HEADER DNA BINDING PROTEIN/DNA 26-JUL-23 8TLE TITLE CDCA7 (MOUSE) BINDS NON-B-FORM 36-MER DNA OLIGO (SG C2-FORM 1) COMPND MOL_ID: 1; COMPND 2 MOLECULE: CELL DIVISION CYCLE-ASSOCIATED PROTEIN 7; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: SSDNA; COMPND 7 CHAIN: X; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: CDCA7; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-CODON-PLUS (DE3)-RIL; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 12 ORGANISM_TAXID: 10090; SOURCE 13 OTHER_DETAILS: N VITRO SELEX SCREENING KEYWDS PROTEIN-DNA COMPLEX, DNA BINDING PROTEIN, ZINC FINGERS, CHROMATIN KEYWDS 2 ARCHITECTURE, DNA BINDING PROTEIN-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.R.HORTON,R.REN,X.CHENG REVDAT 2 28-AUG-24 8TLE 1 JRNL REVDAT 1 21-AUG-24 8TLE 0 JRNL AUTH S.HARDIKAR,R.REN,Z.YING,J.R.HORTON,M.D.BRAMBLE,B.LIU,Y.LU, JRNL AUTH 2 B.LIU,J.DAN,X.ZHANG,X.CHENG,T.CHEN JRNL TITL THE ICF SYNDROME PROTEIN CDCA7 HARBORS A UNIQUE DNA-BINDING JRNL TITL 2 DOMAIN THAT RECOGNIZES A CPG DYAD IN THE CONTEXT OF A NON-B JRNL TITL 3 DNA. JRNL REF BIORXIV 2023 JRNL REFN ISSN 2692-8205 JRNL PMID 38168392 JRNL DOI 10.1101/2023.12.15.571946 REMARK 2 REMARK 2 RESOLUTION. 2.08 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.08 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.38 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.8 REMARK 3 NUMBER OF REFLECTIONS : 24958 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.234 REMARK 3 R VALUE (WORKING SET) : 0.232 REMARK 3 FREE R VALUE : 0.262 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 1253 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 30.3800 - 4.3100 0.99 2903 158 0.1712 0.2114 REMARK 3 2 4.3100 - 3.4300 1.00 2868 153 0.1986 0.2350 REMARK 3 3 3.4200 - 2.9900 0.99 2875 151 0.2602 0.2466 REMARK 3 4 2.9900 - 2.7200 1.00 2889 154 0.2969 0.3335 REMARK 3 5 2.7200 - 2.5200 1.00 2899 152 0.2793 0.3505 REMARK 3 6 2.5200 - 2.3800 0.99 2866 149 0.3213 0.3571 REMARK 3 7 2.3800 - 2.2600 0.98 2841 147 0.3498 0.3472 REMARK 3 8 2.2600 - 2.1600 0.89 2572 135 0.3795 0.4451 REMARK 3 9 2.1600 - 2.0800 0.34 992 54 0.4864 0.6361 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.273 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 43.773 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 44.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 91.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 1367 REMARK 3 ANGLE : 0.502 1946 REMARK 3 CHIRALITY : 0.035 211 REMARK 3 PLANARITY : 0.005 177 REMARK 3 DIHEDRAL : 21.539 556 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 244 THROUGH 252 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.1938 12.4507 12.1749 REMARK 3 T TENSOR REMARK 3 T11: 0.8304 T22: 0.8807 REMARK 3 T33: 0.4183 T12: -0.0574 REMARK 3 T13: 0.0790 T23: 0.0434 REMARK 3 L TENSOR REMARK 3 L11: 0.0924 L22: 0.0021 REMARK 3 L33: 0.4109 L12: 0.0585 REMARK 3 L13: -0.0232 L23: -0.0069 REMARK 3 S TENSOR REMARK 3 S11: -0.5068 S12: -0.4292 S13: 0.4868 REMARK 3 S21: -0.5997 S22: 0.6987 S23: 0.5583 REMARK 3 S31: 0.2025 S32: 0.5771 S33: -0.0145 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 253 THROUGH 262 