HEADER VIRAL PROTEIN 20-JUL-23 8TJ7 TITLE CRYSTAL STRUCTURE OF THE A/SHANDONG/9/1993(H3N2) INFLUENZA VIRUS TITLE 2 HEMAGGLUTININ WITH HUMAN RECEPTOR ANALOG 6'-SLNLN COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEMAGGLUTININ HA1 CHAIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: HEMAGGLUTININ HA2 CHAIN; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS; SOURCE 3 ORGANISM_TAXID: 1144025; SOURCE 4 STRAIN: A/SHANDONG/9/1993(H3N2); SOURCE 5 GENE: HA; SOURCE 6 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS; SOURCE 10 ORGANISM_TAXID: 1144025; SOURCE 11 STRAIN: A/SHANDONG/9/1993(H3N2); SOURCE 12 GENE: HA; SOURCE 13 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 7111 KEYWDS INFLUENZA, HEMAGGLUTININ, RECEPTOR, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR N.C.WU,X.ZHU,I.A.WILSON REVDAT 2 28-FEB-24 8TJ7 1 JRNL REVDAT 1 14-FEB-24 8TJ7 0 JRNL AUTH A.J.THOMPSON,N.C.WU,A.CANALES,C.KIKUCHI,X.ZHU,B.F.DE TORO, JRNL AUTH 2 F.J.CANADA,C.WORTH,S.WANG,R.MCBRIDE,W.PENG,C.M.NYCHOLAT, JRNL AUTH 3 J.JIMENEZ-BARBERO,I.A.WILSON,J.C.PAULSON JRNL TITL EVOLUTION OF HUMAN H3N2 INFLUENZA VIRUS RECEPTOR SPECIFICITY JRNL TITL 2 HAS SUBSTANTIALLY EXPANDED THE RECEPTOR-BINDING DOMAIN SITE. JRNL REF CELL HOST MICROBE V. 32 261 2024 JRNL REFN ESSN 1934-6069 JRNL PMID 38307019 JRNL DOI 10.1016/J.CHOM.2024.01.003 REMARK 2 REMARK 2 RESOLUTION. 2.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.25 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.960 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 22774 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.251 REMARK 3 R VALUE (WORKING SET) : 0.245 REMARK 3 FREE R VALUE : 0.274 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.110 REMARK 3 FREE R VALUE TEST SET COUNT : 1164 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.2500 - 5.6900 1.00 2716 144 0.2146 0.2154 REMARK 3 2 5.6800 - 4.5100 1.00 2699 160 0.1854 0.2200 REMARK 3 3 4.5100 - 3.9500 0.98 2619 167 0.2212 0.2318 REMARK 3 4 3.9400 - 3.5800 0.99 2749 131 0.2874 0.3595 REMARK 3 5 3.5800 - 3.3300 1.00 2679 154 0.2741 0.3102 REMARK 3 6 3.3300 - 3.1300 1.00 2685 143 0.2994 0.3624 REMARK 3 7 3.1300 - 2.9800 1.00 2721 126 0.2875 0.2825 REMARK 3 8 2.9700 - 2.8500 0.99 2742 139 0.3126 0.3940 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.360 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.030 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 4176 REMARK 3 ANGLE : 1.154 5654 REMARK 3 CHIRALITY : 0.067 658 REMARK 3 PLANARITY : 0.007 715 REMARK 3 DIHEDRAL : 9.584 645 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 9 THROUGH 65 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.5284 -13.5997 60.7641 REMARK 3 T