.name_last Egli _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0003-4145-356X # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Pallan, P.S.' 1 0000-0001-7449-7273 'Harp, J.M.' 2 ? 'Egli, M.' 3 0000-0003-4145-356X # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev J.Am.Chem.Soc. _citation.journal_id_ASTM JACSAT _citation.journal_id_CSD ? _citation.journal_id_ISSN 1520-5126 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Single-Stranded Hairpin Loop RNAs (loopmeRNAs) Potently Induce Gene Silencing through the RNA Interference Pathway.' _citation.year 2024 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1021/jacs.4c07902 _citation.pdbx_database_id_PubMed 39373383 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Aluri, K.C.' 1 ? primary 'Datta, D.' 2 ? primary 'Waldron, S.' 3 ? primary 'Taneja, N.' 4 ? primary 'Qin, J.' 5 ? primary 'Donnelly, D.P.' 6 ? primary 'Theile, C.S.' 7 ? primary 'Guenther, D.C.' 8 ? primary 'Lei, L.' 9 ? primary 'Harp, J.M.' 10 ? primary 'Pallan, P.S.' 11 ? primary 'Egli, M.' 12 0000-0003-4145-356X primary 'Zlatev, I.' 13 0000-0003-2797-3032 primary 'Manoharan, M.' 14 0000-0002-7931-1172 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Protein argonaute-2' 14767.108 2 3.1.26.- ? 'PAZ domain' ? 2 polymer syn ;RNA (5'-R(*CP*GP*UP*GP*AP*CP*UP*CP*U)-3') ; 2808.703 2 ? ? ? ? 3 water nat water 18.015 16 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name ;Argonaute2,hAgo2,Argonaute RISC catalytic component 2,Eukaryotic translation initiation factor 2C 2,eIF-2C 2,eIF2C 2,PAZ Piwi domain protein,PPD,Protein slicer ; # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;SAQPVIEFVCEVLDFKSIEEQQKPLTDSQRVKFTKEIKGLKVEITHCGQMKRKYRVCNVTRRPASHQTFPLQQESGQTVE CTVAQYFKDRHKLVLRYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRC ; ;SAQPVIEFVCEVLDFKSIEEQQKPLTDSQRVKFTKEIKGLKVEITHCGQMKRKYRVCNVTRRPASHQTFPLQQESGQTVE CTVAQYFKDRHKLVLRYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRC ; A,B ? 2 polyribonucleotide no no CGUGACUCU CGUGACUCU R,S ? # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 ALA n 1 3 GLN n 1 4 PRO n 1 5 VAL n 1 6 ILE n 1 7 GLU n 1 8 PHE n 1 9 VAL n 1 10 CYS n 1 11 GLU n 1 12 VAL n 1 13 LEU n 1 14 ASP n 1 15 PHE n 1 16 LYS n 1 17 SER n 1 18 ILE n 1 19 GLU n 1 20 GLU n 1 21 GLN n 1 22 GLN n 1 23 LYS n 1 24 PRO n 1 25 LEU n 1 26 THR n 1 27 ASP n 1 28 SER n 1 29 GLN n 1 30 ARG n 1 31 VAL n 1 32 LYS n 1 33 PHE n 1 34 THR n 1 35 LYS n 1 36 GLU n 1 37 ILE n 1 38 LYS n 1 39 GLY n 1 40 LEU n 1 41 LYS n 1 42 VAL n 1 43 GLU n 1 44 ILE n 1 45 THR n 1 46 HIS n 1 47 CYS n 1 48 GLY n 1 49 GLN n 1 50 MET n 1 51 LYS n 1 52 ARG n 1 53 LYS n 1 54 TYR n 1 55 ARG n 1 56 VAL n 1 57 CYS n 1 58 ASN n 1 59 VAL n 1 60 THR n 1 61 ARG n 1 62 ARG n 1 63 PRO n 1 64 ALA n 1 65 SER n 1 66 HIS n 1 67 GLN n 1 68 THR n 1 69 PHE n 1 70 PRO n 1 71 LEU n 1 72 GLN n 1 73 GLN n 1 74 GLU n 1 75 SER n 1 76 GLY n 1 77 GLN n 1 78 THR n 1 79 VAL n 1 80 GLU n 1 81 CYS n 1 82 THR n 1 83 VAL n 1 84 ALA n 1 85 GLN n 1 86 TYR n 1 87 PHE n 1 88 LYS n 1 89 ASP n 1 90 ARG n 1 91 HIS n 1 92 LYS n 1 93 LEU n 1 94 VAL n 1 95 LEU n 1 96 ARG n 1 97 TYR n 1 98 PRO n 1 99 HIS n 1 100 LEU n 1 101 PRO n 1 102 CYS n 1 103 LEU n 1 104 GLN n 1 105 VAL n 1 106 GLY n 1 107 GLN n 1 108 GLU n 1 109 GLN n 1 110 LYS n 1 111 HIS n 1 112 THR n 1 113 TYR n 1 114 LEU n 1 115 PRO n 1 116 LEU n 1 117 GLU n 1 118 VAL n 1 119 CYS n 1 120 ASN n 1 121 ILE n 1 122 VAL n 1 123 ALA n 1 124 GLY n 1 125 GLN n 1 126 ARG n 1 127 CYS n 2 1 C n 2 2 G n 2 3 U n 2 4 G n 2 5 A n 2 6 C n 2 7 U n 2 8 C n 2 9 U n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 127 _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'AGO2, EIF2C2' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 9 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 226 226 SER SER A . n A 1 2 ALA 2 227 227 ALA ALA A . n A 1 3 GLN 3 228 228 GLN GLN A . n A 1 4 PRO 4 229 229 PRO PRO A . n A 1 5 VAL 5 230 230 VAL VAL A . n A 1 6 ILE 6 231 231 ILE ILE A . n A 1 7 GLU 7 232 232 GLU GLU A . n A 1 8 PHE 8 233 233 PHE PHE A . n A 1 9 VAL 9 234 234 VAL VAL A . n A 1 10 CYS 10 235 235 CYS CYS A . n A 1 11 GLU 11 236 236 GLU GLU A . n A 1 12 VAL 12 237 237 VAL VAL A . n A 1 13 LEU 13 238 238 LEU LEU A . n A 1 14 ASP 14 239 239 ASP ASP A . n A 1 15 PHE 15 240 240 PHE PHE A . n A 1 16 LYS 16 241 241 LYS LYS A . n A 1 17 SER 17 242 242 SER SER A . n A 1 18 ILE 18 243 243 ILE ILE A . n A 1 19 GLU 19 244 244 GLU GLU A . n A 1 20 GLU 20 245 245 GLU GLU A . n A 1 21 GLN 21 246 246 GLN GLN A . n A 1 22 GLN 22 247 247 GLN GLN A . n A 1 23 LYS 23 248 248 LYS LYS A . n A 1 24 PRO 24 249 249 PRO PRO A . n A 1 25 LEU 25 250 250 LEU LEU A . n A 1 26 THR 26 251 251 THR THR A . n A 1 27 ASP 27 252 252 ASP ASP A . n A 1 28 SER 28 253 253 SER SER A . n A 1 29 GLN 29 254 254 GLN GLN A . n A 1 30 ARG 30 255 255 ARG ARG A . n A 1 31 VAL 31 256 256 VAL VAL A . n A 1 32 LYS 32 257 257 LYS LYS A . n A 1 33 PHE 33 258 258 PHE PHE A . n A 1 34 THR 34 259 259 THR THR A . n A 1 35 LYS 35 260 260 LYS LYS A . n A 1 36 GLU 36 261 261 GLU GLU A . n A 1 37 ILE 37 262 262 ILE ILE A . n A 1 38 LYS 38 263 263 LYS LYS A . n A 1 39 GLY 39 264 264 GLY GLY A . n A 1 40 LEU 40 265 265 LEU LEU A . n A 1 41 LYS 41 266 266 LYS LYS A . n A 1 42 VAL 42 267 267 VAL VAL A . n A 1 43 GLU 43 268 268 GLU GLU A . n A 1 44 ILE 44 269 269 ILE ILE A . n A 1 45 THR 45 270 270 THR THR A . n A 1 46 HIS 46 271 271 HIS HIS A . n A 1 47 CYS 47 272 272 CYS CYS A . n A 1 48 GLY 48 273 273 GLY GLY A . n A 1 49 GLN 49 274 274 GLN GLN A . n A 1 50 MET 50 275 275 MET MET A . n A 1 51 LYS 51 276 276 LYS LYS A . n A 1 52 ARG 52 277 277 ARG ARG A . n A 1 53 LYS 53 278 278 LYS LYS A . n A 1 54 TYR 54 279 279 TYR TYR A . n A 1 55 ARG 55 280 280 ARG ARG A . n A 1 56 VAL 56 281 281 VAL VAL A . n A 1 57 CYS 57 282 282 CYS CYS A . n A 1 58 ASN 58 283 283 ASN ASN A . n A 1 59 VAL 59 284 284 VAL VAL A . n A 1 60 THR 60 285 285 THR THR A . n A 1 61 ARG 61 286 286 ARG ARG A . n A 1 62 ARG 62 287 287 ARG ARG A . n A 1 63 PRO 63 288 288 PRO PRO A . n A 1 64 ALA 64 289 289 ALA ALA A . n A 1 65 SER 65 290 290 SER SER A . n A 1 66 HIS 66 291 291 HIS HIS A . n A 1 67 GLN 67 292 292 GLN GLN A . n A 1 68 THR 68 293 293 THR THR A . n A 1 69 PHE 69 294 294 PHE PHE A . n A 1 70 PRO 70 295 295 PRO PRO A . n A 1 71 LEU 71 296 296 LEU LEU A . n A 1 72 GLN 72 297 297 GLN GLN A . n A 1 73 GLN 73 298 298 GLN GLN A . n A 1 74 GLU 74 299 299 GLU GLU A . n A 1 75 SER 75 300 300 SER SER A . n A 1 76 GLY 76 301 301 GLY GLY A . n A 1 77 GLN 77 302 302 GLN GLN A . n A 1 78 THR 78 303 303 THR THR A . n A 1 79 VAL 79 304 304 VAL VAL A . n A 1 80 GLU 80 305 305 GLU GLU A . n A 1 81 CYS 81 306 306 CYS CYS A . n A 1 82 THR 82 307 307 THR THR A . n A 1 83 VAL 83 308 308 VAL VAL A . n A 1 84 ALA 84 309 309 ALA ALA A . n A 1 85 GLN 85 310 310 GLN GLN A . n A 1 86 TYR 86 311 311 TYR TYR A . n A 1 87 PHE 87 312 312 PHE PHE A . n A 1 88 LYS 88 313 313 LYS LYS A . n A 1 89 ASP 89 314 314 ASP ASP A . n A 1 90 ARG 90 315 315 ARG ARG A . n A 1 91 HIS 91 316 316 HIS HIS A . n A 1 92 LYS 92 317 317 LYS LYS A . n A 1 93 LEU 93 318 318 LEU LEU A . n A 1 94 VAL 94 319 319 VAL VAL A . n A 1 95 LEU 95 320 320 LEU LEU A . n A 1 96 ARG 96 321 321 ARG ARG A . n A 1 97 TYR 97 322 322 TYR TYR A . n A 1 98 PRO 98 323 323 PRO PRO A . n A 1 99 HIS 99 324 324 HIS HIS A . n A 1 100 LEU 100 325 325 LEU LEU A . n A 1 101 PRO 101 326 326 PRO PRO A . n A 1 102 CYS 102 327 327 CYS CYS A . n A 1 103 LEU 103 328 328 LEU LEU A . n A 1 104 GLN 104 329 329 GLN GLN A . n A 1 105 VAL 105 330 330 VAL VAL A . n A 1 106 GLY 106 331 331 GLY GLY A . n A 1 107 GLN 107 332 332 GLN GLN A . n A 1 108 GLU 108 333 333 GLU GLU A . n A 1 109 GLN 109 334 334 GLN GLN A . n A 1 110 LYS 110 335 335 LYS LYS A . n A 1 111 HIS 111 336 336 HIS HIS A . n A 1 112 THR 112 337 337 THR THR A . n A 1 113 TYR 113 338 338 TYR TYR A . n A 1 114 LEU 114 339 339 LEU LEU A . n A 1 115 PRO 115 340 340 PRO PRO A . n A 1 116 LEU 116 341 341 LEU LEU A . n A 1 117 GLU 117 342 342 GLU GLU A . n A 1 118 VAL 118 343 343 VAL VAL A . n A 1 119 CYS 119 344 344 CYS CYS A . n A 1 120 ASN 120 345 345 ASN ASN A . n A 1 121 ILE 121 346 346 ILE ILE A . n A 1 122 VAL 122 347 347 VAL VAL A . n A 1 123 ALA 123 348 348 ALA ALA A . n A 1 124 GLY 124 349 ? ? ? A . n A 1 125 GLN 125 350 ? ? ? A . n A 1 126 ARG 126 351 ? ? ? A . n A 1 127 CYS 127 352 ? ? ? A . n B 2 1 C 1 1 1 C C R . n B 2 2 G 2 2 2 G G R . n B 2 3 U 3 3 3 U U R . n B 2 4 G 4 4 4 G G R . n B 2 5 A 5 5 5 A A R . n B 2 6 C 6 6 6 C C R . n B 2 7 U 7 7 7 U U R . n B 2 8 C 8 8 8 C C R . n B 2 9 U 9 9 9 U U R . n C 2 1 C 1 1 ? ? ? S . n C 2 2 G 2 2 2 G G S . n C 2 3 U 3 3 3 U U S . n C 2 4 G 4 4 4 G G S . n C 2 5 A 5 5 5 A A S . n C 2 6 C 6 6 6 C C S . n C 2 7 U 7 7 7 U U S . n C 2 8 C 8 8 8 C C S . n C 2 9 U 9 9 9 U U S . n D 1 1 SER 1 226 ? ? ? B . n D 1 2 ALA 2 227 227 ALA ALA B . n D 1 3 GLN 3 228 228 GLN GLN B . n D 1 4 PRO 4 229 229 PRO PRO B . n D 1 5 VAL 5 230 230 VAL VAL B . n D 1 6 ILE 6 231 231 ILE ILE B . n D 1 7 GLU 7 232 232 GLU GLU B . n D 1 8 PHE 8 233 233 PHE PHE B . n D 1 9 VAL 9 234 234 VAL VAL B . n D 1 10 CYS 10 235 235 CYS CYS B . n D 1 11 GLU 11 236 236 GLU GLU B . n D 1 12 VAL 12 237 237 VAL VAL B . n D 1 13 LEU 13 238 238 LEU LEU B . n D 1 14 ASP 14 239 239 ASP ASP B . n D 1 15 PHE 15 240 240 PHE PHE B . n D 1 16 LYS 16 241 241 LYS LYS B . n D 1 17 SER 17 242 242 SER SER B . n D 1 18 ILE 18 243 243 ILE ILE B . n D 1 19 GLU 19 244 244 GLU GLU B . n D 1 20 GLU 20 245 245 GLU GLU B . n D 1 21 GLN 21 246 246 GLN GLN B . n D 1 22 GLN 22 247 247 GLN GLN B . n D 1 23 LYS 23 248 248 LYS LYS B . n D 1 24 PRO 24 249 249 PRO PRO B . n D 1 25 LEU 25 250 250 LEU LEU B . n D 1 26 THR 26 251 251 THR THR B . n D 1 27 ASP 27 252 252 ASP ASP B . n D 1 28 SER 28 253 253 SER SER B . n D 1 29 GLN 29 254 254 GLN GLN B . n D 1 30 ARG 30 255 255 ARG ARG B . n D 1 31 VAL 31 256 256 VAL VAL B . n D 1 32 LYS 32 257 257 LYS LYS B . n D 1 33 PHE 33 258 258 PHE PHE B . n D 1 34 THR 34 259 259 THR THR B . n D 1 35 LYS 35 260 260 LYS LYS B . n D 1 36 GLU 36 261 261 GLU GLU B . n D 1 37 ILE 37 262 262 ILE ILE B . n D 1 38 LYS 38 263 263 LYS LYS B . n D 1 39 GLY 39 264 264 GLY GLY B . n D 1 40 LEU 40 265 265 LEU LEU B . n D 1 41 LYS 41 266 266 LYS LYS B . n D 1 42 VAL 42 267 267 VAL VAL B . n D 1 43 GLU 43 268 268 GLU GLU B . n D 1 44 ILE 44 269 269 ILE ILE B . n D 1 45 THR 45 270 270 THR THR B . n D 1 46 HIS 46 271 271 HIS HIS B . n D 1 47 CYS 47 272 272 CYS CYS B . n D 1 48 GLY 48 273 273 GLY GLY B . n D 1 49 GLN 49 274 274 GLN GLN B . n D 1 50 MET 50 275 275 MET MET B . n D 1 51 LYS 51 276 276 LYS LYS B . n D 1 52 ARG 52 277 277 ARG ARG B . n D 1 53 LYS 53 278 278 LYS LYS B . n D 1 54 TYR 54 279 279 TYR TYR B . n D 1 55 ARG 55 280 280 ARG ARG B . n D 1 56 VAL 56 281 281 VAL VAL B . n D 1 57 CYS 57 282 282 CYS CYS B . n D 1 58 ASN 58 283 283 ASN ASN B . n D 1 59 VAL 59 284 284 VAL VAL B . n D 1 60 THR 60 285 285 THR THR B . n D 1 61 ARG 61 286 286 ARG ARG B . n D 1 62 ARG 62 287 287 ARG ARG B . n D 1 63 PRO 63 288 288 PRO PRO B . n D 1 64 ALA 64 289 289 ALA ALA B . n D 1 65 SER 65 290 290 SER SER B . n D 1 66 HIS 66 291 291 HIS HIS B . n D 1 67 GLN 67 292 292 GLN GLN B . n D 1 68 THR 68 293 293 THR THR B . n D 1 69 PHE 69 294 294 PHE PHE B . n D 1 70 PRO 70 295 295 PRO PRO B . n D 1 71 LEU 71 296 296 LEU LEU B . n D 1 72 GLN 72 297 297 GLN GLN B . n D 1 73 GLN 73 298 298 GLN ALA B . n D 1 74 GLU 74 299 ? ? ? B . n D 1 75 SER 75 300 ? ? ? B . n D 1 76 GLY 76 301 ? ? ? B . n D 1 77 GLN 77 302 ? ? ? B . n D 1 78 THR 78 303 303 THR THR B . n D 1 79 VAL 79 304 304 VAL VAL B . n D 1 80 GLU 80 305 305 GLU GLU B . n D 1 81 CYS 81 306 306 CYS CYS B . n D 1 82 THR 82 307 307 THR THR B . n D 1 83 VAL 83 308 308 VAL VAL B . n D 1 84 ALA 84 309 309 ALA ALA B . n D 1 85 GLN 85 310 310 GLN GLN B . n D 1 86 TYR 86 311 311 TYR TYR B . n D 1 87 PHE 87 312 312 PHE PHE B . n D 1 88 LYS 88 313 313 LYS LYS B . n D 1 89 ASP 89 314 314 ASP ASP B . n D 1 90 ARG 90 315 315 ARG ARG B . n D 1 91 HIS 91 316 316 HIS HIS B . n D 1 92 LYS 92 317 317 LYS LYS B . n D 1 93 LEU 93 318 318 LEU LEU B . n D 1 94 VAL 94 319 319 VAL VAL B . n D 1 95 LEU 95 320 320 LEU LEU B . n D 1 96 ARG 96 321 321 ARG ARG B . n D 1 97 TYR 97 322 322 TYR TYR B . n D 1 98 PRO 98 323 323 PRO