data_8TKJ # _entry.id 8TKJ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.402 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8TKJ pdb_00008tkj 10.2210/pdb8tkj/pdb WWPDB D_1000275757 ? ? EMDB EMD-41353 ? ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2025-02-19 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8TKJ _pdbx_database_status.recvd_initial_deposition_date 2023-07-25 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type PDB '8T5O is the same RNA complexed with tetracycline' 8T5O unspecified PDB '8SYK is a truncation mutant of the same RNA complexed with tetracycline' 8SYK unspecified EMDB 'Cryo-EM structure of RNA device 43, apo state' EMD-41353 'associated EM volume' # _pdbx_contact_author.id 2 _pdbx_contact_author.email wangyunx@mail.nih.gov _pdbx_contact_author.name_first Yun-Xing _pdbx_contact_author.name_last Wang _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-2175-0148 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Stagno, J.R.' 1 0000-0002-6464-7829 'Deme, J.C.' 2 0000-0001-8811-9871 'Lee, Y.-T.' 3 0000-0001-8123-6207 'Wang, Y.-X.' 4 0000-0002-2175-0148 'Lea, S.M.' 5 0000-0001-9287-8053 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Cryo-EM structure of RNA device 43 truncation mutant, apo state' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Stagno, J.R.' 1 0000-0002-6464-7829 primary 'Deme, J.C.' 2 0000-0001-8811-9871 primary 'Lee, Y.-T.' 3 0000-0001-8123-6207 primary 'Wang, Y.-X.' 4 0000-0002-2175-0148 primary 'Lea, S.M.' 5 0000-0001-9287-8053 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'RNA Device 43' 40005.895 1 ? ? ? ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 8 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GUGAGGUGCAGGUACAUCCAGCUGAUGAGUCCCAAAUAGGACAAAAAGGGAGAGGUGAAGAAUACGACCACCUAGGCUCG AAAGAGCCUAAAACAUACCUUUCCUGGAUUCCACUGCUAUCCAC ; _entity_poly.pdbx_seq_one_letter_code_can ;GUGAGGUGCAGGUACAUCCAGCUGAUGAGUCCCAAAUAGGACAAAAAGGGAGAGGUGAAGAAUACGACCACCUAGGCUCG AAAGAGCCUAAAACAUACCUUUCCUGGAUUCCACUGCUAUCCAC ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name 'MAGNESIUM ION' _pdbx_entity_nonpoly.comp_id MG # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 U n 1 3 G n 1 4 A n 1 5 G n 1 6 G n 1 7 U n 1 8 G n 1 9 C n 1 10 A n 1 11 G n 1 12 G n 1 13 U n 1 14 A n 1 15 C n 1 16 A n 1 17 U n 1 18 C n 1 19 C n 1 20 A n 1 21 G n 1 22 C n 1 23 U n 1 24 G n 1 25 A n 1 26 U n 1 27 G n 1 28 A n 1 29 G n 1 30 U n 1 31 C n 1 32 C n 1 33 C n 1 34 A n 1 35 A n 1 36 A n 1 37 U n 1 38 A n 1 39 G n 1 40 G n 1 41 A n 1 42 C n 1 43 A n 1 44 A n 1 45 A n 1 46 A n 1 47 A n 1 48 G n 1 49 G n 1 50 G n 1 51 A n 1 52 G n 1 53 A n 1 54 G n 1 55 G n 1 56 U n 1 57 G n 1 58 A n 1 59 A n 1 60 G n 1 61 A n 1 62 A n 1 63 U n 1 64 A n 1 65 C n 1 66 G n 1 67 A n 1 68 C n 1 69 C n 1 70 A n 1 71 C n 1 72 C n 1 73 U n 1 74 A n 1 75 G n 1 76 G n 1 77 C n 1 78 U n 1 79 C n 1 80 G n 1 81 A n 1 82 A n 1 83 A n 1 84 G n 1 85 A n 1 86 G n 1 87 C n 1 88 C n 1 89 U n 1 90 A n 1 91 A n 1 92 A n 1 93 A n 1 94 C n 1 95 A n 1 96 U n 1 97 A n 1 98 C n 1 99 C n 1 100 U n 1 101 U n 1 102 U n 1 103 C n 1 104 C n 1 105 U n 1 106 G n 1 107 G n 1 108 A n 1 109 U n 1 110 U n 1 111 C n 1 112 C n 1 113 A n 1 114 C n 1 115 U n 1 116 G n 1 117 C n 1 118 U n 1 119 A n 1 120 U n 1 121 C n 1 122 C n 1 123 A n 1 124 C n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 124 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 ? ? ? A . n A 1 2 U 2 2 ? ? ? A . n A 1 3 G 3 3 ? ? ? A . n A 1 4 A 4 4 ? ? ? A . n A 1 5 G 5 5 5 G G A . n A 1 6 G 6 6 6 G G A . n A 1 7 U 7 7 7 U U A . n A 1 8 G 8 8 8 G G A . n A 1 9 C 9 9 9 C C A . n A 1 10 A 10 10 10 A A A . n A 1 11 G 11 11 11 G G A . n A 1 12 G 12 12 12 G G A . n A 1 13 U 13 13 13 U U A . n A 1 14 A 14 14 14 A A A . n A 1 15 C 15 15 15 C C A . n A 1 16 A 16 16 16 A A A . n A 1 17 U 17 17 17 U U A . n A 1 18 C 18 18 18 C C A . n A 1 19 C 19 19 19 C C A . n A 1 20 A 20 20 20 A A A . n A 1 21 G 21 21 21 G G A . n A 1 22 C 22 22 22 C C A . n A 1 23 U 23 23 23 U U A . n A 1 24 G 24 24 24 G G A . n A 1 25 A 25 25 25 A A A . n A 1 26 U 26 26 26 U U A . n A 1 27 G 27 27 27 G G A . n A 1 28 A 28 28 28 A A A . n A 1 29 G 29 29 29 G G A . n A 1 30 U 30 30 30 U U A . n A 1 31 C 31 31 31 C C A . n A 1 32 C 32 32 32 C C A . n A 1 33 C 33 33 33 C C A . n A 1 34 A 34 34 34 A A A . n A 1 35 A 35 35 35 A A A . n A 1 36 A 36 36 36 A A A . n A 1 37 U 37 37 37 U U A . n A 1 38 A 38 38 38 A A A . n A 1 39 G 39 39 39 G G A . n A 1 40 G 40 40 40 G G A . n A 1 41 A 41 41 41 A A A . n A 1 42 C 42 42 42 C C A . n A 1 43 A 43 43 43 A A A . n A 1 44 A 44 44 44 A A A . n A 1 45 A 45 45 45 A A A . n A 1 46 A 46 46 46 A A A . n A 1 47 A 47 47 47 A A A . n A 1 48 G 48 48 48 G G A . n A 1 49 G 49 49 49 G G A . n A 1 50 G 50 50 50 G G A . n A 1 51 A 51 51 51 A A A . n A 1 52 G 52 52 52 G G A . n A 1 53 A 53 53 53 A A A . n A 1 54 G 54 54 54 G G A . n A 1 55 G 55 55 55 G G A . n A 1 56 U 56 56 56 