TENSOR REMARK 3 T11: 0.2448 T22: 0.3632 REMARK 3 T33: 0.3245 T12: -0.2556 REMARK 3 T13: 0.0285 T23: 0.0347 REMARK 3 L TENSOR REMARK 3 L11: 0.5046 L22: 0.6867 REMARK 3 L33: 2.5499 L12: -0.0407 REMARK 3 L13: 0.9675 L23: 0.2586 REMARK 3 S TENSOR REMARK 3 S11: -0.3255 S12: 0.0168 S13: -0.2034 REMARK 3 S21: 0.1941 S22: 0.1704 S23: 0.1101 REMARK 3 S31: 0.5097 S32: -0.2255 S33: -0.1369 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 66 THROUGH 269 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.4473 -1.5122 11.2751 REMARK 3 T TENSOR REMARK 3 T11: 0.2206 T22: 0.3267 REMARK 3 T33: 0.3005 T12: -0.0637 REMARK 3 T13: -0.0695 T23: 0.0108 REMARK 3 L TENSOR REMARK 3 L11: 1.0957 L22: 1.1422 REMARK 3 L33: 1.6896 L12: -0.0976 REMARK 3 L13: -0.1721 L23: -0.3686 REMARK 3 S TENSOR REMARK 3 S11: 0.0241 S12: 0.2161 S13: 0.0321 REMARK 3 S21: -0.1936 S22: 0.0322 S23: 0.0218 REMARK 3 S31: 0.0185 S32: -0.3775 S33: -0.0413 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 270 THROUGH 325 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.6829 -11.5395 51.8390 REMARK 3 T TENSOR REMARK 3 T11: 0.2580 T22: 0.2343 REMARK 3 T33: 0.2843 T12: -0.0684 REMARK 3 T13: 0.0250 T23: 0.0165 REMARK 3 L TENSOR REMARK 3 L11: 1.0965 L22: 0.4964 REMARK 3 L33: 2.5222 L12: 0.0236 REMARK 3 L13: 0.5019 L23: 0.0883 REMARK 3 S TENSOR REMARK 3 S11: -0.0920 S12: 0.1446 S13: -0.0944 REMARK 3 S21: 0.0137 S22: 0.1177 S23: 0.2472 REMARK 3 S31: 0.3832 S32: -0.3824 S33: -0.0105 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 22 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.2665 -13.0307 83.9153 REMARK 3 T TENSOR REMARK 3 T11: 0.3985 T22: 0.2997 REMARK 3 T33: 0.2697 T12: -0.0354 REMARK 3 T13: 0.0876 T23: 0.0333 REMARK 3 L TENSOR REMARK 3 L11: 3.3652 L22: 2.3086 REMARK 3 L33: 2.2779 L12: 0.3628 REMARK 3 L13: 0.6734 L23: 0.0439 REMARK 3 S TENSOR REMARK 3 S11: -0.0021 S12: -0.2654 S13: -0.0786 REMARK 3 S21: 0.0577 S22: -0.0450 S23: 0.2268 REMARK 3 S31: 0.5405 S32: -0.0961 S33: -0.0259 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 23 THROUGH 55 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.5941 -7.2372 83.2713 REMARK 3 T TENSOR REMARK 3 T11: 0.2001 T22: 0.4008 REMARK 3 T33: 0.3345 T12: -0.0605 REMARK 3 T13: 0.0543 T23: -0.0095 REMARK 3 L TENSOR REMARK 3 L11: 1.6096 L22: 1.1858 REMARK 3 L33: 1.0990 L12: -0.1474 REMARK 3 L13: -0.8009 L23: 0.5437 REMARK 3 S TENSOR REMARK 3 S11: -0.0279 S12: -0.0322 S13: -0.1331 REMARK 3 S21: 0.1590 S22: -0.2967 S23: 0.2164 REMARK 3 S31: 0.0977 S32: -0.5611 S33: 0.2376 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 56 THROUGH 65 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.8736 0.3310 46.5723 REMARK 3 T TENSOR REMARK 3 T11: 0.5668 