PRO B . n D 1 99 HIS 99 324 324 HIS HIS B . n D 1 100 LEU 100 325 325 LEU LEU B . n D 1 101 PRO 101 326 326 PRO PRO B . n D 1 102 CYS 102 327 327 CYS CYS B . n D 1 103 LEU 103 328 328 LEU LEU B . n D 1 104 GLN 104 329 329 GLN GLN B . n D 1 105 VAL 105 330 330 VAL VAL B . n D 1 106 GLY 106 331 331 GLY GLY B . n D 1 107 GLN 107 332 332 GLN GLN B . n D 1 108 GLU 108 333 333 GLU GLU B . n D 1 109 GLN 109 334 334 GLN GLN B . n D 1 110 LYS 110 335 335 LYS LYS B . n D 1 111 HIS 111 336 336 HIS HIS B . n D 1 112 THR 112 337 337 THR THR B . n D 1 113 TYR 113 338 338 TYR TYR B . n D 1 114 LEU 114 339 339 LEU LEU B . n D 1 115 PRO 115 340 340 PRO PRO B . n D 1 116 LEU 116 341 341 LEU LEU B . n D 1 117 GLU 117 342 342 GLU GLU B . n D 1 118 VAL 118 343 343 VAL VAL B . n D 1 119 CYS 119 344 344 CYS CYS B . n D 1 120 ASN 120 345 345 ASN ASN B . n D 1 121 ILE 121 346 346 ILE ILE B . n D 1 122 VAL 122 347 347 VAL VAL B . n D 1 123 ALA 123 348 348 ALA ALA B . n D 1 124 GLY 124 349 349 GLY GLY B . n D 1 125 GLN 125 350 350 GLN GLN B . n D 1 126 ARG 126 351 ? ? ? B . n D 1 127 CYS 127 352 ? ? ? B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 HOH 1 401 15 HOH HOH A . E 3 HOH 2 402 2 HOH HOH A . E 3 HOH 3 403 7 HOH HOH A . E 3 HOH 4 404 1 HOH HOH A . E 3 HOH 5 405 5 HOH HOH A . E 3 HOH 6 406 9 HOH HOH A . E 3 HOH 7 407 3 HOH HOH A . F 3 HOH 1 101 4 HOH HOH R . G 3 HOH 1 401 13 HOH HOH B . G 3 HOH 2 402 14 HOH HOH B . G 3 HOH 3 403 16 HOH HOH B . G 3 HOH 4 404 12 HOH HOH B . G 3 HOH 5 405 10 HOH HOH B . G 3 HOH 6 406 11 HOH HOH B . G 3 HOH 7 407 6 HOH HOH B . G 3 HOH 8 408 8 HOH HOH B . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 0 A LYS 241 ? CG ? A LYS 16 CG 2 1 Y 0 A LYS 241 ? CD ? A LYS 16 CD 3 1 Y 0 A LYS 241 ? CE ? A LYS 16 CE 4 1 Y 0 A LYS 241 ? NZ ? A LYS 16 NZ 5 1 Y 0 A GLU 245 ? CB ? A GLU 20 CB 6 1 Y 0 A GLU 245 ? CG ? A GLU 20 CG 7 1 Y 0 A GLU 245 ? CD ? A GLU 20 CD 8 1 Y 0 A GLU 245 ? OE1 ? A GLU 20 OE1 9 1 Y 0 A GLU 245 ? OE2 ? A GLU 20 OE2 10 1 Y 0 A MET 275 ? CG ? A MET 50 CG 11 1 Y 0 A MET 275 ? SD ? A MET 50 SD 12 1 Y 0 A MET 275 ? CE ? A MET 50 CE 13 1 Y 0 A GLN 332 ? CB ? A GLN 107 CB 14 1 Y 0 A GLN 332 ? CG ? A GLN 107 CG 15 1 Y 0 A GLN 332 ? CD ? A GLN 107 CD 16 1 Y 0 A GLN 332 ? OE1 ? A GLN 107 OE1 17 1 Y 0 A GLN 332 ? NE2 ? A GLN 107 NE2 18 1 Y 0 A LYS 335 ? CG ? A LYS 110 CG 19 1 Y 0 A LYS 335 ? CD ? A LYS 110 CD 20 1 Y 0 A LYS 335 ? CE ? A LYS 110 CE 21 1 Y 0 A LYS 335 ? NZ ? A LYS 110 NZ 22 1 Y 0 R U 7 ? N1 ? B U 7 N1 23 1 Y 0 R U 7 ? C2 ? B U 7 C2 24 1 Y 0 R U 7 ? O2 ? B U 7 O2 25 1 Y 0 R U 7 ? N3 ? B U 7 N3 26 1 Y 0 R U 7 ? C4 ? B U 7 C4 27 1 Y 0 R U 7 ? O4 ? B U 7 O4 28 1 Y 0 R U 7 ? C5 ? B U 7 C5 29 1 Y 0 R U 7 ? C6 ? B U 7 C6 30 1 Y 0 B LYS 241 ? CG ? D LYS 16 CG 31 1 Y 0 B LYS 241 ? CD ? D LYS 16 CD 32 1 Y 0 B LYS 241 ? CE ? D LYS 16 CE 33 1 Y 0 B LYS 241 ? NZ ? D LYS 16 NZ 34 1 Y 0 B ARG 277 ? CD ? D ARG 52 CD 35 1 Y 0 B ARG 277 ? NE ? D ARG 52 NE 36 1 Y 0 B ARG 277 ? CZ ? D ARG 52 CZ 37 1 Y 0 B ARG 277 ? NH1 ? D ARG 52 NH1 38 1 Y 0 B LYS 278 ? CG ? D LYS 53 CG 39 1 Y 0 B LYS 278 ? CD ? D LYS 53 CD 40 1 Y 0 B LYS 278 ? CE ? D LYS 53 CE 41 1 Y 0 B LYS 278 ? NZ ? D LYS 53 NZ 42 1 Y 1 B GLN 298 ? CG ? D GLN 73 CG 43 1 Y 1 B GLN 298 ? CD ? D GLN 73 CD 44 1 Y 1 B GLN 298 ? OE1 ? D GLN 73 OE1 45 1 Y 1 B GLN 298 ? NE2 ? D GLN 73 NE2 46 1 Y 0 B VAL 304 ? CB ? D VAL 79 CB 47 1 Y 0 B VAL 304 ? CG1 ? D VAL 79 CG1 48 1 Y 0 B VAL 304 ? CG2 ? D VAL 79 CG2 49 1 Y 0 B GLN 332 ? CB ? D GLN 107 CB 50 1 Y 0 B GLN 332 ? CG ? D GLN 107 CG 51 1 Y 0 B GLN 332 ? CD ? D GLN 107 CD 52 1 Y 0 B GLN 332 ? OE1 ? D GLN 107 OE1 53 1 Y 0 B GLN 332 ? NE2 ? D GLN 107 NE2 54 1 Y 0 B LYS 335 ? CG ? D LYS 110 CG 55 1 Y 0 B LYS 335 ? CD ? D LYS 110 CD 56 1 Y 0 B LYS 335 ? CE ? D LYS 110 CE 57 1 Y 0 B LYS 335 ? NZ ? D LYS 110 NZ 58 1 Y 0 B GLY 349 ? CA ? D GLY 124 CA 59 1 Y 0 B GLY 349 ? O ? D GLY 124 O 60 1 Y 0 B GLN 350 ? C ? D GLN 125 C 61 1 Y 0 B GLN 350 ? O ? D GLN 125 O # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0415 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? MOLREP ? ? ? . 4 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 120.00 _cell.angle_gamma_esd ? _cell.entry_id 8THQ _cell.details ? _cell.formula_units_Z ? _cell.length_a 91.936 _cell.length_a_esd ? _cell.length_b 91.936 _cell.length_b_esd ? _cell.length_c 69.579 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 12 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8THQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8THQ _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.41 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 49.06 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.1 M HEPES pH 7.0, 30% v/v Jeffamine ED-2001' _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 291 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER X 9M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2018-10-19 _diffrn_detector.pdbx_frequency ? _diffrn_detector.id ? _diffrn_detector.number_of_axes ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9184 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 21-ID-D' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.9184 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 21-ID-D _diffrn_source.pdbx_synchrotron_site APS # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 8THQ _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.41 _reflns.d_resolution_low 26.55 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 13092 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I 2 _reflns.percent_possible_obs 100 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 19.3 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 31.5 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.986 _reflns.pdbx_CC_star 0.997 _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs 0.091 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 2.41 _reflns_shell.d_res_low 2.50 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 3 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 1301 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 20.2 _reflns_shell.pdbx_chi_squared 0.351 _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all 0.226 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.887 _reflns_shell.pdbx_CC_star 0.970 _reflns_shell.pdbx_R_split ? _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 1.026 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] -0.25 _refine.aniso_B[1][2] -0.13 _refine.aniso_B[1][3] -0.00 _refine.aniso_B[2][2] -0.25 _refine.aniso_B[2][3] 0.00 _refine.aniso_B[3][3] 0.83 _refine.B_iso_max ? _refine.B_iso_mean 68.206 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc 0.955 _refine.correlation_coeff_Fo_to_Fc_free 0.920 _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 8THQ _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.41 _refine.ls_d_res_low 26.55 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 12373 _refine.ls_number_reflns_R_free 670 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.69 _refine.ls_percent_reflns_R_free 5.1 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.21836 _refine.ls_R_factor_R_free 0.28369 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.21489 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details MASK _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.467 _refine.pdbx_overall_ESU_R_Free 0.303 _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 11.148 _refine.overall_SU_ML 0.251 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id 1 _refine_hist.details ? _refine_hist.d_res_high 2.41 _refine_hist.d_res_low 26.55 _refine_hist.number_atoms_solvent 16 _refine_hist.number_atoms_total 2348 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 1979 _refine_hist.pdbx_number_atoms_nucleic_acid 353 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.005 0.011 2409 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 0.001 0.016 2139 ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 1.464 1.707 3326 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 0.459 1.587 4962 ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? 8.206 5.000 240 ? r_dihedral_angle_1_deg ? ? 'X-RAY DIFFRACTION' ? 7.879 5.000 14 ? r_dihedral_angle_2_deg ? ? 'X-RAY DIFFRACTION' ? 16.322 10.000 384 ? r_dihedral_angle_3_deg ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_4_deg ? ? 'X-RAY DIFFRACTION' ? 0.061 0.200 390 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.006 0.020 2507 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 0.002 0.020 518 ? r_gen_planes_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbd_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbd_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbtor_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbtor_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_xyhbond_nbd_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_xyhbond_nbd_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_vdw_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_vdw_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_hbond_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_hbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_other ? ? 'X-RAY DIFFRACTION' ? 5.411 6.216 969 ? r_mcbond_it ? ? 'X-RAY DIFFRACTION' ? 5.404 6.216 969 ? r_mcbond_other ? ? 'X-RAY DIFFRACTION' ? 7.901 11.128 1206 ? r_mcangle_it ? ? 'X-RAY DIFFRACTION' ? 7.899 11.135 1207 ? r_mcangle_other ? ? 'X-RAY DIFFRACTION' ? 6.626 7.693 1440 ? r_scbond_it ? ? 'X-RAY DIFFRACTION' ? 6.624 7.696 1441 ? r_scbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_scangle_it ? ? 'X-RAY DIFFRACTION' ? 10.166 13.925 2121 ? r_scangle_other ? ? 'X-RAY DIFFRACTION' ? 14.794 87.13 2757 ? r_long_range_B_refined ? ? 'X-RAY DIFFRACTION' ? 14.814 87.13 2758 ? r_long_range_B_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_rigid_bond_restr ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_sphericity_free ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_sphericity_bonded ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 2.41 _refine_ls_shell.d_res_low 2.469 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 48 _refine_ls_shell.number_reflns_R_work 897 _refine_ls_shell.percent_reflns_obs 100.00 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.281 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_R_complete ? _refine_ls_shell.pdbx_total_number_of_bins_used ? _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? _refine_ls_shell.R_factor_R_free 0.392 # _struct.entry_id 8THQ _struct.title 'Nonamer RNA bound to hAgo2-PAZ' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8THQ _struct_keywords.text 'h-Ago2-PAZ, RNA, loopmeRNA, PAZ domain, RNA BINDING PROTEIN, RNA BINDING PROTEIN-RNA complex' _struct_keywords.pdbx_keywords 'RNA BINDING PROTEIN/RNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 1 ? E N N 3 ? F N N 3 ? G N N 3 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP AGO2_HUMAN Q9UKV8 ? 1 ;AQPVIEFVCEVLDFKSIEEQQKPLTDSQRVKFTKEIKGLKVEITHCGQMKRKYRVCNVTRRPASHQTFPLQQESGQTVEC TVAQYFKDRHKLVLRYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRC ; 227 2 PDB 8THQ 8THQ ? 2 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 8THQ A 2 ? 127 ? Q9UKV8 227 ? 352 ? 227 352 2 2 8THQ R 1 ? 9 ? 8THQ 1 ? 9 ? 1 9 3 2 8THQ S 1 ? 9 ? 8THQ 1 ? 9 ? 1 9 4 1 8THQ B 2 ? 127 ? Q9UKV8 227 ? 352 ? 227 352 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 8THQ SER A 1 ? UNP Q9UKV8 ? ? 'expression tag' 226 1 4 8THQ SER B 1 ? UNP Q9UKV8 ? ? 'expression tag' 226 2 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 VAL A 5 ? LEU A 13 ? VAL A 230 LEU A 238 1 ? 9 HELX_P HELX_P2 AA2 SER A 17 ? GLN A 21 ? SER A 242 GLN A 246 5 ? 5 HELX_P HELX_P3 AA3 THR A 26 ? LYS A 38 ? THR A 251 LYS A 263 1 ? 13 HELX_P HELX_P4 AA4 VAL A 83 ? ARG A 90 ? VAL A 308 ARG A 315 1 ? 8 HELX_P HELX_P5 AA5 GLN A 107 ? HIS A 111 ? GLN A 332 HIS A 336 5 ? 5 HELX_P HELX_P6 AA6 VAL D 5 ? ASP D 14 ? VAL B 230 ASP B 239 1 ? 10 HELX_P HELX_P7 AA7 SER D 17 ? GLN D 21 ? SER B 242 GLN B 246 5 ? 5 HELX_P HELX_P8 AA8 THR D 26 ? LYS D 38 ? THR B 251 LYS B 263 1 ? 13 HELX_P HELX_P9 AA9 VAL D 83 ? ARG D 90 ? VAL B 308 ARG B 315 1 ? 8 HELX_P HELX_P10 AB1 GLN D 107 ? HIS D 111 ? GLN B 332 HIS B 336 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? B G 2 N1 ? ? ? 