HEADER DNA BINDING PROTEIN/DNA 20-JUL-23 8TIY TITLE ISORETICULAR, INTERPENETRATING CO-CRYSTAL OF REPLICATION INITIATOR TITLE 2 PROTEIN REPE54 AND SYMMETRICAL EXPANDED DUPLEX (31MER) CONTAINING THE TITLE 3 COGNATE REPE54 SEQUENCE AND AN ADDITIONAL G-C RICH SEQUENCE WITH 1 TITLE 4 STICKY BASES AND 3' TERMINAL PHOSPHATES AND CROSSLINKED WITH EDC. COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA(5'- COMPND 3 D(CP*CP*CP*GP*GP*AP*CP*CP*TP*GP*TP*GP*AP*CP*AP*AP*AP*TP*TP*GP*CP*CP*C COMPND 4 P*TP*CP*AP*GP*AP*CP*GP*GP*A)-')|; COMPND 5 CHAIN: A; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (5'- COMPND 9 D(GP*CP*CP*GP*TP*CP*TP*GP*AP*GP*GP*GP*CP*AP*AP*TP*TP*TP*GP*TP*CP*AP*C COMPND 10 P*AP*GP*GP*TP*CP*CP*GP*GP*A)-3'); COMPND 11 CHAIN: B; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: REPLICATION INITIATION PROTEIN; COMPND 15 CHAIN: C; COMPND 16 SYNONYM: PROTEIN E,PROTEIN REP,PROTEIN F4; COMPND 17 ENGINEERED: YES; COMPND 18 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 4 ORGANISM_TAXID: 562; SOURCE 5 MOL_ID: 2; SOURCE 6 SYNTHETIC: YES; SOURCE 7 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 8 ORGANISM_TAXID: 562; SOURCE 9 MOL_ID: 3; SOURCE 10 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI K-12; SOURCE 11 ORGANISM_TAXID: 83333; SOURCE 12 STRAIN: K-12; SOURCE 13 GENE: REPE, E, REP, ECOK12F045; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS REPLICATION INITIATOR REPE COMPLEX CO-CRYSTAL, DNA BINDING PROTEIN- KEYWDS 2 DNA COMPLEX, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.R.ORUN,E.T.SHIELDS,R.SHRESTHA,C.K.SLAUGHTER,C.D.SNOW REVDAT 3 14-AUG-24 8TIY 1 JRNL REVDAT 2 22-MAY-24 8TIY 1 REMARK REVDAT 1 02-AUG-23 8TIY 0 JRNL AUTH A.R.ORUN,C.K.SLAUGHTER,E.T.SHIELDS,A.VAJAPAYAJULA,S.JONES, JRNL AUTH 2 R.SHRESTHA,C.D.SNOW JRNL TITL TUNING CHEMICAL DNA LIGATION WITHIN DNA CRYSTALS AND JRNL TITL 2 PROTEIN-DNA CO-CRYSTALS JRNL REF ACS NANOSCI AU 2024 JRNL REFN ESSN 2694-2496 JRNL DOI 10.1021/ACSNANOSCIENCEAU.4C00013 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH P.V.AFONINE,R.W.GROSSE-KUNSTLEVE,N.ECHOLS,J.J.HEADD, REMARK 1 AUTH 2 N.W.MORIARTY,M.MUSTYAKIMOV,T.C.TERWILLIGER,A.URZHUMTSEV, REMARK 1 AUTH 3 P.H.ZWART,P.D.ADAMS REMARK 1 TITL TOWARDS AUTOMATED CRYSTALLOGRAPHIC STRUCTURE REFINEMENT WITH REMARK 1 TITL 2 PHENIX.REFINE. REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 68 352 2012 REMARK 1 REFN ESSN 1399-0047 REMARK 1 PMID 22505256 REMARK 1 DOI 10.1107/S0907444912001308 REMARK 1 REFERENCE 2 REMARK 1 AUTH D.LIEBSCHNER,P.V.AFONINE,M.L.BAKER,G.BUNKOCZI,V.B.CHEN, REMARK 1 AUTH 2 T.I.CROLL,B.HINTZE,L.W.HUNG,S.JAIN,A.J.MCCOY,N.W.MORIARTY, REMARK 1 AUTH 3 R.D.OEFFNER,B.K.POON,M.G.PRISANT,R.J.READ,J.S.RICHARDSON, REMARK 1 AUTH 4 D.C.RICHARDSON,M.D.SAMMITO,O.V.SOBOLEV,D.H.STOCKWELL, REMARK 1 AUTH 5 T.C.TERWILLIGER,A.G.URZHUMTSEV,L.L.VIDEAU,C.J.WILLIAMS, REMARK 1 AUTH 6 P.D.ADAMS REMARK 1 TITL MACROMOLECULAR STRUCTURE DETERMINATION USING X-RAYS, REMARK 1 TITL 2 NEUTRONS AND ELECTRONS: RECENT DEVELOPMENTS IN PHENIX. REMARK 1 REF ACTA CRYSTALLOGR D STRUCT V. 75 861 2019 REMARK 1 REF 2 BIOL REMARK 1 REFN ISSN 2059-7983 REMARK 1 PMID 31588918 REMARK 1 DOI 10.1107/S2059798319011471 REMARK 2 REMARK 2 RESOLUTION. 