T22: 0.7060 REMARK 3 T33: 0.7009 T12: -0.0552 REMARK 3 T13: -0.1235 T23: -0.1969 REMARK 3 L TENSOR REMARK 3 L11: -0.0022 L22: 0.0044 REMARK 3 L33: 0.0054 L12: 0.0002 REMARK 3 L13: -0.0002 L23: 0.0039 REMARK 3 S TENSOR REMARK 3 S11: -0.2232 S12: 0.0654 S13: -0.1011 REMARK 3 S21: 0.0596 S22: 0.2458 S23: 0.1606 REMARK 3 S31: 0.1676 S32: 0.0471 S33: -0.0014 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 66 THROUGH 173 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.7070 -5.3688 78.1742 REMARK 3 T TENSOR REMARK 3 T11: 0.2466 T22: 0.1656 REMARK 3 T33: 0.2073 T12: -0.0312 REMARK 3 T13: 0.0677 T23: 0.0138 REMARK 3 L TENSOR REMARK 3 L11: 0.6754 L22: 0.3960 REMARK 3 L33: 1.4659 L12: -0.1848 REMARK 3 L13: -0.2408 L23: -0.1290 REMARK 3 S TENSOR REMARK 3 S11: -0.1820 S12: -0.1815 S13: -0.0520 REMARK 3 S21: 0.1783 S22: -0.0147 S23: 0.0679 REMARK 3 S31: 0.4035 S32: -0.0308 S33: 0.1627 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8TJ7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-AUG-23. REMARK 100 THE DEPOSITION ID IS D_1000276038. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-SEP-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97741 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22883 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.850 REMARK 200 RESOLUTION RANGE LOW (A) : 33.250 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.17000 REMARK 200 FOR THE DATA SET : 8.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.92000 REMARK 200 FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 72.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 40% PEG-400 AND 0.1 M IMIDAZOLE PH REMARK 280 8.0, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 49.16450 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 28.38514 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 90.25667 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 49.16450 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 28.38514 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 90.25667 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 49.16450 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 28.38514 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 90.25667 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 56.77027 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 180.51333 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 56.77027 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 180.51333 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 56.77027 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 180.51333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 47220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 58630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 33.