U U A . n A 1 57 G 57 57 57 G G A . n A 1 58 A 58 58 58 A A A . n A 1 59 A 59 59 59 A A A . n A 1 60 G 60 60 60 G G A . n A 1 61 A 61 61 61 A A A . n A 1 62 A 62 62 62 A A A . n A 1 63 U 63 63 63 U U A . n A 1 64 A 64 64 64 A A A . n A 1 65 C 65 65 65 C C A . n A 1 66 G 66 66 66 G G A . n A 1 67 A 67 67 67 A A A . n A 1 68 C 68 68 68 C C A . n A 1 69 C 69 69 69 C C A . n A 1 70 A 70 70 70 A A A . n A 1 71 C 71 71 71 C C A . n A 1 72 C 72 72 72 C C A . n A 1 73 U 73 73 73 U U A . n A 1 74 A 74 74 74 A A A . n A 1 75 G 75 75 75 G G A . n A 1 76 G 76 76 76 G G A . n A 1 77 C 77 77 77 C C A . n A 1 78 U 78 78 78 U U A . n A 1 79 C 79 79 79 C C A . n A 1 80 G 80 80 80 G G A . n A 1 81 A 81 81 81 A A A . n A 1 82 A 82 82 82 A A A . n A 1 83 A 83 83 83 A A A . n A 1 84 G 84 84 84 G G A . n A 1 85 A 85 85 85 A A A . n A 1 86 G 86 86 86 G G A . n A 1 87 C 87 87 87 C C A . n A 1 88 C 88 88 88 C C A . n A 1 89 U 89 89 89 U U A . n A 1 90 A 90 90 90 A A A . n A 1 91 A 91 91 91 A A A . n A 1 92 A 92 92 92 A A A . n A 1 93 A 93 93 93 A A A . n A 1 94 C 94 94 94 C C A . n A 1 95 A 95 95 95 A A A . n A 1 96 U 96 96 96 U U A . n A 1 97 A 97 97 97 A A A . n A 1 98 C 98 98 98 C C A . n A 1 99 C 99 99 99 C C A . n A 1 100 U 100 100 100 U U A . n A 1 101 U 101 101 101 U U A . n A 1 102 U 102 102 102 U U A . n A 1 103 C 103 103 103 C C A . n A 1 104 C 104 104 104 C C A . n A 1 105 U 105 105 105 U U A . n A 1 106 G 106 106 106 G G A . n A 1 107 G 107 107 107 G G A . n A 1 108 A 108 108 108 A A A . n A 1 109 U 109 109 109 U U A . n A 1 110 U 110 110 110 U U A . n A 1 111 C 111 111 111 C C A . n A 1 112 C 112 112 112 C C A . n A 1 113 A 113 113 ? ? ? A . n A 1 114 C 114 114 ? ? ? A . n A 1 115 U 115 115 115 U U A . n A 1 116 G 116 116 116 G G A . n A 1 117 C 117 117 117 C C A . n A 1 118 U 118 118 ? ? ? A . n A 1 119 A 119 119 ? ? ? A . n A 1 120 U 120 120 ? ? ? A . n A 1 121 C 121 121 ? ? ? A . n A 1 122 C 122 122 ? ? ? A . n A 1 123 A 123 123 ? ? ? A . n A 1 124 C 124 124 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG 1 201 1 MG MG A . C 2 MG 1 202 3 MG MG A . D 2 MG 1 203 4 MG MG A . E 2 MG 1 204 5 MG MG A . F 2 MG 1 205 6 MG MG A . G 2 MG 1 206 7 MG MG A . H 2 MG 1 207 8 MG MG A . I 2 MG 1 208 9 MG MG A . # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 8TKJ _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8TKJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8TKJ _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 169.75 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 8TKJ _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high . _refine.ls_d_res_low ? _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_R_free ? _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs ? _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work ? _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method NONE _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'GeoStd + Monomer Library + CDL v1.2' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id ? _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.0018 ? 2663 ? f_bond_d ? ? 'ELECTRON MICROSCOPY' ? 0.3119 ? 4147 ? f_angle_d ? ? 'ELECTRON MICROSCOPY' ? 0.0211 ? 555 ? f_chiral_restr ? ? 'ELECTRON MICROSCOPY' ? 0.0011 ? 111 ? f_plane_restr ? ? 'ELECTRON MICROSCOPY' ? 20.2818 ? 1326 ? f_dihedral_angle_d ? ? # _struct.entry_id 8TKJ _struct.title 'Cryo-EM structure of RNA device 43, apo state' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8TKJ _struct_keywords.text 'RNA device, RNA' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? I N N 2 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 8TKJ _struct_ref.pdbx_db_accession 8TKJ _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 8TKJ _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 124 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 8TKJ _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 124 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 124 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details 'not applicable' # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A A 53 OP1 ? ? ? 1_555 B MG . MG ? ? A A 53 A MG 201 1_555 ? ? ? ? ? ? ? 2.204 ? ? metalc2 metalc ? ? A A 53 OP2 ? ? ? 1_555 B MG . MG ? ? A A 53 A MG 201 1_555 ? ? ? ? ? ? ? 1.969 ? ? metalc3 metalc ? ? A A 53 "O5'" ? ? ? 1_555 B MG . MG ? ? A A 53 A MG 201 1_555 ? ? ? ? ? ? ? 2.805 ? ? hydrog1 hydrog ? ? A G 8 N1 ? ? ? 1_555 A C 117 O2 ? ? A G 8 A C 117 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog2 hydrog ? ? A C 9 N3 ? ? ? 1_555 A G 116 N1 ? ? A C 9 A G 116 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog3 hydrog ? ? A C 9 N4 ? ? ? 1_555 A C 117 N3 ? ? A C 9 A C 117 1_555 ? ? ? ? ? ? 'C-C MISPAIR' ? ? ? hydrog4 hydrog ? ? A G 11 O6 ? ? ? 1_555 A C 112 N4 ? ? A G 11 A C 112 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog5 hydrog ? ? A G 11 N1 ? ? ? 