1_555 C A 5 N1 ? ? R G 2 S A 5 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog2 hydrog ? ? B G 2 O6 ? ? ? 1_555 C A 5 N6 ? ? R G 2 S A 5 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog3 hydrog ? ? B U 3 N3 ? ? ? 1_555 C A 5 N1 ? ? R U 3 S A 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B U 3 O4 ? ? ? 1_555 C A 5 N6 ? ? R U 3 S A 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? B G 4 O6 ? ? ? 1_555 C G 4 N1 ? ? R G 4 S G 4 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? ? hydrog6 hydrog ? ? B A 5 N1 ? ? ? 1_555 C U 3 N3 ? ? R A 5 S U 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B A 5 N6 ? ? ? 1_555 C U 3 O4 ? ? R A 5 S U 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? B C 6 N3 ? ? ? 1_555 C G 2 N1 ? ? R C 6 S G 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B C 6 N4 ? ? ? 1_555 C G 2 O6 ? ? R C 6 S G 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? B C 6 O2 ? ? ? 1_555 C G 2 N2 ? ? R C 6 S G 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 6 ? AA2 ? 2 ? AA3 ? 6 ? AA4 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA1 4 5 ? anti-parallel AA1 5 6 ? anti-parallel AA2 1 2 ? anti-parallel AA3 1 2 ? anti-parallel AA3 2 3 ? anti-parallel AA3 3 4 ? anti-parallel AA3 4 5 ? anti-parallel AA3 5 6 ? anti-parallel AA4 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 GLN A 3 ? PRO A 4 ? GLN A 228 PRO A 229 AA1 2 CYS A 119 ? ILE A 121 ? CYS A 344 ILE A 346 AA1 3 LYS A 41 ? ILE A 44 ? LYS A 266 ILE A 269 AA1 4 LYS A 53 ? PRO A 63 ? LYS A 278 PRO A 288 AA1 5 PRO A 101 ? VAL A 105 ? PRO A 326 VAL A 330 AA1 6 THR A 112 ? PRO A 115 ? THR A 337 PRO A 340 AA2 1 THR A 68 ? GLN A 72 ? THR A 293 GLN A 297 AA2 2 THR A 78 ? THR A 82 ? THR A 303 THR A 307 AA3 1 GLN D 3 ? PRO D 4 ? GLN B 228 PRO B 229 AA3 2 CYS D 119 ? ILE D 121 ? CYS B 344 ILE B 346 AA3 3 LYS D 41 ? ILE D 44 ? LYS B 266 ILE B 269 AA3 4 LYS D 53 ? VAL D 59 ? LYS B 278 VAL B 284 AA3 5 CYS D 102 ? VAL D 105 ? CYS B 327 VAL B 330 AA3 6 TYR D 113 ? PRO D 115 ? TYR B 338 PRO B 340 AA4 1 THR D 68 ? PHE D 69 ? THR B 293 PHE B 294 AA4 2 CYS D 81 ? THR D 82 ? CYS B 306 THR B 307 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N GLN A 3 ? N GLN A 228 O ILE A 121 ? O ILE A 346 AA1 2 3 O ASN A 120 ? O ASN A 345 N GLU A 43 ? N GLU A 268 AA1 3 4 N VAL A 42 ? N VAL A 267 O TYR A 54 ? O TYR A 279 AA1 4 5 N THR A 60 ? N THR A 285 O CYS A 102 ? O CYS A 327 AA1 5 6 N LEU A 103 ? N LEU A 328 O LEU A 114 ? O LEU A 339 AA2 1 2 N LEU A 71 ? N LEU A 296 O VAL A 79 ? O VAL A 304 AA3 1 2 N GLN D 3 ? N GLN B 228 O ILE D 121 ? O ILE B 346 AA3 2 3 O ASN D 120 ? O ASN B 345 N GLU D 43 ? N GLU B 268 AA3 3 4 N VAL D 42 ? N VAL B 267 O TYR D 54 ? O TYR B 279 AA3 4 5 N ASN D 58 ? N ASN B 283 O GLN D 104 ? O GLN B 329 AA3 5 6 N LEU D 103 ? N LEU B 328 O LEU D 114 ? O LEU B 339 AA4 1 2 N PHE D 69 ? N PHE B 294 O CYS D 81 ? O CYS B 306 # _pdbx_entry_details.entry_id 8THQ _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification N # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 O4 R U 7 ? ? 1_555 CG B GLN 247 ? ? 2_654 1.65 2 1 O4 R U 7 ? ? 1_555 CD B GLN 247 ? ? 2_654 2.01 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 239 ? ? 39.54 62.02 2 1 LYS A 241 ? ? -74.90 -73.11 3 1 CYS A 272 ? ? -105.44 42.39 4 1 LYS A 276 ? ? -102.69 78.59 5 1 SER A 300 ? ? -58.57 -149.22 6 1 GLN A 332 ? ? 68.57 127.37 7 1 PRO B 249 ? ? -47.52 153.00 8 1 CYS B 272 ? ? -142.66 48.97 9 1 LYS B 276 ? ? -69.85 77.14 10 1 VAL B 304 ? ? -110.46 77.95 11 1 GLU B 305 ? ? -39.14 127.25 12 1 ASP B 314 ? ? -74.99 -71.58 13 1 PRO B 326 ? ? -69.82 -177.19 14 1 ALA B 348 ? ? -85.28 -100.37 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 349 ? A GLY 124 2 1 Y 1 A GLN 350 ? A GLN 125 3 1 Y 1 A ARG 351 ? A ARG 126 4 1 Y 1 A CYS 352 ? A CYS 127 5 1 Y 1 S C 1 ? C C 1 6 1 Y 1 B SER 226 ? D SER 1 7 1 Y 1 B GLU 299 ? D GLU 74 8 1 Y 1 B SER 300 ? D SER 75 9 1 Y 1 B GLY 301 ? D GLY 76 10 1 Y 1 B GLN 302 ? D GLN 77 11 1 Y 1 B ARG 351 ? D ARG 126 12 1 Y 1 B CYS 352 ? D CYS 127 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 ALA N N N N 38 ALA CA C N S 39 ALA C C N N 40 ALA O O N N 41 ALA CB C N N 42 ALA OXT O N N 43 ALA H H N N 44 ALA H2 H N N 45 ALA HA H N N 46 ALA HB1 H N N 47 ALA HB2 H N N 48 ALA HB3 H N N 49 ALA HXT H N N 50 ARG N N N N 51 ARG CA C N S 52 ARG C C N N 53 ARG O O N N 54 ARG CB C N N 55 ARG CG C N N 56 ARG CD C N N 57 ARG NE N N N 58 ARG CZ C N N 59 ARG NH1 N N N 60 ARG NH2 N N N 61 ARG OXT O N N 62 ARG H H N N 63 ARG H2 H N N 64 ARG HA H N N 65 ARG HB2 H N N 66 ARG HB3 H N N 67 ARG HG2 H N N 68 ARG HG3 H N N 69 ARG HD2 H N N 70 ARG HD3 H N N 71 ARG HE H N N 72 ARG HH11 H N N 73 ARG HH12 H N N 74 ARG HH21 H N N 75 ARG HH22 H N N 76 ARG HXT H N N 77 ASN N N N N 78 ASN CA C N S 79 ASN C C N N 80 ASN O O N N 81 ASN CB C N N 82 ASN CG C N N 83 ASN OD1 O N N 84 ASN ND2 N N N 85 ASN OXT O N N 86 ASN H H N N 87 ASN H2 H N N 88 ASN HA H N N 89 ASN HB2 H N N 90 ASN HB3 H N N 91 ASN HD21 H N N 92 ASN HD22 H N N 93 ASN HXT H N N 94 ASP N N N N 95 ASP CA C N S 96 ASP C C N N 97 ASP O O N N 98 ASP CB C N N 99 ASP CG C N N 100 ASP OD1 O N N 101 ASP OD2 O N N 102 ASP OXT O N N 103 ASP H H N N 104 ASP H2 H N N 105 ASP HA H N N 106 ASP HB2 H N N 107 ASP HB3 H N N 108 ASP HD2 H N N 109 ASP HXT H N N 110 C OP3 O N N 111 C P P N N 112 C OP1 O N N 113 C OP2 O N N 114 C "O5'" O N N 115 C "C5'" C N N 116 C "C4'" C N R 117 C "O4'" O N N 118 C "C3'" C N S 119 C "O3'" O N N 120 C "C2'" C N R 121 C "O2'" O N N 122 C "C1'" C N R 123 C N1 N N N 124 C C2 C N N 125 C O2 O N N 126 C N3 N N N 127 C C4 C N N 128 C N4 N N N 129 C C5 C N N 130 C C6 C N N 131 C HOP3 H N N 132 C HOP2 H N N 133 C "H5'" H N N 134 C "H5''" H N N 135 C "H4'" H N N 136 C "H3'" H N N 137 C "HO3'" H N N 138 C "H2'" H N N 139 C "HO2'" H N N 140 C "H1'" H N N 141 C H41 H N N 142 C H42 H N N 143 C H5 H N N 144 C H6 H N N 145 CYS N N N N 146 CYS CA C N R 147 CYS C C N N 148 CYS O O N N 149 CYS CB C N N 150 CYS SG S N N 151 CYS OXT O N N 152 CYS H H N N 153 CYS H2 H N N 154 CYS HA H N N 155 CYS HB2 H N N 156 CYS HB3 H N N 157 CYS HG H N N 158 