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 7 REMARK 465 ASP A 8 REMARK 465 LYS A 326 REMARK 465 GLN A 327 REMARK 465 THR A 328 REMARK 465 ARG A 329 REMARK 465 LYS B 174 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 22 69.55 -115.90 REMARK 500 LYS A 62 -122.79 54.31 REMARK 500 ASN A 96 40.17 -146.11 REMARK 500 CYS A 97 -152.27 -128.80 REMARK 500 SER A 146 -153.85 -147.77 REMARK 500 VAL A 196 -71.72 69.82 REMARK 500 ALA B 5 -72.81 -73.95 REMARK 500 ALA B 7 27.84 46.17 REMARK 500 GLU B 11 -52.14 -28.52 REMARK 500 PHE B 63 -77.73 -121.89 REMARK 500 GLN B 65 -132.72 -116.40 REMARK 500 ARG B 127 -128.26 57.11 REMARK 500 TYR B 141 32.09 -90.63 REMARK 500 PHE B 171 69.88 -110.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 NAG G 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8TJ6 RELATED DB: PDB REMARK 900 PDB ENTRIES FOR THE SAME CITATION DBREF 8TJ7 A 11 329 UNP B8K0N5 B8K0N5_9INFA 27 345 DBREF 8TJ7 B 1 174 UNP B8K0N5 B8K0N5_9INFA 346 519 SEQADV 8TJ7 ALA A 7 UNP B8K0N5 EXPRESSION TAG SEQADV 8TJ7 ASP A 8 UNP B8K0N5 EXPRESSION TAG SEQADV 8TJ7 PRO A 9 UNP B8K0N5 EXPRESSION TAG SEQADV 8TJ7 GLY A 10 UNP B8K0N5 EXPRESSION TAG SEQADV 8TJ7 ASN A 246 UNP B8K0N5 ASP 262 CONFLICT SEQRES 1 A 323 ALA ASP PRO GLY ALA THR LEU CYS LEU GLY HIS HIS ALA SEQRES 2 A 323 VAL PRO ASN GLY THR LEU VAL LYS THR ILE THR ASN ASP SEQRES 3 A 323 GLN ILE GLU VAL THR ASN ALA THR GLU LEU VAL GLN SER SEQRES 4 A 323 SER SER THR GLY ARG ILE CYS GLY SER PRO HIS ARG ILE SEQRES 5 A 323 LEU ASP GLY LYS ASN CYS THR LEU ILE ASP ALA LEU LEU SEQRES 6 A 323 GLY ASP PRO HIS CYS ASP GLY PHE GLN ASN LYS GLU TRP SEQRES 7 A 323 ASP LEU PHE VAL GLU ARG SER LYS ALA TYR SER ASN CYS SEQRES 8 A 323 TYR PRO TYR ASP VAL PRO ASP TYR ALA SER LEU ARG SER SEQRES 9 A 323 LEU VAL ALA SER SER GLY THR LEU GLU PHE ILE ASN GLU SEQRES 10 A 323 ASP PHE ASN TRP THR GLY VAL ALA GLN ASP GLY GLY SER SEQRES 11 A 323 TYR ALA CYS LYS ARG GLY SER VAL ASN SER PHE PHE SER SEQRES 12 A 323 ARG LEU ASN TRP LEU HIS LYS LEU GLU TYR LYS TYR PRO SEQRES 13 A 323 ALA LEU ASN VAL THR MET PRO ASN ASN GLY LYS PHE ASP SEQRES 14 A 323 LYS LEU TYR ILE TRP GLY VAL HIS HIS PRO SER THR ASP SEQRES 15 A 323 SER ASP GLN THR SER LEU TYR VAL ARG ALA SER GLY ARG SEQRES 16 A 323 VAL THR VAL SER THR LYS ARG SER GLN GLN THR VAL THR SEQRES 17 A 323 PRO ASN ILE GLY SER ARG PRO TRP VAL ARG GLY GLN SER SEQRES 18 A 323 SER ARG ILE SER ILE TYR TRP THR ILE VAL LYS PRO GLY SEQRES 19 A 323 ASP ILE LEU LEU ILE ASN SER THR GLY ASN LEU ILE ALA SEQRES 20 A 323 PRO ARG GLY TYR PHE LYS ILE ARG ASN GLY LYS SER SER SEQRES 21 A 323 ILE MET ARG SER ASP ALA PRO ILE GLY ASN