1_555 A U 115 O2 ? ? A G 11 A U 115 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog6 hydrog ? ? A G 12 N1 ? ? ? 1_555 A C 111 N3 ? ? A G 12 A C 111 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 12 N2 ? ? ? 1_555 A C 111 O2 ? ? A G 12 A C 111 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 12 O6 ? ? ? 1_555 A C 111 N4 ? ? A G 12 A C 111 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A U 13 N3 ? ? ? 1_555 A A 35 N7 ? ? A U 13 A A 35 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog10 hydrog ? ? A U 13 O2 ? ? ? 1_555 A A 35 N6 ? ? A U 13 A A 35 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog11 hydrog ? ? A C 15 N4 ? ? ? 1_555 A C 33 O2 ? ? A C 15 A C 33 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog12 hydrog ? ? A C 15 O2 ? ? ? 1_555 A C 33 N4 ? ? A C 15 A C 33 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog13 hydrog ? ? A A 16 N1 ? ? ? 1_555 A U 109 N3 ? ? A A 16 A U 109 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A A 16 N6 ? ? ? 1_555 A U 109 O4 ? ? A A 16 A U 109 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A U 17 N3 ? ? ? 1_555 A A 108 N1 ? ? A U 17 A A 108 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A U 17 O4 ? ? ? 1_555 A A 108 N6 ? ? A U 17 A A 108 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A C 18 N4 ? ? ? 1_555 A G 107 O6 ? ? A C 18 A G 107 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog18 hydrog ? ? A C 18 N4 ? ? ? 1_555 A A 108 N1 ? ? A C 18 A A 108 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog19 hydrog ? ? A A 20 N1 ? ? ? 1_555 A U 105 N3 ? ? A A 20 A U 105 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A A 20 N6 ? ? ? 1_555 A U 105 O4 ? ? A A 20 A U 105 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A G 21 N1 ? ? ? 1_555 A C 104 N3 ? ? A G 21 A C 104 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A G 21 N2 ? ? ? 1_555 A C 104 O2 ? ? A G 21 A C 104 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A G 21 O6 ? ? ? 1_555 A C 104 N4 ? ? A G 21 A C 104 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A C 22 N3 ? ? ? 1_555 A G 27 N1 ? ? A C 22 A G 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A C 22 N4 ? ? ? 1_555 A G 27 O6 ? ? A C 22 A G 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A C 22 O2 ? ? ? 1_555 A G 27 N2 ? ? A C 22 A G 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A G 24 N2 ? ? ? 1_555 A A 45 N1 ? ? A G 24 A A 45 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog28 hydrog ? ? A A 28 N6 ? ? ? 1_555 A A 43 N3 ? ? A A 28 A A 43 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? ? hydrog29 hydrog ? ? A G 29 N1 ? ? ? 1_555 A C 42 N3 ? ? A G 29 A C 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A G 29 N2 ? ? ? 1_555 A C 42 O2 ? ? A G 29 A C 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A G 29 O6 ? ? ? 1_555 A C 42 N4 ? ? A G 29 A C 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A U 30 N3 ? ? ? 1_555 A A 41 N1 ? ? A U 30 A A 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A U 30 O4 ? ? ? 1_555 A A 41 N6 ? ? A U 30 A A 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A C 31 N3 ? ? ? 1_555 A G 40 N1 ? ? A C 31 A G 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A C 31 N4 ? ? ? 1_555 A G 40 O6 ? ? A C 31 A G 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A C 31 O2 ? ? ? 1_555 A G 40 N2 ? ? A C 31 A G 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A C 32 N3 ? ? ? 1_555 A G 39 N1 ? ? A C 32 A G 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A C 32 N4 ? ? ? 1_555 A G 39 O6 ? ? A C 32 A G 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A C 32 O2 ? ? ? 1_555 A G 39 N2 ? ? A C 32 A G 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A C 32 N3 ? ? ? 1_555 A G 40 N1 ? ? A C 32 A G 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A C 32 N4 ? ? ? 1_555 A G 40 O6 ? ? A C 32 A G 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A C 32 O2 ? ? ? 1_555 A G 40 N2 ? ? A C 32 A G 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A A 35 N3 ? ? ? 1_555 A U 37 N3 ? ? A A 35 A U 37 1_555 ? ? ? ? ? ? 'A-U PAIR' ? ? ? hydrog44 hydrog ? ? A A 38 N6 ? ? ? 1_555 A U 110 O2 ? ? A A 38 A U 110 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog45 hydrog ? ? A A 38 N7 ? ? ? 1_555 A U 110 N3 ? ? A A 38 A U 110 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog46 hydrog ? ? A A 44 N6 ? ? ? 1_555 A C 103 O2 ? ? A A 44 A C 103 1_555 ? ? ? ? ? ? 'A-C MISPAIR' ? ? ? hydrog47 hydrog ? ? A A 45 N6 ? ? ? 1_555 A C 103 O2 ? ? A A 45 A C 103 1_555 ? ? ? ? ? ? 'A-C MISPAIR' ? ? ? hydrog48 hydrog ? ? A A 46 N1 ? ? ? 1_555 A U 102 N3 ? ? A A 46 A U 102 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A A 46 N6 ? ? ? 1_555 A U 102 O4 ? ? A A 46 A U 102 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A A 47 N1 ? ? ? 1_555 A U 101 N3 ? ? A A 47 A U 101 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A A 47 N6 ? ? ? 1_555 A U 101 O4 ? ? A A 47 A U 101 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A G 48 N1 ? ? ? 