3.11 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.11 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.82 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 3 NUMBER OF REFLECTIONS : 11634 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1163 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.8200 - 6.2100 0.92 1319 148 0.1825 0.1902 REMARK 3 2 6.2100 - 4.9300 0.99 1350 153 0.1899 0.2293 REMARK 3 3 4.9300 - 4.3100 0.98 1340 147 0.1850 0.2009 REMARK 3 4 4.3100 - 3.9200 0.96 1278 144 0.2111 0.2634 REMARK 3 5 3.9200 - 3.6400 0.98 1333 149 0.2350 0.2793 REMARK 3 6 3.6400 - 3.4200 0.96 1286 142 0.2566 0.2897 REMARK 3 7 3.4200 - 3.2500 0.96 1272 139 0.2503 0.2885 REMARK 3 8 3.2500 - 3.1100 0.96 1293 141 0.2922 0.3406 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.316 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.537 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 96.33 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 128.1 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 3239 REMARK 3 ANGLE : 1.350 4647 REMARK 3 CHIRALITY : 0.083 506 REMARK 3 PLANARITY : 0.011 376 REMARK 3 DIHEDRAL : 27.386 860 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 16 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.2282 -7.9029 1.5420 REMARK 3 T TENSOR REMARK 3 T11: 1.4950 T22: 1.1076 REMARK 3 T33: 1.1868 T12: 0.0384 REMARK 3 T13: 0.2378 T23: -0.2720 REMARK 3 L TENSOR REMARK 3 L11: 0.8541 L22: 0.3900 REMARK 3 L33: -0.0192 L12: 0.3740 REMARK 3 L13: 0.5842 L23: 0.8168 REMARK 3 S TENSOR REMARK 3 S11: 0.0801 S12: -0.1320 S13: 0.6948 REMARK 3 S21: 0.0339 S22: -0.0364 S23: -0.4189 REMARK 3 S31: -0.7378 S32: -0.8993 S33: 0.0021 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 17 THROUGH 32 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.1088 -40.0648 -30.5378 REMARK 3 T TENSOR REMARK 3 T11: 2.1027 T22: 1.7176 REMARK 3 T33: 1.2575 T12: -0.0852 REMARK 3 T13: 0.6437 T23: -0.6495 REMARK 3 L TENSOR REMARK 3 L11: 0.2122 L22: -0.2314 REMARK 3 L33: 1.0263 L12: -0.3237 REMARK 3 L13: 0.7508 L23: -0.1477 REMARK 3 S TENSOR REMARK 3 S11: 0.4811 S12: 1.0331 S13: -0.1383 REMARK 3 S21: -1.2294 S22: -0.0629 S23: -0.6453 REMARK 3 S31: 0.4216 S32: -0.2503 S33: 1.1200 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 3 THROUGH 17 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.7811 -41.5344 -34.3785 REMARK 3 T TENSOR REMARK 3 T11: 2.3518 T22: 1.9344 REMARK 3 T33: 1.7738 T12: 0.3819 REMARK 3 T13: 0.6692 T23: -0.5844 REMARK 3 L TENSOR REMARK 3 L11: 0.2033 L22: 0.3235 REMARK 3 L33: 0.0515 L12: 0.3273 REMARK 3 L13: -0.2432 L23: -0.1095 REMARK 3 S TENSOR REMARK 3 S11: 1.7330 S12: 1.7247 S13: 0.3629 REMARK 3 S21: -1.9589 