CYS SER SER SEQRES 22 A 323 GLU CYS ILE THR PRO ASN GLY SER ILE PRO ASN ASP LYS SEQRES 23 A 323 PRO PHE GLN ASN VAL ASN ARG ILE THR TYR GLY ALA CYS SEQRES 24 A 323 PRO ARG TYR VAL LYS GLN ASN THR LEU LYS LEU ALA THR SEQRES 25 A 323 GLY MET ARG ASN VAL PRO GLU LYS GLN THR ARG SEQRES 1 B 174 GLY ILE PHE GLY ALA ILE ALA GLY PHE ILE GLU ASN GLY SEQRES 2 B 174 TRP GLU GLY MET VAL ASP GLY TRP TYR GLY PHE ARG HIS SEQRES 3 B 174 GLN ASN SER GLU GLY THR GLY GLN ALA ALA ASP LEU LYS SEQRES 4 B 174 SER THR GLN ALA ALA ILE ASP GLN ILE ASN GLY LYS LEU SEQRES 5 B 174 ASN ARG LEU ILE GLU LYS THR ASN GLU LYS PHE GLN GLN SEQRES 6 B 174 ILE GLU LYS GLU PHE SER GLU VAL GLU GLY ARG ILE GLN SEQRES 7 B 174 ASP LEU GLU LYS TYR VAL GLU ASP THR LYS ILE ASP LEU SEQRES 8 B 174 TRP SER TYR ASN ALA GLU LEU LEU VAL ALA LEU GLU ASN SEQRES 9 B 174 GLN HIS THR ILE ASP LEU THR ASP SER GLU MET ASN LYS SEQRES 10 B 174 LEU PHE GLU LYS THR ARG LYS GLN LEU ARG GLU ASN ALA SEQRES 11 B 174 GLU ASP MET GLY ASN GLY CYS PHE LYS ILE TYR HIS LYS SEQRES 12 B 174 CYS ASP ASN ALA CYS ILE GLY SER ILE ARG ASN GLY THR SEQRES 13 B 174 TYR ASP HIS ASP VAL TYR ARG ASP GLU ALA LEU ASN ASN SEQRES 14 B 174 ARG PHE GLN ILE LYS HET NAG C 1 14 HET NAG C 2 14 HET BMA C 3 11 HET MAN C 4 11 HET MAN C 5 11 HET NAG D 1 14 HET NAG D 2 14 HET NAG E 1 14 HET NAG E 2 14 HET NAG F 1 14 HET NAG F 2 14 HET NAG G 1 14 HET GAL G 2 11 HET SIA G 3 20 HET NAG A 401 14 HET NAG A 402 14 HET NAG B 201 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM GAL BETA-D-GALACTOPYRANOSE HETNAM SIA N-ACETYL-ALPHA-NEURAMINIC ACID HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN GAL BETA-D-GALACTOSE; D-GALACTOSE; GALACTOSE HETSYN SIA N-ACETYLNEURAMINIC ACID; SIALIC ACID; ALPHA-SIALIC HETSYN 2 SIA ACID; O-SIALIC ACID FORMUL 3 NAG 12(C8 H15 N O6) FORMUL 3 BMA C6 H12 O6 FORMUL 3 MAN 2(C6 H12 O6) FORMUL 7 GAL C6 H12 O6 FORMUL 7 SIA C11 H19 N O9 FORMUL 11 HOH *19(H2 O) HELIX 1 AA1 THR A 65 GLY A 72 1 8 HELIX 2 AA2 ASP A 73 GLN A 80 5 8 HELIX 3 AA3 ASP A 104 GLY A 116 1 13 HELIX 4 AA4 THR A 187 VAL A 196 1 10 HELIX 5 AA5 ASP B 37 LEU B 55 1 19 HELIX 6 AA6 GLY B 75 ARG B 127 1 53 HELIX 7 AA7 ASP B 145 ASN B 154 1 10 HELIX 8 AA8 ASP B 158 PHE B 171 1 14 SHEET 1 AA1 5 GLY B 31 ALA B 36 0 SHEET 2 AA1 5 TYR B 22 ASN B 28 -1 N PHE B 24 O ALA B 35 SHEET 3 AA1 5 ALA A 11 HIS A 17 -1 N CYS A 14 O ARG B 25 SHEET 4 AA1 5 CYS B 137 ILE B 140 -1 O ILE B 140 N ALA A 11 SHEET 5 AA1 5 ALA B 130 ASP B 132 -1 N GLU B 131 O LYS B 139 SHEET 1 AA2 2 THR A 24 VAL A 26 0 SHEET 2 AA2 2 ILE A 34 VAL A 36 -1 O VAL A 36 N THR A 24 SHEET 1 AA3 2 ALA A 39 GLU A 41 0 SHEET 2 AA3 2 LYS A 315 ALA A 317 -1 O LEU A 316 N THR A 40 SHEET 1 AA4 3 VAL A 43 GLN A 44 0 SHEET 2 AA4 