1_555 A U 100 O2 ? ? A G 48 A U 100 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog53 hydrog ? ? A G 49 N1 ? ? ? 1_555 A C 99 N3 ? ? A G 49 A C 99 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A G 49 N2 ? ? ? 1_555 A C 99 O2 ? ? A G 49 A C 99 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A G 49 O6 ? ? ? 1_555 A C 99 N4 ? ? A G 49 A C 99 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? A G 50 N1 ? ? ? 1_555 A C 98 N3 ? ? A G 50 A C 98 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? A G 50 N2 ? ? ? 1_555 A C 98 O2 ? ? A G 50 A C 98 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? A G 50 O6 ? ? ? 1_555 A C 98 N4 ? ? A G 50 A C 98 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? A A 51 N1 ? ? ? 1_555 A A 97 N6 ? ? A A 51 A A 97 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? ? hydrog60 hydrog ? ? A G 52 N2 ? ? ? 1_555 A U 96 O4 ? ? A G 52 A U 96 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog61 hydrog ? ? A A 53 N1 ? ? ? 1_555 A A 93 N6 ? ? A A 53 A A 93 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog62 hydrog ? ? A A 53 N6 ? ? ? 1_555 A A 93 N7 ? ? A A 53 A A 93 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog63 hydrog ? ? A G 54 N1 ? ? ? 1_555 A C 72 N3 ? ? A G 54 A C 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? A G 54 N2 ? ? ? 1_555 A C 72 O2 ? ? A G 54 A C 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? A G 54 O6 ? ? ? 1_555 A C 72 N4 ? ? A G 54 A C 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? A G 55 N1 ? ? ? 1_555 A C 71 N3 ? ? A G 55 A C 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? A G 55 N2 ? ? ? 1_555 A C 71 O2 ? ? A G 55 A C 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? A G 55 O6 ? ? ? 1_555 A C 71 N4 ? ? A G 55 A C 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? A U 56 N3 ? ? ? 1_555 A A 70 N1 ? ? A U 56 A A 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? A U 56 O4 ? ? ? 1_555 A A 70 N6 ? ? A U 56 A A 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? A G 57 N1 ? ? ? 1_555 A C 69 N3 ? ? A G 57 A C 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? A G 57 N2 ? ? ? 1_555 A C 69 O2 ? ? A G 57 A C 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? A G 57 O6 ? ? ? 1_555 A C 69 N4 ? ? A G 57 A C 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? A A 58 N1 ? ? ? 1_555 A C 68 N4 ? ? A A 58 A C 68 1_555 ? ? ? ? ? ? 'A-C MISPAIR' ? ? ? hydrog75 hydrog ? ? A A 59 N3 ? ? ? 1_555 A A 67 N6 ? ? A A 59 A A 67 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? ? hydrog76 hydrog ? ? A G 60 N2 ? ? ? 1_555 A U 63 O4 ? ? A G 60 A U 63 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog77 hydrog ? ? A A 64 N1 ? ? ? 1_555 A A 93 N6 ? ? A A 64 A A 93 1_555 ? ? ? ? ? ? TYPE_1_PAIR ? ? ? hydrog78 hydrog ? ? A A 64 N6 ? ? ? 1_555 A A 93 N1 ? ? A A 64 A A 93 1_555 ? ? ? ? ? ? TYPE_1_PAIR ? ? ? hydrog79 hydrog ? ? A C 65 N4 ? ? ? 1_555 A C 94 O2 ? ? A C 65 A C 94 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog80 hydrog ? ? A C 65 O2 ? ? ? 1_555 A C 94 N4 ? ? A C 65 A C 94 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog81 hydrog ? ? A G 66 O6 ? ? ? 1_555 A C 94 N4 ? ? A G 66 A C 94 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog82 hydrog ? ? A G 66 O6 ? ? ? 1_555 A A 95 N6 ? ? A G 66 A A 95 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog83 hydrog ? ? A U 73 N3 ? ? ? 1_555 A A 90 N1 ? ? A U 73 A A 90 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog84 hydrog ? ? A A 74 N1 ? ? ? 1_555 A U 89 N3 ? ? A A 74 A U 89 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog85 hydrog ? ? A A 74 N6 ? ? ? 1_555 A U 89 O4 ? ? A A 74 A U 89 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog86 hydrog ? ? A G 75 N1 ? ? ? 1_555 A C 88 N3 ? ? A G 75 A C 88 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog87 hydrog ? ? A G 75 N2 ? ? ? 1_555 A C 88 O2 ? ? A G 75 A C 88 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog88 hydrog ? ? A G 75 O6 ? ? ? 1_555 A C 88 N4 ? ? A G 75 A C 88 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog89 hydrog ? ? A G 76 N1 ? ? ? 1_555 A C 87 N3 ? ? A G 76 A C 87 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog90 hydrog ? ? A G 76 N2 ? ? ? 1_555 A C 87 O2 ? ? A G 76 A C 87 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog91 hydrog ? ? A G 76 O6 ? ? ? 1_555 A C 87 N4 ? ? A G 76 A C 87 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog92 hydrog ? ? A C 77 N3 ? ? ? 1_555 A G 86 N1 ? ? A C 77 A G 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog93 hydrog ? ? A C 77 N4 ? ? ? 1_555 A G 86 O6 ? ? A C 77 A G 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog94 hydrog ? ? A C 77 O2 ? ? ? 1_555 A G 86 N2 ? ? A C 77 A G 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog95 hydrog ? ? A U 78 N3 ? ? ? 1_555 A A 85 N1 ? ? A U 78 A A 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog96 hydrog ? ? A U 78 O4 ? ? ? 