CYS HXT H N N 159 G OP3 O N N 160 G P P N N 161 G OP1 O N N 162 G OP2 O N N 163 G "O5'" O N N 164 G "C5'" C N N 165 G "C4'" C N R 166 G "O4'" O N N 167 G "C3'" C N S 168 G "O3'" O N N 169 G "C2'" C N R 170 G "O2'" O N N 171 G "C1'" C N R 172 G N9 N Y N 173 G C8 C Y N 174 G N7 N Y N 175 G C5 C Y N 176 G C6 C N N 177 G O6 O N N 178 G N1 N N N 179 G C2 C N N 180 G N2 N N N 181 G N3 N N N 182 G C4 C Y N 183 G HOP3 H N N 184 G HOP2 H N N 185 G "H5'" H N N 186 G "H5''" H N N 187 G "H4'" H N N 188 G "H3'" H N N 189 G "HO3'" H N N 190 G "H2'" H N N 191 G "HO2'" H N N 192 G "H1'" H N N 193 G H8 H N N 194 G H1 H N N 195 G H21 H N N 196 G H22 H N N 197 GLN N N N N 198 GLN CA C N S 199 GLN C C N N 200 GLN O O N N 201 GLN CB C N N 202 GLN CG C N N 203 GLN CD C N N 204 GLN OE1 O N N 205 GLN NE2 N N N 206 GLN OXT O N N 207 GLN H H N N 208 GLN H2 H N N 209 GLN HA H N N 210 GLN HB2 H N N 211 GLN HB3 H N N 212 GLN HG2 H N N 213 GLN HG3 H N N 214 GLN HE21 H N N 215 GLN HE22 H N N 216 GLN HXT H N N 217 GLU N N N N 218 GLU CA C N S 219 GLU C C N N 220 GLU O O N N 221 GLU CB C N N 222 GLU CG C N N 223 GLU CD C N N 224 GLU OE1 O N N 225 GLU OE2 O N N 226 GLU OXT O N N 227 GLU H H N N 228 GLU H2 H N N 229 GLU HA H N N 230 GLU HB2 H N N 231 GLU HB3 H N N 232 GLU HG2 H N N 233 GLU HG3 H N N 234 GLU HE2 H N N 235 GLU HXT H N N 236 GLY N N N N 237 GLY CA C N N 238 GLY C C N N 239 GLY O O N N 240 GLY OXT O N N 241 GLY H H N N 242 GLY H2 H N N 243 GLY HA2 H N N 244 GLY HA3 H N N 245 GLY HXT H N N 246 HIS N N N N 247 HIS CA C N S 248 HIS C C N N 249 HIS O O N N 250 HIS CB C N N 251 HIS CG C Y N 252 HIS ND1 N Y N 253 HIS CD2 C Y N 254 HIS CE1 C Y N 255 HIS NE2 N Y N 256 HIS OXT O N N 257 HIS H H N N 258 HIS H2 H N N 259 HIS HA H N N 260 HIS HB2 H N N 261 HIS HB3 H N N 262 HIS HD1 H N N 263 HIS HD2 H N N 264 HIS HE1 H N N 265 HIS HE2 H N N 266 HIS HXT H N N 267 HOH O O N N 268 HOH H1 H N N 269 HOH H2 H N N 270 ILE N N N N 271 ILE CA C N S 272 ILE C C N N 273 ILE O O N N 274 ILE CB C N S 275 ILE CG1 C N N 276 ILE CG2 C N N 277 ILE CD1 C N N 278 ILE OXT O N N 279 ILE H H N N 280 ILE H2 H N N 281 ILE HA H N N 282 ILE HB H N N 283 ILE HG12 H N N 284 ILE HG13 H N N 285 ILE HG21 H N N 286 ILE HG22 H N N 287 ILE HG23 H N N 288 ILE HD11 H N N 289 ILE HD12 H N N 290 ILE HD13 H N N 291 ILE HXT H N N 292 LEU N N N N 293 LEU CA C N S 294 LEU C C N N 295 LEU O O N N 296 LEU CB C N N 297 LEU CG C N N 298 LEU CD1 C N N 299 LEU CD2 C N N 300 LEU OXT O N N 301 LEU H H N N 302 LEU H2 H N N 303 LEU HA H N N 304 LEU HB2 H N N 305 LEU HB3 H N N 306 LEU HG H N N 307 LEU HD11 H N N 308 LEU HD12 H N N 309 LEU HD13 H N N 310 LEU HD21 H N N 311 LEU HD22 H N N 312 LEU HD23 H N N 313 LEU HXT H N N 314 LYS N N N N 315 LYS CA C N S 316 LYS C C N N 317 LYS O O N N 318 LYS CB C N N 319 LYS CG C N N 320 LYS CD C N N 321 LYS CE C N N 322 LYS NZ N N N 323 LYS OXT O N N 324 LYS H H N N 325 LYS H2 H N N 326 LYS HA H N N 327 LYS HB2 H N N 328 LYS HB3 H N N 329 LYS HG2 H N N 330 LYS HG3 H N N 331 LYS HD2 H N N 332 LYS HD3 H N N 333 LYS HE2 H N N 334 LYS HE3 H N N 335 LYS HZ1 H N N 336 LYS HZ2 H N N 337 LYS HZ3 H N N 338 LYS HXT H N N 339 MET N N N N 340 MET CA C N S 341 MET C C N N 342 MET O O N N 343 MET CB C N N 344 MET CG C N N 345 MET SD S N N 346 MET CE C N N 347 MET OXT O N N 348 MET H H N N 349 MET H2 H N N 350 MET HA H N N 351 MET HB2 H N N 352 MET HB3 H N N 353 MET HG2 H N N 354 MET HG3 H N N 355 MET HE1 H N N 356 MET HE2 H N N 357 MET HE3 H N N 358 MET HXT H N N 359 PHE N N N N 360 PHE CA C N S 361 PHE C C N N 362 PHE O O N N 363 PHE CB C N N 364 PHE CG C Y N 365 PHE CD1 C Y N 366 PHE CD2 C Y N 367 PHE CE1 C Y N 368 PHE CE2 C Y N 369 PHE CZ C Y N 370 PHE OXT O N N 371 PHE H H N N 372 PHE H2 H N N 373 PHE HA H N N 374 PHE HB2 H N N 375 PHE HB3 H N N 376 PHE HD1 H N N 377 PHE HD2 H N N 378 PHE HE1 H N N 379 PHE HE2 H N N 380 PHE HZ H N N 381 PHE HXT H N N 382 PRO N N N N 383 PRO CA C N S 384 PRO C C N N 385 PRO O O N N 386 PRO CB C N N 387 PRO CG C N N 388 PRO CD C N N 389 PRO OXT O N N 390 PRO H H N N 391 PRO HA H N N 392 PRO HB2 H N N 393 PRO HB3 H N N 394 PRO HG2 H N N 395 PRO HG3 H N N 396 PRO HD2 H N N 397 PRO HD3 H N N 398 PRO HXT H N N 399 SER N N N N 400 SER CA C N S 401 SER C C N N 402 SER O O N N 403 SER CB C N N 404 SER OG O N N 405 SER OXT O N N 406 SER H H N N 407 SER H2 H N N 408 SER HA H N N 409 SER HB2 H N N 410 SER HB3 H N N 411 SER HG H N N 412 SER HXT H N N 413 THR N N N N 414 THR CA C N S 415 THR C C N N 416 THR O O N N 417 THR CB C N R 418 THR OG1 O N N 419 THR CG2 C N N 420 THR OXT O N N 421 THR H H N N 422 THR H2 H N N 423 THR HA H N N 424 THR HB H N N 425 THR HG1 H N N 426 THR HG21 H N N 427 THR HG22 H N N 428 THR HG23 H N N 429 THR HXT H N N 430 TYR N N N N 431 TYR CA C N S 432 TYR C C N N 433 TYR O O N N 434 TYR CB C N N 435 TYR CG C Y N 436 TYR CD1 C Y N 437 TYR CD2 C Y N 438 TYR CE1 C Y N 439 TYR CE2 C Y N 440 TYR CZ C Y N 441 TYR OH O N N 442 TYR OXT O N N 443 TYR H H N N 444 TYR H2 H N N 445 TYR HA H N N 446 TYR HB2 H N N 447 TYR HB3 H N N 448 TYR HD1 H N N 449 TYR HD2 H N N 450 TYR HE1 H N N 451 TYR HE2 H N N 452 TYR HH H N N 453 TYR HXT H N N 454 U OP3 O N N 455 U P P N N 456 U OP1 O N N 457 U OP2 O N N 458 U "O5'" O N N 459 U "C5'" C N N 460 U "C4'" C N R 461 U "O4'" O N N 462 U "C3'" C N S 463 U "O3'" O N N 464 U "C2'" C N R 465 U "O2'" O N N 466 U "C1'" C N R 467 U N1 N N N 468 U C2 C N N 469 U O2 O N N 470 U N3 N N N 471 U C4 C N N 472 U O4 O N N 473 U C5 C N N 474 U C6 C N N 475 U HOP3 H N N 476 U HOP2 H N N 477 U "H5'" H N N 478 U "H5''" H N N 479 U "H4'" H N N 480 U "H3'" H N N 481 U "HO3'" H N N 482 U "H2'" H N N 483 U "HO2'" H N N 484 U "H1'" H N N 485 U H3 H N N 486 U H5 H N N 487 U H6 H N N 488 VAL N N N N 489 VAL CA C N S 490 VAL C C N N 491 VAL O O N N 492 VAL CB C N N 493 VAL CG1 C N N 494 VAL CG2 C N N 495 VAL OXT O N N 496 VAL H H N N 497 VAL H2 H N N 498 VAL HA H N N 499 VAL HB H N N 500 VAL HG11 H N N 501 VAL HG12 H N N 502 VAL HG13 H N N 503 VAL HG21 H N N 504 VAL HG22 H N N 505 VAL HG23 H N N 506 VAL HXT H N N 507 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 ALA N CA sing N N 40 ALA N H sing N N 41 ALA N H2 sing N N 42 