3 PHE A 294 GLN A 295 1 O PHE A 294 N GLN A 44 SHEET 3 AA4 3 ARG A 307 TYR A 308 1 O ARG A 307 N GLN A 295 SHEET 1 AA5 2 ILE A 51 SER A 54 0 SHEET 2 AA5 2 ILE A 274 SER A 278 1 O GLY A 275 N GLY A 53 SHEET 1 AA6 3 ILE A 58 ASP A 60 0 SHEET 2 AA6 3 LEU A 86 GLU A 89 1 O VAL A 88 N LEU A 59 SHEET 3 AA6 3 SER A 266 ARG A 269 1 O MET A 268 N PHE A 87 SHEET 1 AA7 5 TYR A 100 ASP A 101 0 SHEET 2 AA7 5 ARG A 229 VAL A 237 1 O ILE A 232 N ASP A 101 SHEET 3 AA7 5 LYS A 176 HIS A 184 -1 N TRP A 180 O TYR A 233 SHEET 4 AA7 5 GLY A 256 LYS A 259 -1 O PHE A 258 N LEU A 177 SHEET 5 AA7 5 PHE A 120 ASN A 122 -1 N ILE A 121 O TYR A 257 SHEET 1 AA8 5 TYR A 100 ASP A 101 0 SHEET 2 AA8 5 ARG A 229 VAL A 237 1 O ILE A 232 N ASP A 101 SHEET 3 AA8 5 LYS A 176 HIS A 184 -1 N TRP A 180 O TYR A 233 SHEET 4 AA8 5 LEU A 251 PRO A 254 -1 O ILE A 252 N GLY A 181 SHEET 5 AA8 5 LEU A 151 TRP A 153 -1 N ASN A 152 O ALA A 253 SHEET 1 AA9 2 SER A 136 ARG A 141 0 SHEET 2 AA9 2 VAL A 144 SER A 146 -1 O VAL A 144 N ARG A 141 SHEET 1 AB1 4 LEU A 164 PRO A 169 0 SHEET 2 AB1 4 ILE A 242 SER A 247 -1 O ILE A 245 N VAL A 166 SHEET 3 AB1 4 VAL A 202 SER A 205 -1 N THR A 203 O ASN A 246 SHEET 4 AB1 4 GLN A 210 VAL A 213 -1 O VAL A 213 N VAL A 202 SHEET 1 AB2 4 GLY A 286 ILE A 288 0 SHEET 2 AB2 4 CYS A 281 THR A 283 -1 N THR A 283 O GLY A 286 SHEET 3 AB2 4 TYR A 302 ALA A 304 -1 O TYR A 302 N ILE A 282 SHEET 4 AB2 4 GLU B 61 LYS B 62 -1 O LYS B 62 N GLY A 303 SSBOND 1 CYS A 14 CYS B 137 1555 1555 2.04 SSBOND 2 CYS A 52 CYS A 277 1555 1555 2.03 SSBOND 3 CYS A 64 CYS A 76 1555 1555 2.03 SSBOND 4 CYS A 97 CYS A 139 1555 1555 2.04 SSBOND 5 CYS A 281 CYS A 305 1555 1555 2.02 SSBOND 6 CYS B 144 CYS B 148 1555 1555 2.05 LINK ND2 ASN A 22 C1 NAG A 402 1555 1555 1.44 LINK ND2 ASN A 38 C1 NAG D 1 1555 1555 1.44 LINK ND2 ASN A 63 C1 NAG A 401 1555 1555 1.43 LINK ND2 ASN A 165 C1 NAG C 1 1555 1555 1.44 LINK ND2 ASN A 246 C1 NAG F 1 1555 1555 1.46 LINK ND2 ASN A 285 C1 NAG E 1 1555 1555 1.45 LINK ND2 ASN B 154 C1 NAG B 201 1555 1555 1.46 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.43 LINK O4 NAG C 2 C1 BMA C 3 1555 1555 1.45 LINK O3 BMA C 3 C1 MAN C 4 1555 1555 1.45 LINK O6 BMA C 3 C1 MAN C 5 1555 1555 1.45 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.46 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.45 LINK O4 NAG F 1 C1 NAG F 2 1555 1555 1.46 LINK O4 NAG G 1 C1 GAL G 2 1555 1555 1.42 LINK O6 GAL G 2 C2 SIA G 3 1555 1555 1.41 CISPEP 1 SER A 54 PRO A 55 0 0.93 CRYST1 98.329 98.329 270.770 90.00 90.00 120.00 H 3 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010170 0.005872 0.000000 0.00000 SCALE2 0.000000 0.011743 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003693 0.00000