1_555 A A 85 N6 ? ? A U 78 A A 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog97 hydrog ? ? A C 79 N3 ? ? ? 1_555 A G 84 N1 ? ? A C 79 A G 84 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog98 hydrog ? ? A C 79 N4 ? ? ? 1_555 A G 84 O6 ? ? A C 79 A G 84 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog99 hydrog ? ? A C 79 O2 ? ? ? 1_555 A G 84 N2 ? ? A C 79 A G 84 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog100 hydrog ? ? A G 80 N2 ? ? ? 1_555 A A 83 N7 ? ? A G 80 A A 83 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog101 hydrog ? ? A G 80 N3 ? ? ? 1_555 A A 83 N6 ? ? A G 80 A A 83 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP1 ? A A 53 ? A A 53 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 OP2 ? A A 53 ? A A 53 ? 1_555 75.5 ? 2 OP1 ? A A 53 ? A A 53 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 "O5'" ? A A 53 ? A A 53 ? 1_555 58.1 ? 3 OP2 ? A A 53 ? A A 53 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 "O5'" ? A A 53 ? A A 53 ? 1_555 59.6 ? # _pdbx_entry_details.entry_id 8TKJ _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification N # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 N6 A A 28 ? ? "O2'" A A 43 ? ? 2.17 2 1 N4 A C 9 ? ? O6 A G 116 ? ? 2.19 # _space_group_symop.id 1 _space_group_symop.operation_xyz x,y,z # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 8TKJ _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space ? _em_3d_fitting.ref_protocol ? # _em_3d_reconstruction.entry_id 8TKJ _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 3.2 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 731795 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type POINT # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details ? _em_buffer.pH 6.8 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source RECOMBINANT _em_entity_assembly.type COMPLEX _em_entity_assembly.name 'Synthetic RNA device containing hammerhead ribozyme and tetracycline-binding aptamer' _em_entity_assembly.details ? _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list 1 # _em_imaging.entry_id 8TKJ _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'TFS KRIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model ? _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_min 500 _em_imaging.nominal_defocus_max 2000 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification ? _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.specimen_id 1 _em_imaging.cryogen ? # _em_vitrification.entry_id 8TKJ _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity 100 _em_vitrification.temp ? _em_vitrification.chamber_temperature 284 _em_vitrification.instrument 'FEI VITROBOT MARK IV' _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 8TKJ _em_experiment.id 1 _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.aggregation_state PARTICLE _em_experiment.entity_assembly_id 1 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A G 1 ? A G 1 2 1 Y 1 A U 2 ? A U 2 3 1 Y 1 A G 3 ? A G 3 4 1 Y 1 A A 4 ? A A 4 5 1 Y 1 A A 113 ? A A 113 6 1 Y 1 A C 114 ? A C 114 7 1 Y 1 A U 118 ? A U 118 8 1 Y 1 A A 119 ? A A 119 9 1 Y 1 A U 120 ? A U 120 10 1 Y 1 A C 121 ? A C 121 11 1 Y 1 A C 122 ? A C 122 12 1 Y 1 A A 123 ? A A 123 13 1 Y 1 A C 124 ? A C 124 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 MG MG MG N N 111 U OP3 O N N 112 U P P N N 113 U OP1 O N N 114 U OP2 O N N 115 U "O5'" O N N 116 U "C5'" C N N 117 U "C4'" C N R 118 U "O4'" O N N 119 U "C3'" C N S 120 U "O3'" O N N 121 U "C2'" C N R 122 U "O2'" O N N 123 U "C1'" C N R 124 U N1 N N N 125 U C2 C N N 126 U O2 O N N 127 U N3 N N N 128 U C4 C N N 129 U O4 O N N 130 U C5 C N N 131 U C6 C N N 132 U HOP3 H N N 133 U HOP2 H N N 134 U "H5'" H N N 135 U "H5''" H N N 136 U "H4'" H N N 137 U "H3'" H N N 138 U "HO3'" H N N 139 U "H2'" H N N 140 U "HO2'" H N N 141 U "H1'" H N N 142 U H3 H N N 143 U H5 H N N 144 U H6 H N N 145 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 U OP3 P sing N N 116 U OP3 HOP3 sing N N 117 U P OP1 doub N N 118 U P OP2 sing N N 119 U P "O5'" sing N N 120 U OP2 HOP2 sing N N 121 U "O5'" "C5'" sing N N 122 U "C5'" "C4'" sing N N 123 U "C5'" "H5'" sing N N 124 U "C5'" "H5''" sing N N 125 U "C4'" "O4'" sing N N 126 U "C4'" "C3'" sing N N 127 U "C4'" "H4'" sing N N 128 U "O4'" "C1'" sing N N 129 U "C3'" "O3'" sing N N 130 U "C3'" "C2'" sing N N 131 U "C3'" "H3'" sing N N 132 U "O3'" "HO3'" sing N N 133 U "C2'" "O2'" sing N N 134 U "C2'" "C1'" sing N N 135 U "C2'" "H2'" sing N N 136 U "O2'" "HO2'" sing N N 137 U "C1'" N1 sing N N 138 U "C1'" "H1'" sing N N 139 U N1 C2 sing N N 140 U N1 C6 sing N N 141 U C2 O2 doub N N 142 U C2 N3 sing N N 143 U N3 C4 sing N N 144 U N3 H3 sing N N 145 U C4 O4 doub N N 146 U C4 C5 sing N N 147 U C5 C6 doub N N 148 U C5 H5 sing N N 149 U C6 H6 sing N N 150 # _em_admin.current_status REL _em_admin.deposition_date 2023-07-25 _em_admin.deposition_site RCSB _em_admin.entry_id 8TKJ _em_admin.last_update 2025-02-19 _em_admin.map_release_date 2025-02-19 _em_admin.title 'Cryo-EM structure of RNA device 43, apo state' # loop_ _em_buffer_component.buffer_id _em_buffer_component.concentration _em_buffer_component.concentration_units _em_buffer_component.formula _em_buffer_component.id _em_buffer_component.name 1 10 mM ? 