ALA CA C sing N N 43 ALA CA CB sing N N 44 ALA CA HA sing N N 45 ALA C O doub N N 46 ALA C OXT sing N N 47 ALA CB HB1 sing N N 48 ALA CB HB2 sing N N 49 ALA CB HB3 sing N N 50 ALA OXT HXT sing N N 51 ARG N CA sing N N 52 ARG N H sing N N 53 ARG N H2 sing N N 54 ARG CA C sing N N 55 ARG CA CB sing N N 56 ARG CA HA sing N N 57 ARG C O doub N N 58 ARG C OXT sing N N 59 ARG CB CG sing N N 60 ARG CB HB2 sing N N 61 ARG CB HB3 sing N N 62 ARG CG CD sing N N 63 ARG CG HG2 sing N N 64 ARG CG HG3 sing N N 65 ARG CD NE sing N N 66 ARG CD HD2 sing N N 67 ARG CD HD3 sing N N 68 ARG NE CZ sing N N 69 ARG NE HE sing N N 70 ARG CZ NH1 sing N N 71 ARG CZ NH2 doub N N 72 ARG NH1 HH11 sing N N 73 ARG NH1 HH12 sing N N 74 ARG NH2 HH21 sing N N 75 ARG NH2 HH22 sing N N 76 ARG OXT HXT sing N N 77 ASN N CA sing N N 78 ASN N H sing N N 79 ASN N H2 sing N N 80 ASN CA C sing N N 81 ASN CA CB sing N N 82 ASN CA HA sing N N 83 ASN C O doub N N 84 ASN C OXT sing N N 85 ASN CB CG sing N N 86 ASN CB HB2 sing N N 87 ASN CB HB3 sing N N 88 ASN CG OD1 doub N N 89 ASN CG ND2 sing N N 90 ASN ND2 HD21 sing N N 91 ASN ND2 HD22 sing N N 92 ASN OXT HXT sing N N 93 ASP N CA sing N N 94 ASP N H sing N N 95 ASP N H2 sing N N 96 ASP CA C sing N N 97 ASP CA CB sing N N 98 ASP CA HA sing N N 99 ASP C O doub N N 100 ASP C OXT sing N N 101 ASP CB CG sing N N 102 ASP CB HB2 sing N N 103 ASP CB HB3 sing N N 104 ASP CG OD1 doub N N 105 ASP CG OD2 sing N N 106 ASP OD2 HD2 sing N N 107 ASP OXT HXT sing N N 108 C OP3 P sing N N 109 C OP3 HOP3 sing N N 110 C P OP1 doub N N 111 C P OP2 sing N N 112 C P "O5'" sing N N 113 C OP2 HOP2 sing N N 114 C "O5'" "C5'" sing N N 115 C "C5'" "C4'" sing N N 116 C "C5'" "H5'" sing N N 117 C "C5'" "H5''" sing N N 118 C "C4'" "O4'" sing N N 119 C "C4'" "C3'" sing N N 120 C "C4'" "H4'" sing N N 121 C "O4'" "C1'" sing N N 122 C "C3'" "O3'" sing N N 123 C "C3'" "C2'" sing N N 124 C "C3'" "H3'" sing N N 125 C "O3'" "HO3'" sing N N 126 C "C2'" "O2'" sing N N 127 C "C2'" "C1'" sing N N 128 C "C2'" "H2'" sing N N 129 C "O2'" "HO2'" sing N N 130 C "C1'" N1 sing N N 131 C "C1'" "H1'" sing N N 132 C N1 C2 sing N N 133 C N1 C6 sing N N 134 C C2 O2 doub N N 135 C C2 N3 sing N N 136 C N3 C4 doub N N 137 C C4 N4 sing N N 138 C C4 C5 sing N N 139 C N4 H41 sing N N 140 C N4 H42 sing N N 141 C C5 C6 doub N N 142 C C5 H5 sing N N 143 C C6 H6 sing N N 144 CYS N CA sing N N 145 CYS N H sing N N 146 CYS N H2 sing N N 147 CYS CA C sing N N 148 CYS CA CB sing N N 149 CYS CA HA sing N N 150 CYS C O doub N N 151 CYS C OXT sing N N 152 CYS CB SG sing N N 153 CYS CB HB2 sing N N 154 CYS CB HB3 sing N N 155 CYS SG HG sing N N 156 CYS OXT HXT sing N N 157 G OP3 P sing N N 158 G OP3 HOP3 sing N N 159 G P OP1 doub N N 160 G P OP2 sing N N 161 G P "O5'" sing N N 162 G OP2 HOP2 sing N N 163 G "O5'" "C5'" sing N N 164 G "C5'" "C4'" sing N N 165 G "C5'" "H5'" sing N N 166 G "C5'" "H5''" sing N N 167 G "C4'" "O4'" sing N N 168 G "C4'" "C3'" sing N N 169 G "C4'" "H4'" sing N N 170 G "O4'" "C1'" sing N N 171 G "C3'" "O3'" sing N N 172 G "C3'" "C2'" sing N N 173 G "C3'" "H3'" sing N N 174 G "O3'" "HO3'" sing N N 175 G "C2'" "O2'" sing N N 176 G "C2'" "C1'" sing N N 177 G "C2'" "H2'" sing N N 178 G "O2'" "HO2'" sing N N 179 G "C1'" N9 sing N N 180 G "C1'" "H1'" sing N N 181 G N9 C8 sing Y N 182 G N9 C4 sing Y N 183 G C8 N7 doub Y N 184 G C8 H8 sing N N 185 G N7 C5 sing Y N 186 G C5 C6 sing N N 187 G C5 C4 doub Y N 188 G C6 O6 doub N N 189 G C6 N1 sing N N 190 G N1 C2 sing N N 191 G N1 H1 sing N N 192 G C2 N2 sing N N 193 G C2 N3 doub N N 194 G N2 H21 sing N N 195 G N2 H22 sing N N 196 G N3 C4 sing N N 197 GLN N CA sing N N 198 GLN N H sing N N 199 GLN N H2 sing N N 200 GLN CA C sing N N 201 GLN CA CB sing N N 202 GLN CA HA sing N N 203 GLN C O doub N N 204 GLN C OXT sing N N 205 GLN CB CG sing N N 206 GLN CB HB2 sing N N 207 GLN CB HB3 sing N N 208 GLN CG CD sing N N 209 GLN CG HG2 sing N N 210 GLN CG HG3 sing N N 211 GLN CD OE1 doub N N 212 GLN CD NE2 sing N N 213 GLN NE2 HE21 sing N N 214 GLN NE2 HE22 sing N N 215 GLN OXT HXT sing N N 216 GLU N CA sing N N 217 GLU N H sing N N 218 GLU N H2 sing N N 219 GLU CA C sing N N 220 GLU CA CB sing N N 221 GLU CA HA sing N N 222 GLU C O doub N N 223 GLU C OXT sing N N 224 GLU CB CG sing N N 225 GLU CB HB2 sing N N 226 GLU CB HB3 sing N N 227 GLU CG CD sing N N 228 GLU CG HG2 sing N N 229 GLU CG HG3 sing N N 230 GLU CD OE1 doub N N 231 GLU CD OE2 sing N N 232 GLU OE2 HE2 sing N N 233 GLU OXT HXT sing N N 234 GLY N CA sing N N 235 GLY N H sing N N 236 GLY N H2 sing N N 237 GLY CA C sing N N 238 GLY CA HA2 sing N N 239 GLY CA HA3 sing N N 240 GLY C O doub N N 241 GLY C OXT sing N N 242 GLY OXT HXT sing N N 243 HIS N CA sing N N 244 HIS N H sing N N 245 HIS N H2 sing N N 246 HIS CA C sing N N 247 HIS CA CB sing N N 248 HIS CA HA sing N N 249 HIS C O doub N N 250 HIS C OXT sing N N 251 HIS CB CG sing N N 252 HIS CB HB2 sing N N 253 HIS CB HB3 sing N N 254 HIS CG ND1 sing Y N 255 HIS CG CD2 doub Y N 256 HIS ND1 CE1 doub Y N 257 HIS ND1 HD1 sing N N 258 HIS CD2 NE2 sing Y N 259 HIS CD2 HD2 sing N N 260 HIS CE1 NE2 sing Y N 261 HIS CE1 HE1 sing N N 262 HIS NE2 HE2 sing N N 263 HIS OXT HXT sing N N 264 HOH O H1 sing N N 265 HOH O H2 sing N N 266 ILE N CA sing N N 267 ILE N H sing N N 268 ILE N H2 sing N N 269 ILE CA C sing N N 270 ILE CA CB sing N N 271 ILE CA HA sing N N 272 ILE C O doub N N 273 ILE C OXT sing N N 274 ILE CB CG1 sing N N 275 ILE CB CG2 sing N N 276 ILE CB HB sing N N 277 ILE CG1 CD1 sing N N 278 ILE CG1 HG12 sing N N 279 ILE CG1 HG13 sing N N 280 ILE CG2 HG21 sing N N 281 ILE CG2 HG22 sing N N 282 ILE CG2 HG23 sing N N 283 ILE CD1 HD11 sing N N 284 ILE CD1 HD12 sing N N 285 ILE CD1 HD13 sing N N 286 ILE OXT HXT sing N N 287 LEU N CA sing N N 288 LEU N H sing N N 289 LEU N H2 sing N N 290 LEU CA C sing N N 291 LEU CA CB sing N N 292 LEU CA HA sing N N 293 LEU C O doub N N 294 LEU C OXT sing N N 295 LEU CB CG sing N N 296 LEU CB HB2 sing N N 297 LEU CB HB3 sing N N 298 LEU CG CD1 sing N N 299 LEU CG CD2 sing N N 300 LEU CG HG sing N N 301 LEU CD1 HD11 sing N N 302 LEU CD1 HD12 sing N N 303 LEU CD1 HD13 sing N N 304 LEU CD2 HD21 