S22: -0.8051 S23: -0.7085 REMARK 3 S31: -0.4504 S32: 0.0263 S33: 0.0846 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 18 THROUGH 33 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.7166 -11.5374 -0.3391 REMARK 3 T TENSOR REMARK 3 T11: 1.0817 T22: 0.9016 REMARK 3 T33: 0.9154 T12: -0.0992 REMARK 3 T13: 0.2865 T23: -0.4166 REMARK 3 L TENSOR REMARK 3 L11: 1.8073 L22: 4.7125 REMARK 3 L33: 1.0426 L12: -1.0006 REMARK 3 L13: 1.1511 L23: -3.3568 REMARK 3 S TENSOR REMARK 3 S11: -0.4507 S12: -0.4154 S13: 1.1452 REMARK 3 S21: 0.6546 S22: 0.7397 S23: -0.3960 REMARK 3 S31: -0.8324 S32: -0.0228 S33: -0.0776 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 15 THROUGH 89 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.6676 -47.2578 -14.8357 REMARK 3 T TENSOR REMARK 3 T11: 1.1288 T22: 1.0030 REMARK 3 T33: 1.2518 T12: -0.0477 REMARK 3 T13: 0.2635 T23: -0.4196 REMARK 3 L TENSOR REMARK 3 L11: 2.4993 L22: 2.1463 REMARK 3 L33: 1.1497 L12: -1.2230 REMARK 3 L13: 1.2562 L23: 0.0050 REMARK 3 S TENSOR REMARK 3 S11: -0.1183 S12: 0.7337 S13: -0.9126 REMARK 3 S21: -1.0346 S22: 0.0759 S23: 0.3123 REMARK 3 S31: 0.6396 S32: -0.0190 S33: 0.0002 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 90 THROUGH 132 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.3267 -48.5528 -6.3664 REMARK 3 T TENSOR REMARK 3 T11: 0.6846 T22: 0.7966 REMARK 3 T33: 1.4079 T12: -0.0613 REMARK 3 T13: 0.3670 T23: -0.2896 REMARK 3 L TENSOR REMARK 3 L11: 2.8751 L22: 1.7233 REMARK 3 L33: 3.3043 L12: 0.1516 REMARK 3 L13: 1.5290 L23: -1.3576 REMARK 3 S TENSOR REMARK 3 S11: -0.3240 S12: -0.5403 S13: -1.3514 REMARK 3 S21: 0.1414 S22: 0.2330 S23: -0.3345 REMARK 3 S31: 1.0129 S32: 0.3570 S33: 1.1390 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 133 THROUGH 208 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.2198 -38.2374 -5.5151 REMARK 3 T TENSOR REMARK 3 T11: 0.4751 T22: 0.8418 REMARK 3 T33: 1.0568 T12: -0.1827 REMARK 3 T13: 0.1778 T23: -0.2335 REMARK 3 L TENSOR REMARK 3 L11: 2.6349 L22: 2.7255 REMARK 3 L33: 1.4934 L12: -1.2552 REMARK 3 L13: -0.2761 L23: -2.1779 REMARK 3 S TENSOR REMARK 3 S11: -0.3030 S12: 0.0031 S13: -0.8716 REMARK 3 S21: -0.8039 S22: 0.1823 S23: 0.0333 REMARK 3 S31: -0.0807 S32: -0.2472 S33: -0.0447 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 209 THROUGH 245 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.7383 -30.8512 -7.8226 REMARK 3 T TENSOR REMARK 3 T11: 0.7556 T22: 0.9618 REMARK 3 T33: 1.0665 T12: -0.0816 REMARK 3 T13: 0.0437 T23: -0.1714 REMARK 3 L TENSOR REMARK 3 L11: 1.2782 L22: 1.3486 REMARK 3 L33: 1.2267 L12: -0.2167 REMARK 3 L13: -0.7532 L23: -1.3688 REMARK 3 S TENSOR REMARK 3 S11: 0.2275 S12: 0.1672 S13: -0.2225 REMARK 3 S21: -0.7798 S22: 0.0824 S23: 0.9595 REMARK 3 S31: -0.4659 S32: -1.3249 S33: -0.0001 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8TIY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-JUL-23. REMARK 100 THE DEPOSITION ID IS D_1000273287. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-NOV-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 4.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SI (111) DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CMOS REMARK 200 DETECTOR MANUFACTURER : RDI CMOS_8M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS JAN 31, 2020 REMARK 200 DATA SCALING SOFTWARE : XSCALE JAN 31, 2020, SCALA REMARK 200 3.3.22 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11893 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.110 REMARK 200 RESOLUTION RANGE LOW (A) : 36.820 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.07340 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.11 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.22 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.8 REMARK 200 DATA REDUNDANCY IN SHELL : 7.40 REMARK 200 R MERGE FOR SHELL (I) : 0.91380 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.2 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 350 MM MGCL2, 25% PEG 400, AND 100 MM REMARK 280 TRIS HCL, PH 8.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 36.82200 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 64.16400 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 68.61050 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 36.82200 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 64.16400 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 68.61050 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 36.82200 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 64.16400 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 68.61050 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 36.82200 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 64.16400 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 68.61050 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET C -11 REMARK 465 ARG C -10 REMARK 465 GLY C -9 REMARK 465 SER C -8 REMARK 465 HIS C -7 REMARK 465 HIS C -6 REMARK 465 HIS C -5 REMARK 465 HIS C -4 REMARK 465 HIS C -3 REMARK 465 HIS C -2 REMARK 465 GLY C -1 REMARK 465 SER C 0 REMARK 465 MET C 1 REMARK 465 ALA C 2 REMARK 465 GLU C 3 REMARK 465 THR C 4 REMARK 465 ALA C 5 REMARK 465 VAL C 6 REMARK 465 ILE C 7 REMARK 465 ASN C 8 REMARK 465 HIS C 9 REMARK 465 LYS C 10 REMARK 465 LYS C 11 REMARK 465 ARG C 12 REMARK 465 LYS C 13 REMARK 465 ASN C 14 REMARK 465 ASP C 50 REMARK 465 GLY C 51 REMARK 465 THR C 52 REMARK 465 LEU C 53 REMARK 465 GLN C 54 REMARK 465 GLU C 55 REMARK 465 HIS C 56 REMARK 465 ARG C 98 REMARK 465 PRO C 99 REMARK 465 GLU C 100 REMARK 465 GLU C 101 REMARK 465 ASP C 102 REMARK 465 ALA C 103 REMARK 465 GLY C 104 REMARK 465 ASP C 105 REMARK 465 GLU C 106 REMARK 465 LYS C 107 REMARK 465 GLY C 108 REMARK 465 LEU C 142 REMARK 465 GLN C 143 REMARK 465 ASN C 144 REMARK 465 THR C 246 REMARK 465 SER C 247 REMARK 465 MET C 248 REMARK 465 THR C 249 REMARK 465 THR C 250 REMARK 465 GLY C 251 