1 Bis-Tris 1 100 mM ? 2 'potassium chloride' 1 1 mM ? 3 'magnesium chloride' # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.experimental_flag NO _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.units MEGADALTONS _em_entity_assembly_molwt.value 0.040229 # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 32630 _em_entity_assembly_naturalsource.organism 'synthetic construct' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? _em_entity_assembly_naturalsource.details ? # _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.id 2 _em_entity_assembly_recombinant.ncbi_tax_id 32630 _em_entity_assembly_recombinant.organism 'synthetic construct' _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain ? # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time ? _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 52.2 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'FEI FALCON IV (4k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version 'PARTICLE SELECTION' ? 1 1 ? ? ? ? 'MODEL REFINEMENT' ? 2 ? ? ? PHENIX 1.21rc1_4924 'IMAGE ACQUISITION' ? 3 ? ? 1 ? ? MASKING ? 4 ? ? ? ? ? 'CTF CORRECTION' ? 5 1 ? ? ? ? 'LAYERLINE INDEXING' ? 6 ? ? ? ? ? 'DIFFRACTION INDEXING' ? 7 ? ? ? ? ? 'MODEL FITTING' ? 8 ? ? ? ? ? OTHER ? 9 ? ? ? ? ? 'INITIAL EULER ASSIGNMENT' ? 10 1 ? ? ? ? 'FINAL EULER ASSIGNMENT' ? 11 1 ? ? ? ? CLASSIFICATION ? 12 1 ? ? ? ? RECONSTRUCTION ? 13 1 ? ? ? ? 'VOLUME SELECTION' ? 14 1 1 1 ? ? 'SERIES ALIGNMENT' ? 15 1 1 1 ? ? 'MOLECULAR REPLACEMENT' ? 16 1 1 1 ? ? 'LATTICE DISTORTION CORRECTION' ? 17 1 1 1 ? ? 'SYMMETRY DETERMINATION' ? 18 1 1 1 ? ? 'CRYSTALLOGRAPHY MERGING' ? 19 1 1 1 ? ? # _em_specimen.concentration 2.5 _em_specimen.details 'in vitro transcribed RNA' _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 8TKJ 'double helix' 8TKJ 'a-form double helix' 8TKJ 'parallel strands' 8TKJ 'hairpin loop' 8TKJ tetraloop 8TKJ 'mismatched base pair' 8TKJ 'internal loop' 8TKJ 'three-way junction' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 8 1_555 A C 117 1_555 -3.361 -1.219 -1.153 -2.203 -2.905 -2.470 1 A_G8:C117_A A 8 ? A 117 ? ? ? 1 A C 9 1_555 A G 116 1_555 -0.619 -0.179 -1.627 19.062 1.648 -36.843 2 A_C9:G116_A A 9 ? A 116 ? ? ? 1 A G 11 1_555 A C 112 1_555 -0.520 0.220 0.240 1.522 6.572 -13.675 3 A_G11:C112_A A 11 ? A 112 ? ? 1 1 A G 12 1_555 A C 111 1_555 0.449 0.004 0.056 0.505 -15.587 -10.557 4 A_G12:C111_A A 12 ? A 111 ? 19 1 1 A A 64 1_555 A A 93 1_555 -1.599 -1.592 0.606 31.680 13.280 172.262 5 A_A64:A93_A A 64 ? A 93 ? 1 2 1 A C 65 1_555 A C 94 1_555 1.795 1.847 0.454 12.680 9.072 173.876 6 A_C65:C94_A A 65 ? A 94 ? 15 2 1 A G 66 1_555 A A 95 1_555 2.850 -5.638 -0.372 11.393 1.102 136.230 7 A_G66:A95_A A 66 ? A 95 ? ? 3 1 A G 52 1_555 A U 96 1_555 5.071 0.325 -0.164 -8.802 -8.328 -42.642 8 A_G52:U96_A A 52 ? A 96 ? ? 1 1 A A 51 1_555 A A 97 1_555 1.992 1.719 0.302 -7.848 -7.978 -7.162 9 A_A51:A97_A A 51 ? A 97 ? ? 1 1 A G 50 1_555 A C 98 1_555 -0.266 -0.221 0.362 -9.617 -23.498 0.483 10 A_G50:C98_A A 50 ? A 98 ? 19 1 1 A G 49 1_555 A C 99 1_555 -0.785 -0.552 0.010 -0.198 -23.534 -10.390 11 A_G49:C99_A A 49 ? A 99 ? 19 1 1 A G 48 1_555 A U 100 1_555 -2.088 0.403 -0.169 5.286 -8.595 5.177 12 A_G48:U100_A A 48 ? A 100 ? ? ? 1 A A 47 1_555 A U 101 1_555 0.535 -0.068 -0.385 2.441 -25.776 -2.515 13 A_A47:U101_A A 47 ? A 101 ? 20 1 1 A A 46 1_555 A U 102 1_555 0.485 0.392 0.441 -4.917 0.870 -10.096 14 A_A46:U102_A A 46 ? A 102 ? 20 1 1 A A 45 1_555 A G 24 1_555 -4.363 3.121 -0.128 43.858 -34.890 77.509 15 A_A45:G24_A A 45 ? A 24 ? ? ? 1 A A 44 1_555 A C 103 1_555 -6.326 -3.237 -0.808 -20.481 -13.127 -58.609 16 A_A44:C103_A A 44 ? A 103 ? ? ? 1 A A 43 1_555 A A 28 1_555 7.273 -4.863 0.314 -0.590 -6.520 4.808 17 A_A43:A28_A A 43 ? A 28 ? ? 6 1 A C 42 1_555 A G 29 1_555 0.271 -0.292 -0.166 14.872 -8.766 1.855 18 A_C42:G29_A A 42 ? A 29 ? 19 1 1 A A 41 1_555 A U 30 1_555 0.000 -0.249 -0.011 -3.150 -12.973 -9.806 19 A_A41:U30_A A 41 ? A 30 ? 20 1 1 A G 40 1_555 A C 31 1_555 -0.356 -0.282 -0.194 -9.378 -10.626 -9.112 20 A_G40:C31_A A 40 ? A 31 ? 19 1 1 A G 39 1_555 A C 32 1_555 0.370 -0.333 -1.169 -26.358 -5.306 -2.650 21 A_G39:C32_A A 39 ? A 32 ? 19 1 1 A C 15 1_555 A C 33 1_555 1.969 1.999 1.168 4.568 14.784 168.850 22 A_C15:C33_A A 15 ? A 33 ? 15 2 1 A U 37 1_555 A A 35 1_555 -1.411 4.201 1.104 -38.760 42.451 156.196 23 A_U37:A35_A A 37 ? A 35 ? ? ? 1 A A 38 1_555 A U 110 1_555 -4.180 -2.770 0.476 -11.882 8.857 -86.794 24 A_A38:U110_A A 38 ? A 110 ? 24 4 1 A A 16 1_555 A U 109 1_555 1.398 -0.021 -0.876 -0.969 -11.969 -22.068 25 A_A16:U109_A A 16 ? A 109 ? 