sing N N 305 LEU CD2 HD22 sing N N 306 LEU CD2 HD23 sing N N 307 LEU OXT HXT sing N N 308 LYS N CA sing N N 309 LYS N H sing N N 310 LYS N H2 sing N N 311 LYS CA C sing N N 312 LYS CA CB sing N N 313 LYS CA HA sing N N 314 LYS C O doub N N 315 LYS C OXT sing N N 316 LYS CB CG sing N N 317 LYS CB HB2 sing N N 318 LYS CB HB3 sing N N 319 LYS CG CD sing N N 320 LYS CG HG2 sing N N 321 LYS CG HG3 sing N N 322 LYS CD CE sing N N 323 LYS CD HD2 sing N N 324 LYS CD HD3 sing N N 325 LYS CE NZ sing N N 326 LYS CE HE2 sing N N 327 LYS CE HE3 sing N N 328 LYS NZ HZ1 sing N N 329 LYS NZ HZ2 sing N N 330 LYS NZ HZ3 sing N N 331 LYS OXT HXT sing N N 332 MET N CA sing N N 333 MET N H sing N N 334 MET N H2 sing N N 335 MET CA C sing N N 336 MET CA CB sing N N 337 MET CA HA sing N N 338 MET C O doub N N 339 MET C OXT sing N N 340 MET CB CG sing N N 341 MET CB HB2 sing N N 342 MET CB HB3 sing N N 343 MET CG SD sing N N 344 MET CG HG2 sing N N 345 MET CG HG3 sing N N 346 MET SD CE sing N N 347 MET CE HE1 sing N N 348 MET CE HE2 sing N N 349 MET CE HE3 sing N N 350 MET OXT HXT sing N N 351 PHE N CA sing N N 352 PHE N H sing N N 353 PHE N H2 sing N N 354 PHE CA C sing N N 355 PHE CA CB sing N N 356 PHE CA HA sing N N 357 PHE C O doub N N 358 PHE C OXT sing N N 359 PHE CB CG sing N N 360 PHE CB HB2 sing N N 361 PHE CB HB3 sing N N 362 PHE CG CD1 doub Y N 363 PHE CG CD2 sing Y N 364 PHE CD1 CE1 sing Y N 365 PHE CD1 HD1 sing N N 366 PHE CD2 CE2 doub Y N 367 PHE CD2 HD2 sing N N 368 PHE CE1 CZ doub Y N 369 PHE CE1 HE1 sing N N 370 PHE CE2 CZ sing Y N 371 PHE CE2 HE2 sing N N 372 PHE CZ HZ sing N N 373 PHE OXT HXT sing N N 374 PRO N CA sing N N 375 PRO N CD sing N N 376 PRO N H sing N N 377 PRO CA C sing N N 378 PRO CA CB sing N N 379 PRO CA HA sing N N 380 PRO C O doub N N 381 PRO C OXT sing N N 382 PRO CB CG sing N N 383 PRO CB HB2 sing N N 384 PRO CB HB3 sing N N 385 PRO CG CD sing N N 386 PRO CG HG2 sing N N 387 PRO CG HG3 sing N N 388 PRO CD HD2 sing N N 389 PRO CD HD3 sing N N 390 PRO OXT HXT sing N N 391 SER N CA sing N N 392 SER N H sing N N 393 SER N H2 sing N N 394 SER CA C sing N N 395 SER CA CB sing N N 396 SER CA HA sing N N 397 SER C O doub N N 398 SER C OXT sing N N 399 SER CB OG sing N N 400 SER CB HB2 sing N N 401 SER CB HB3 sing N N 402 SER OG HG sing N N 403 SER OXT HXT sing N N 404 THR N CA sing N N 405 THR N H sing N N 406 THR N H2 sing N N 407 THR CA C sing N N 408 THR CA CB sing N N 409 THR CA HA sing N N 410 THR C O doub N N 411 THR C OXT sing N N 412 THR CB OG1 sing N N 413 THR CB CG2 sing N N 414 THR CB HB sing N N 415 THR OG1 HG1 sing N N 416 THR CG2 HG21 sing N N 417 THR CG2 HG22 sing N N 418 THR CG2 HG23 sing N N 419 THR OXT HXT sing N N 420 TYR N CA sing N N 421 TYR N H sing N N 422 TYR N H2 sing N N 423 TYR CA C sing N N 424 TYR CA CB sing N N 425 TYR CA HA sing N N 426 TYR C O doub N N 427 TYR C OXT sing N N 428 TYR CB CG sing N N 429 TYR CB HB2 sing N N 430 TYR CB HB3 sing N N 431 TYR CG CD1 doub Y N 432 TYR CG CD2 sing Y N 433 TYR CD1 CE1 sing Y N 434 TYR CD1 HD1 sing N N 435 TYR CD2 CE2 doub Y N 436 TYR CD2 HD2 sing N N 437 TYR CE1 CZ doub Y N 438 TYR CE1 HE1 sing N N 439 TYR CE2 CZ sing Y N 440 TYR CE2 HE2 sing N N 441 TYR CZ OH sing N N 442 TYR OH HH sing N N 443 TYR OXT HXT sing N N 444 U OP3 P sing N N 445 U OP3 HOP3 sing N N 446 U P OP1 doub N N 447 U P OP2 sing N N 448 U P "O5'" sing N N 449 U OP2 HOP2 sing N N 450 U "O5'" "C5'" sing N N 451 U "C5'" "C4'" sing N N 452 U "C5'" "H5'" sing N N 453 U "C5'" "H5''" sing N N 454 U "C4'" "O4'" sing N N 455 U "C4'" "C3'" sing N N 456 U "C4'" "H4'" sing N N 457 U "O4'" "C1'" sing N N 458 U "C3'" "O3'" sing N N 459 U "C3'" "C2'" sing N N 460 U "C3'" "H3'" sing N N 461 U "O3'" "HO3'" sing N N 462 U "C2'" "O2'" sing N N 463 U "C2'" "C1'" sing N N 464 U "C2'" "H2'" sing N N 465 U "O2'" "HO2'" sing N N 466 U "C1'" N1 sing N N 467 U "C1'" "H1'" sing N N 468 U N1 C2 sing N N 469 U N1 C6 sing N N 470 U C2 O2 doub N N 471 U C2 N3 sing N N 472 U N3 C4 sing N N 473 U N3 H3 sing N N 474 U C4 O4 doub N N 475 U C4 C5 sing N N 476 U C5 C6 doub N N 477 U C5 H5 sing N N 478 U C6 H6 sing N N 479 VAL N CA sing N N 480 VAL N H sing N N 481 VAL N H2 sing N N 482 VAL CA C sing N N 483 VAL CA CB sing N N 484 VAL CA HA sing N N 485 VAL C O doub N N 486 VAL C OXT sing N N 487 VAL CB CG1 sing N N 488 VAL CB CG2 sing N N 489 VAL CB HB sing N N 490 VAL CG1 HG11 sing N N 491 VAL CG1 HG12 sing N N 492 VAL CG1 HG13 sing N N 493 VAL CG2 HG21 sing N N 494 VAL CG2 HG22 sing N N 495 VAL CG2 HG23 sing N N 496 VAL OXT HXT sing N N 497 # _ndb_struct_conf_na.entry_id 8THQ _ndb_struct_conf_na.feature 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B U 3 1_555 C A 5 1_555 0.259 0.012 1.084 36.846 -13.436 2.678 1 R_U3:A5_S R 3 ? S 5 ? 20 1 1 B G 4 1_555 C G 4 1_555 -0.922 1.625 -0.723 18.116 -29.838 9.548 2 R_G4:G4_S R 4 ? S 4 ? ? ? 1 B A 5 1_555 C U 3 1_555 -0.604 0.573 0.679 4.331 0.495 -5.744 3 R_A5:U3_S R 5 ? S 3 ? 20 1 1 B C 6 1_555 C G 2 1_555 0.181 -0.369 -1.057 19.164 -13.444 2.177 4 R_C6:G2_S R 6 ? S 2 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B U 3 1_555 C A 5 1_555 B G 4 1_555 C G 4 1_555 0.615 -1.008 3.450 15.599 15.295 23.956 -4.616 1.756 2.396 30.049 -30.646 32.314 1 RR_U3G4:G4A5_SS R 3 ? S 5 ? R 4 ? S 4 ? 1 B G 4 1_555 C G 4 1_555 B A 5 1_555 C U 3 1_555 -0.965 -1.449 3.187 -19.261 14.036 32.534 -3.680 -0.746 2.559 21.787 29.898 40.138 2 RR_G4A5:U3G4_SS R 4 ? S 4 ? R 5 ? S 3 ? 1 B A 5 1_555 C U 3 1_555 B C 6 1_555 C G 2 1_555 1.090 -2.833 3.079 8.086 6.957 31.630 -5.972 -0.698 2.607 12.333 -14.334 33.337 3 RR_A5C6:G2U3_SS R 5 ? S 3 ? R 6 ? S 2 ? # _pdbx_audit_support.funding_organization 'Other private' _pdbx_audit_support.country ? _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1SI3 _pdbx_initial_refinement_model.details 'Protein model used' # _atom_sites.entry_id 8THQ _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 0.010877 _atom_sites.fract_transf_matrix[1][2] 0.006280 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012560 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014372 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O P S # loop_ #