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 DA A 33 C5' C4' O4' C3' O3' C2' C1' REMARK 470 DA A 33 N9 C8 N7 C5 C6 N6 N1 REMARK 470 DA A 33 C2 N3 C4 REMARK 470 DA B 34 C5' C4' O4' C3' O3' C2' C1' REMARK 470 DA B 34 N9 C8 N7 C5 C6 N6 N1 REMARK 470 DA B 34 C2 N3 C4 REMARK 470 ARG C 17 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 117 CE NZ REMARK 470 ARG C 145 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DC B 5 O3' DC B 5 C3' -0.040 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC A 15 O4' - C1' - N1 ANGL. DEV. = 2.6 DEGREES REMARK 500 DC A 22 O4' - C1' - N1 ANGL. DEV. = 3.4 DEGREES REMARK 500 DT A 25 O4' - C1' - N1 ANGL. DEV. = 2.2 DEGREES REMARK 500 DC A 26 O4' - C1' - N1 ANGL. DEV. = 2.8 DEGREES REMARK 500 DG B 12 O4' - C1' - N9 ANGL. DEV. = 2.9 DEGREES REMARK 500 DG B 14 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES REMARK 500 DA B 16 O4' - C1' - N9 ANGL. DEV. = -4.3 DEGREES REMARK 500 DC B 23 O4' - C1' - N1 ANGL. DEV. = 2.7 DEGREES REMARK 500 DC B 25 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 DG B 27 O3' - P - OP2 ANGL. DEV. = 6.8 DEGREES REMARK 500 DG B 28 O3' - P - OP2 ANGL. DEV. = 6.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN C 132 109.58 -50.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 101 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 101 O REMARK 620 2 HOH A 102 O 65.3 REMARK 620 3 DG B 27 OP1 121.5 127.8 REMARK 620 4 HOH B 201 O 94.3 69.7 58.5 REMARK 620 5 HOH B 202 O 139.5 75.6 75.0 61.3 REMARK 620 6 HOH B 203 O 112.9 75.3 125.6 120.2 64.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU C 77 OE2 REMARK 620 2 ASP C 81 OD1 84.2 REMARK 620 N 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7U6K RELATED DB: PDB REMARK 900 ALSO A DESIGNED INTERPENTRATING, ISORETICULAR CO-CRYSTAL OF REPE54 REMARK 900 INITIATOR PROTEIN AND 31MER DNA DBREF 8TIY A 2 33 PDB 8TIY 8TIY 2 33 DBREF 8TIY B 3 34 PDB 8TIY 8TIY 3 34 DBREF 8TIY C 1 251 UNP P03856 REPE1_ECOLI 1 251 SEQADV 8TIY MET C -11 UNP P03856 INITIATING METHIONINE SEQADV 8TIY ARG C -10 UNP P03856 EXPRESSION TAG SEQADV 8TIY GLY C -9 UNP P03856 EXPRESSION TAG SEQADV 8TIY SER C -8 UNP P03856 EXPRESSION TAG SEQADV 8TIY HIS C -7 UNP P03856 EXPRESSION TAG SEQADV 8TIY HIS C -6 UNP P03856 EXPRESSION TAG SEQADV 8TIY HIS C -5 UNP P03856 EXPRESSION TAG SEQADV 8TIY HIS C -4 UNP P03856 EXPRESSION TAG SEQADV 8TIY HIS C -3 UNP P03856 EXPRESSION TAG SEQADV 8TIY HIS C -2 UNP P03856 EXPRESSION TAG SEQADV 8TIY GLY C -1 UNP P03856 EXPRESSION TAG SEQADV 8TIY SER C 0 UNP P03856 EXPRESSION TAG SEQADV 8TIY PRO C 118 UNP P03856 ARG 118 ENGINEERED MUTATION SEQRES 1 A 32 DC DC DC DG DG DA DC DC DT DG DT DG DA SEQRES 2 A 32 DC DA DA DA DT DT DG DC DC DC DT DC DA SEQRES 3 A 32 DG DA DC DG DG DA SEQRES 1 B 32 DG DC DC DG DT DC DT DG DA DG DG DG DC SEQRES 2 B 32 DA DA DT DT DT DG DT DC DA DC DA DG DG SEQRES 3 B 32 DT DC DC DG DG DA SEQRES 1 C 263 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER MET SEQRES 2 C 263 ALA GLU THR ALA VAL ILE ASN HIS LYS LYS ARG LYS ASN SEQRES 3 C 263 SER PRO ARG ILE VAL GLN SER ASN ASP LEU THR GLU ALA SEQRES 4 C 263 ALA TYR SER LEU SER ARG ASP GLN LYS ARG MET LEU TYR SEQRES 5 C 263 LEU PHE VAL ASP GLN ILE ARG LYS SER ASP GLY THR LEU SEQRES 6 C 263 GLN GLU HIS ASP GLY ILE CYS GLU ILE HIS VAL ALA LYS SEQRES 7 C 263 TYR ALA GLU ILE PHE GLY LEU THR SER ALA GLU ALA SER SEQRES 8 C 263 LYS ASP ILE ARG GLN ALA LEU LYS SER PHE ALA GLY LYS SEQRES 9 C 263 GLU VAL VAL PHE TYR ARG PRO GLU GLU ASP ALA GLY ASP SEQRES 10 C 263 GLU LYS GLY TYR GLU SER PHE PRO TRP PHE ILE LYS PRO SEQRES 11 C 263 ALA HIS SER PRO SER ARG GLY LEU TYR SER VAL HIS ILE SEQRES 12 C 263 ASN PRO TYR LEU ILE PRO PHE PHE ILE GLY LEU GLN ASN SEQRES 13 C 263 ARG PHE THR GLN PHE ARG LEU SER GLU THR LYS GLU ILE SEQRES 14 C 263 THR ASN PRO TYR ALA MET ARG LEU TYR GLU SER LEU CYS SEQRES 15 C 263 GLN TYR ARG LYS PRO ASP GLY SER GLY ILE VAL SER LEU SEQRES 16 C 263 LYS ILE ASP TRP ILE ILE GLU ARG TYR GLN LEU PRO GLN SEQRES 17 C 263 SER TYR GLN ARG MET PRO ASP PHE ARG ARG ARG PHE LEU SEQRES 18 C 263 GLN VAL CYS VAL ASN GLU ILE ASN SER ARG THR PRO MET SEQRES 19 C 263 ARG LEU SER TYR ILE GLU LYS LYS LYS GLY ARG GLN THR SEQRES 20 C 263 THR HIS ILE VAL PHE SER PHE ARG ASP ILE THR SER MET SEQRES 21 C 263 THR THR GLY HET MG B 101 1 HET MG B 102 1 HET MG C 301 1 HETNAM MG MAGNESIUM ION FORMUL 4 MG 3(MG 2+) FORMUL 7 HOH *5(H2 O) HELIX 1 AA1 ASN C 22 GLU C 26 1 5 HELIX 2 AA2 SER C 32 LYS C 48 1 17 HELIX 3 AA3 VAL C 64 PHE C 71 1 8 HELIX 4 AA4 THR C 74 SER C 88 1 15 HELIX 5 AA5 LEU C 135 ILE C 140 1 6 HELIX 6 AA6 SER C 152 THR C 154 5 3 HELIX 7 AA7 ASN C 159 GLN C 171 1 13 HELIX 8 AA8 ILE C 185 GLN C 193 1 9 HELIX 9 AA9 PRO C 195 GLN C 199 5 5 HELIX 10 AB1 ARG C 200 PHE C 208 1 9 HELIX 11 AB2 PHE C 208 THR C 220 1 13 SHEET 1 AA1 2 ARG C 17 SER C 21 0 SHEET 2 AA1 2 PHE C 146 ARG C 150 -1 O THR C 147 N GLN C 20 SHEET 1 AA2 3 ILE C 59 HIS C 63 0 SHEET 2 AA2 3 LEU C 126 ILE C 131 -1 O VAL C 129 N CYS C 60 SHEET 3 AA2 3 PHE C 115 HIS C 120 -1 N HIS C 120 O SER C 128 SHEET 1 AA3 2 GLU C 93 PHE C 96 0 SHEET 2 AA3 2 GLU C 110 PRO C 113 -1 O PHE C 112 N VAL C 94 SHEET 1 AA4 3 GLY C 179 LYS C 184 0 SHEET 2 AA4 3 GLN C 234 ASP C 244 -1 O ILE C 238 N LEU C 183 SHEET 3 AA4 3 MET C 222 LYS C 231 -1 N LYS C 231 O GLN C 234 LINK O HOH A 101 MG MG B 101 4555 1555 2.41 LINK O HOH A 102 MG MG B 101 4555 1555 2.50 LINK OP1 DG B 27 MG MG B 101 1555 1555 2.12 LINK OP2 DG B 27 MG MG B 102 1555 4555 2.37 LINK MG MG B 101 O HOH B 201 1555 1555 2.43 LINK MG MG B 101 O HOH B 202 1555 1555 2.29 LINK MG MG B 101 O HOH B 203 1555 4555 2.65 LINK OE2 GLU C 77 MG MG C 301 1555 1555 2.50 LINK OD1 ASP C 81 MG MG C 301 1555 1555 2.36 CRYST1 73.644 128.328 137.221 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013579 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007793 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007288 0.00000