20 1 1 A U 17 1_555 A A 108 1_555 -0.510 -0.166 -0.350 6.100 4.418 -12.657 26 A_U17:A108_A A 17 ? A 108 ? 20 1 1 A C 18 1_555 A G 107 1_555 1.352 -0.448 -1.514 12.213 -42.291 -26.122 27 A_C18:G107_A A 18 ? A 107 ? ? 1 1 A A 20 1_555 A U 105 1_555 0.472 -0.116 0.603 3.416 10.187 -5.272 28 A_A20:U105_A A 20 ? A 105 ? 20 1 1 A G 21 1_555 A C 104 1_555 0.206 -0.119 -0.194 -9.566 -1.860 -5.244 29 A_G21:C104_A A 21 ? A 104 ? 19 1 1 A C 22 1_555 A G 27 1_555 -1.112 0.208 0.565 14.121 -27.680 -4.518 30 A_C22:G27_A A 22 ? A 27 ? 19 1 1 A U 63 1_555 A G 60 1_555 -5.611 -4.330 -2.359 -52.042 19.296 -32.379 31 A_U63:G60_A A 63 ? A 60 ? ? 6 1 A A 67 1_555 A A 59 1_555 -5.528 -0.782 2.046 22.420 19.683 -23.715 32 A_A67:A59_A A 67 ? A 59 ? ? ? 1 A C 68 1_555 A A 58 1_555 -3.261 0.706 -1.250 28.173 -25.361 -40.103 33 A_C68:A58_A A 68 ? A 58 ? ? ? 1 A C 69 1_555 A G 57 1_555 1.039 -0.068 0.295 2.011 -24.467 -2.327 34 A_C69:G57_A A 69 ? A 57 ? 19 1 1 A A 70 1_555 A U 56 1_555 1.366 0.022 0.890 5.306 -2.881 -9.315 35 A_A70:U56_A A 70 ? A 56 ? 20 1 1 A C 71 1_555 A G 55 1_555 1.295 -0.745 0.935 5.927 -3.304 -6.596 36 A_C71:G55_A A 71 ? A 55 ? 19 1 1 A C 72 1_555 A G 54 1_555 0.917 -0.434 -0.795 12.765 -16.837 -12.205 37 A_C72:G54_A A 72 ? A 54 ? 19 1 1 A U 73 1_555 A A 90 1_555 -0.087 0.674 -0.621 1.620 6.653 14.425 38 A_U73:A90_A A 73 ? A 90 ? ? ? 1 A A 74 1_555 A U 89 1_555 0.511 -0.376 -0.568 -14.032 -21.275 -6.190 39 A_A74:U89_A A 74 ? A 89 ? 20 1 1 A G 75 1_555 A C 88 1_555 0.244 -0.192 0.701 4.355 1.197 -6.289 40 A_G75:C88_A A 75 ? A 88 ? 19 1 1 A G 76 1_555 A C 87 1_555 -0.430 0.201 0.249 1.261 -4.935 2.030 41 A_G76:C87_A A 76 ? A 87 ? 19 1 1 A C 77 1_555 A G 86 1_555 0.908 -0.276 0.051 2.875 -6.311 -3.359 42 A_C77:G86_A A 77 ? A 86 ? 19 1 1 A U 78 1_555 A A 85 1_555 1.018 -0.176 -0.553 14.810 -16.664 -0.553 43 A_U78:A85_A A 78 ? A 85 ? 20 1 1 A C 79 1_555 A G 84 1_555 0.131 -0.510 1.100 -7.286 18.582 -1.923 44 A_C79:G84_A A 79 ? A 84 ? 19 1 1 A G 80 1_555 A A 83 1_555 6.714 -4.508 -0.137 36.548 3.797 -29.806 45 A_G80:A83_A A 80 ? A 83 ? 11 10 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 8 1_555 A C 117 1_555 A C 9 1_555 A G 116 1_555 -1.498 -1.470 2.814 4.741 6.261 46.615 -2.248 2.183 2.453 7.846 -5.942 47.236 1 AA_G8C9:G116C117_AA A 8 ? A 117 ? A 9 ? A 116 ? 1 A G 11 1_555 A C 112 1_555 A G 12 1_555 A C 111 1_555 0.436 -1.960 3.223 0.978 5.238 39.484 -3.452 -0.532 2.959 7.710 -1.440 39.828 2 AA_G11G12:C111C112_AA A 11 ? A 112 ? A 12 ? A 111 ? 1 A A 64 1_555 A A 93 1_555 A C 65 1_555 A C 94 1_555 0.212 -0.253 3.188 -8.226 2.866 50.080 -0.490 -0.807 3.101 3.357 9.633 50.784 3 AA_A64C65:C94A93_AA A 64 ? A 93 ? A 65 ? A 94 ? 1 A C 65 1_555 A C 94 1_555 A G 66 1_555 A A 95 1_555 -0.835 -3.594 2.567 18.368 5.293 13.628 -9.757 5.216 0.040 15.181 -52.685 23.439 4 AA_C65G66:A95C94_AA A 65 ? A 94 ? A 66 ? A 95 ? 1 A G 66 1_555 A A 95 1_555 A G 52 1_555 A U 96 1_555 -1.090 -2.739 -2.160 -169.399 42.668 -169.057 1.395 -0.444 -2.187 -21.337 -84.711 -179.494 5 AA_G66G52:U96A95_AA A 66 ? A 95 ? A 52 ? A 96 ? 1 A G 52 1_555 A U 96 1_555 A A 51 1_555 A A 97 1_555 1.502 1.534 -3.361 -11.414 -12.253 -41.512 -3.044 2.932 -2.368 16.503 -15.372 -44.624 6 AA_G52A51:A97U96_AA A 52 ? A 96 ? A 51 ? A 97 ? 1 A A 51 1_555 A A 97 1_555 A G 50 1_555 A C 98 1_555 0.057 1.181 -3.148 -5.214 -3.045 -38.274 -2.134 0.691 -3.015 4.608 -7.892 -38.730 7 AA_A51G50:C98A97_AA A 51 ? A 97 ? A 50 ? A 98 ? 1 A G 50 1_555 A C 98 1_555 A G 49 1_555 A C 99 1_555 -0.518 1.678 -3.319 -0.796 -10.188 -41.805 -3.258 -0.631 -2.862 14.027 -1.096 -42.981 8 AA_G50G49:C99C98_AA A 50 ? A 98 ? A 49 ? A 99 ? 1 A G 49 1_555 A C 99 1_555 A G 48 1_555 A U 100 1_555 0.385 1.884 -3.492 3.635 -2.001 -31.587 -3.819 0.001 -3.391 3.657 6.642 -31.852 9 AA_G49G48:U100C99_AA A 49 ? A 99 ? A 48 ? A 100 ? 1 A G 48 1_555 A U 100 1_555 A A 47 1_555 A U 101 1_555 -0.863 1.472 -3.056 5.104 -10.935 -20.515 -6.445 -3.436 -1.789 27.811 12.981 -23.768 10 AA_G48A47:U101U100_AA A 48 ? A 100 ? A 47 ? A 101 ? 1 A A 47 1_555 A U 101 1_555 A A 46 1_555 A U 102 1_555 0.387 0.754 -3.500 -4.777 0.042 -33.083 -1.304 1.513 -3.413 -0.073 -8.335 -33.417 11 AA_A47A46:U102U101_AA A 47 ? A 101 ? A 46 ? A 102 ? 1 A A 46 1_555 A U 102 1_555 A A 45 1_555 A G 24 1_555 -0.480 -1.646 -3.751 5.991 8.530 -88.241 1.378 -0.484 -3.583 -6.108 4.290 -88.729 12 AA_A46A45:G24U102_AA A 46 ? A 102 ? A 45 ? A 24 ? 1 A A 45 1_555 A G 24 1_555 A A 44 1_555 A C 103 1_555 -1.445 4.514 -2.100 35.837 -32.488 9.690 1.122 -3.001 -4.442 -53.294 -58.789 49.275 13 AA_A45A44:C103G24_AA A 45 ? A 24 ? A 44 ? A 103 ? 1 A A 44 1_555 A C 103 1_555 A A 43 1_555 A A 28 1_555 0.279 0.964 -4.099 -17.733 1.163 -5.872 -2.212 12.348 -1.087 -4.702 -71.707 -18.708 14 AA_A44A43:A28C103_AA A 44 ? A 103 ? A 43 ? A 28 ? 1 A A 43 1_555 A A 28 1_555 A C 42 1_555 A G 29 1_555 -0.705 0.649 -3.796 -2.833 -7.124 -67.684 -0.891 -0.506 -3.743 6.375 -2.535 -68.066 15 AA_A43C42:G29A28_AA A 43 ? A 28 ? A 42 ? A 29 ? 1 A C 42 1_555 A G 29 1_555 A A 41 1_555 A U 30 1_555 -1.125 1.411 -2.797 -3.055 -4.289 -30.866 -3.299 -1.598 -2.678 7.985 -5.689 -31.301 16 AA_C42A41:U30G29_AA A 42 ? A 29 ? A 41 ? A 30 ? 1 A A 41 1_555 A U 30 1_555 A G 40 1_555 A C 31 1_555 0.271 1.471 -2.985 1.316 -4.801 -34.373 -3.115 0.276 -2.768 8.071 2.212 -34.720 17 AA_A41G40:C31U30_AA A 41 ? A 30 ? A 40 ? A 31 ? 1 A G 40 1_555 A C 31 1_555 A G 39 1_555 A C 32 1_555 0.264 1.191 -2.907 6.676 -0.083 -24.494 -2.734 -1.133 -2.873 0.191 15.373 -25.374 18 AA_G40G39:C32C31_AA A 40 ? A 31 ? A 39 ? A 32 ? 1 A G 39 1_555 A C 32 1_555 A C 15 1_555 A C 33 1_555 2.936 2.429 -0.163 -73.405 142.164 -58.387 -0.980 1.614 -0.786 -75.600 -39.036 -162.559 19 AA_G39C15:C33C32_AA A 39 ? A 32 ? A 15 ? A 33 ? 1 A U 37 1_555 A A 35 1_555 A A 38 1_555 A U 110 1_555 -1.602 2.603 3.291 42.718 49.901 80.371 0.743 1.862 3.275 34.194 -29.272 100.141 20 AA_U37A38:U110A35_AA A 37 ? A 35 ? A 38 ? A 110 ? 1 A A 38 1_555 A U 110 1_555 A A 16 1_555 A U 109 1_555 0.885 -2.079 3.441 -1.222 14.000 87.532 -1.790 -0.661 3.141 10.065 0.879 88.427 21 AA_A38A16:U109U110_AA A 38 ? A 110 ? A 16 ? A 109 ? 1 A A 16 1_555 A U 109 1_555 A U 17 1_555 A A 108 1_555 0.300 -1.861 3.010 -2.902 8.254 27.852 -5.200 -1.124 2.332 16.636 5.848 29.168 22 AA_A16U17:A108U109_AA A 16 ? A 109 ? A 17 ? A 108 ? 1 A U 17 1_555 A A 108 1_555 A C 18 1_555 A G 107 1_555 -1.064 -1.609 3.134 3.876 17.662 41.434 -3.457 1.687 2.204 23.655 -5.191 45.048 23 AA_U17C18:G107A108_AA A 17 ? A 108 ? A 18 ? A 107 ? 1 A A 20 1_555 A U 105 1_555 A G 21 1_555 A C 104 1_555 0.367 -1.995 3.480 6.415 21.105 36.243 -4.774 0.100 2.095 30.687 -9.327 42.234 24 AA_A20G21:C104U105_AA A 20 ? A 105 ? A 21 ? A 104 ? 1 A G 21 1_555 A C 104 1_555 A C 22 1_555 A G 27 1_555 0.962 0.134 3.239 7.284 -7.174 23.304 2.432 -0.028 3.208 -16.763 -17.022 25.419 25 AA_G21C22:G27C104_AA A 21 ? A 104 ? A 22 ? A 27 ? 1 A U 63 1_555 A G 60 1_555 A A 67 1_555 A A 59 1_555 -0.657 -2.649 5.355 22.529 18.752 53.037 -4.041 2.333 3.781 19.422 -23.334 60.080 26 AA_U63A67:A59G60_AA A 63 ? A 60 ? A 67 ? A 59 ? 1 A A 67 1_555 A A 59 1_555 A C 68 1_555 A A 58 1_555 0.090 -1.590 3.081 9.427 15.892 40.077 -3.420 0.649 2.287 21.841 -12.956 43.972 27 AA_A67C68:A58A59_AA A 67 ? A 59 ? A 68 ? A 58 ? 1 A C 68 1_555 A A 58 1_555 A C 69 1_555 A G 57 1_555 2.097 -1.826 3.859 -3.990 12.554 56.690 -2.617 -2.394 3.280 13.027 4.140 58.076 28 AA_C68C69:G57A58_AA A 68 ? A 58 ? A 69 ? A 57 ? 1 A C 69 1_555 A G 57 1_555 A A 70 1_555 A U 56 1_555 -0.750 -1.823 2.728 -4.542 9.450 29.591 -4.740 0.732 2.147 17.812 8.561 31.354 29 AA_C69A70:U56G57_AA A 69 ? A 57 ? A 70 ? A 56 ? 1 A A 70 1_555 A U 56 1_555 A C 71 1_555 A G 55 1_555 0.188 -2.019 3.129 -1.160 5.870 40.167 -3.507 -0.390 2.813 8.489 1.678 40.592 30 AA_A70C71:G55U56_AA A 70 ? A 56 ? A 71 ? A 55 ? 1 A C 71 1_555 A G 55 1_555 A C 72 1_555 A G 54 1_555 -0.307 -1.888 2.875 12.325 -3.945 29.864 -2.754 2.491 2.759 -7.241 -22.625 32.488 31 AA_C71C72:G54G55_AA A 71 ? A 55 ? A 72 ? A 54 ? 1 A C 72 1_555 A G 54 1_555 A U 73 1_555 A A 90 1_555 -1.081 -2.747 3.782 -5.261 9.461 7.082 -21.183 -0.198 0.506 49.729 27.654 12.931 32 AA_C72U73:A90G54_AA A 72 ? A 54 ? A 73 ? A 90 ? 1 A U 73 1_555 A A 90 1_555 A A 74 1_555 A U 89 1_555 -1.206 -1.617 3.631 -0.289 18.982 36.333 -4.410 1.696 2.527 28.201 0.430 40.845 33 AA_U73A74:U89A90_AA A 73 ? A 90 ? A 74 ? A 89 ? 1 A A 74 1_555 A U 89 1_555 A G 75 1_555 A C 88 1_555 -0.183 -1.548 2.475 -9.314 -0.256 28.096 -2.991 -1.159 2.424 -0.509 18.551 29.571 34 AA_A74G75:C88U89_AA A 74 ? A 89 ? A 75 ? A 88 ? 1 A G 75 1_555 A C 88 1_555 A G 76 1_555 A C 87 1_555 0.426 -1.953 3.082 2.494 10.400 31.932 -4.832 -0.387 2.373 18.275 -4.382 33.631 35 AA_G75G76:C87C88_AA A 75 ? A 88 ? A 76 ? A 87 ? 1 A G 76 1_555 A C 87 1_555 A C 77 1_555 A G 86 1_555 -0.440 -1.806 3.106 -0.006 -2.736 36.483 -2.513 0.701 3.229 -4.363 0.009 36.582 36 AA_G76C77:G86C87_AA A 76 ? A 87 ? A 77 ? A 86 ? 1 A C 77 1_555 A G 86 1_555 A U 78 1_555 A A 85 1_555 0.217 -1.131 2.709 7.485 6.660 29.703 -3.103 0.731 2.389 12.550 -14.105 31.311 37 AA_C77U78:A85G86_AA A 77 ? A 86 ? A 78 ? A 85 ? 1 A U 78 1_555 A A 85 1_555 A C 79 1_555 A G 84 1_555 -0.590 -1.733 3.696 -10.605 23.554 36.954 -4.459 -0.212 2.328 32.724 14.735 44.827 38 AA_U78C79:G84A85_AA A 78 ? A 85 ? A 79 ? A 84 ? 1 A C 79 1_555 A G 84 1_555 A G 80 1_555 A A 83 1_555 -2.717 -1.007 1.943 0.996 -16.163 47.603 -0.446 3.253 2.106 -19.381 -1.194 50.130 39 AA_C79G80:A83G84_AA A 79 ? A 84 ? A 80 ? A 83 ? # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Cancer Institute (NIH/NCI)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _space_group.crystal_system triclinic _space_group.name_H-M_alt 'P 1' _space_group.IT_number 1 _space_group.name_Hall 'P 1' _space_group.id 1 # _atom_sites.entry_id 8TKJ _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H MG N O P # loop_ #