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.9026 13.3615 7.1800 REMARK 3 T TENSOR REMARK 3 T11: 1.1770 T22: 1.0147 REMARK 3 T33: 1.3403 T12: -0.1101 REMARK 3 T13: 0.5051 T23: 0.1393 REMARK 3 L TENSOR REMARK 3 L11: 0.0461 L22: 0.1543 REMARK 3 L33: 0.0725 L12: -0.0883 REMARK 3 L13: 0.0059 L23: -0.0628 REMARK 3 S TENSOR REMARK 3 S11: -0.2847 S12: 0.7938 S13: 0.7091 REMARK 3 S21: -0.9087 S22: -0.0696 S23: -0.6546 REMARK 3 S31: -0.2345 S32: -0.1874 S33: -0.0006 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 263 THROUGH 297 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.9745 10.7392 21.6610 REMARK 3 T TENSOR REMARK 3 T11: 0.5309 T22: 0.4899 REMARK 3 T33: 0.9545 T12: -0.0162 REMARK 3 T13: 0.0081 T23: 0.0304 REMARK 3 L TENSOR REMARK 3 L11: 0.6604 L22: 0.2504 REMARK 3 L33: 0.9828 L12: 0.0440 REMARK 3 L13: -0.2947 L23: -0.3315 REMARK 3 S TENSOR REMARK 3 S11: -0.2967 S12: -0.2429 S13: 0.0457 REMARK 3 S21: -0.3483 S22: -0.3003 S23: -1.3023 REMARK 3 S31: -0.2310 S32: -0.0241 S33: -0.0433 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 298 THROUGH 335 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.0674 1.5944 14.4415 REMARK 3 T TENSOR REMARK 3 T11: 0.5850 T22: 0.5087 REMARK 3 T33: 0.7148 T12: 0.0089 REMARK 3 T13: 0.2188 T23: 0.0817 REMARK 3 L TENSOR REMARK 3 L11: 0.1651 L22: 0.6627 REMARK 3 L33: 0.9883 L12: 0.1428 REMARK 3 L13: -0.2724 L23: 0.3556 REMARK 3 S TENSOR REMARK 3 S11: -0.1120 S12: 0.1771 S13: 0.2390 REMARK 3 S21: -0.4074 S22: -0.0567 S23: -1.0951 REMARK 3 S31: 0.2186 S32: -0.1685 S33: -0.0094 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 336 THROUGH 346 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.6794 -4.4455 25.2593 REMARK 3 T TENSOR REMARK 3 T11: 0.6335 T22: 0.6931 REMARK 3 T33: 0.5268 T12: -0.0154 REMARK 3 T13: -0.1185 T23: 0.0447 REMARK 3 L TENSOR REMARK 3 L11: 0.6501 L22: 0.8688 REMARK 3 L33: 0.1488 L12: 0.7562 REMARK 3 L13: -0.3045 L23: -0.3397 REMARK 3 S TENSOR REMARK 3 S11: -0.4523 S12: -1.0403 S13: -1.2549 REMARK 3 S21: -0.2506 S22: -0.3652 S23: -0.2644 REMARK 3 S31: -0.5347 S32: -0.5078 S33: -0.0895 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'X' AND (RESID 8 THROUGH 12 ) REMARK 3 ORIGIN FOR THE GROUP (A): -48.1361 -2.9483 12.8724 REMARK 3 T TENSOR REMARK 3 T11: 0.7417 T22: 0.8557 REMARK 3 T33: 1.8899 T12: -0.2179 REMARK 3 T13: -0.2399 T23: -0.0844 REMARK 3 L TENSOR REMARK 3 L11: 0.0007 L22: 0.0225 REMARK 3 L33: 0.0948 L12: 0.0057 REMARK 3 L13: 0.0374 L23: 0.0693 REMARK 3 S TENSOR REMARK 3 S11: 0.0203 S12: 0.5397 S13: 0.0788 REMARK 3 S21: -0.2422 S22: 0.1153 S23: 0.5344 REMARK 3 S31: 0.5147 S32: -0.1371 S33: -0.0001 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'X' AND (RESID 13 THROUGH 30 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.3391 6.3477 23.0205 REMARK 3 T TENSOR REMARK 3 T11: 0.5495 T22: 0.7152 REMARK 3 T33: 0.4903 T12: -0.0410 REMARK 3 T13: -0.0390 T23: -0.0516 REMARK 3 L TENSOR REMARK 3 L11: 0.3998 L22: 2.3476 REMARK 3 L33: -0.8719 L12: -0.6565 REMARK 3 L13: 0.3684 L23: 0.2250 REMARK 3 S TENSOR REMARK 3 S11: -0.0865 S12: -0.0116 S13: -0.4862 REMARK 3 S21: 0.0084 S22: 0.2580 S23: -0.4925 REMARK 3 S31: -0.0514 S32: -0.1590 S33: 0.2426 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8TLE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-JUL-23. REMARK 100 THE DEPOSITION ID IS D_1000275962. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-MAR-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25246 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.080 REMARK 200 RESOLUTION RANGE LOW (A) : 30.380 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : 0.16500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.08 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.49000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M MGCL2, 0.1 M TRIS PH8.5, REMARK 280 25%PEG3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 44.33300 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.38400 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 44.33300 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 30.38400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -70.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, X REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -22.67484 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 43.53940 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 MG MG X 101 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 239 REMARK 465 PRO A 240 REMARK 465 LEU A 241 REMARK 465 GLY A 242 REMARK 465 SER A 243 REMARK 465 ASP A 347 REMARK 465 GLY A 348 REMARK 465 ARG A 349 REMARK 465 CYS A 350 REMARK 465 ALA A 351 REMARK 465 THR A 352 REMARK 465 GLY A 353 REMARK 465 VAL A 354 REMARK 465 LEU A 355 REMARK 465 VAL A 356 REMARK 465 TYR A 357 REMARK 465 LEU A 358 REMARK 465 ALA A 359 REMARK 465 LYS A 360 REMARK 465 TYR A 361 REMARK 465 HIS A 362 REMARK 465 GLY A 363 REMARK 465 PHE A 364 REMARK 465 GLY A 365 REMARK 465 ASN A 366 REMARK 465 VAL A 367 REMARK 465 HIS A 368 REMARK 465 ALA A 369 REMARK 465 TYR A 370 REMARK 465 LEU A 371 REMARK 465 LYS A 372 REMARK 465 SER A 373 REMARK 465 LEU A 374 REMARK 465 LYS A 375 REMARK 465 GLN A 376 REMARK 465 GLU A 377 REMARK 465 PHE A 378 REMARK 465 GLU A 379 REMARK 465 MET A 380 REMARK 465 GLN A 381 REMARK 465 ALA A 382 REMARK 465 DA X 1 REMARK 465 DG X 2 REMARK 465 DC X 3 REMARK 465 DG X 4 REMARK 465 DA X 5 REMARK 465 DC X 6 REMARK 465 DG X 7 REMARK 465 DG X 31 REMARK 465 DT X 32 REMARK 465 DC X 33 REMARK 465 DG X 34 REMARK 465 DC X 35 REMARK 465 DA X 36 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 346 CG CD NE CZ NH1 NH2 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 281 SG REMARK 620 2 CYS A 284 SG 107.4 REMARK 620 3 CYS A 308 SG 105.5 119.9 REMARK 620 4 CYS A 311 SG 113.0 111.4 99.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 282 NE2 REMARK 620 2 CYS A 338 SG 104.5 REMARK 620 3 CYS A 340 SG 114.7 110.7 REMARK 620 4 CYS A 343 SG 115.9 114.9 96.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 403 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 295 SG REMARK 620 2 CYS A 300 SG 115.4 REMARK 620 3 CYS A 331 SG 108.9 114.7 REMARK 620 4 CYS A 334 SG 114.5 106.1 95.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG X 101 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG X 20 OP1 REMARK 620 2 DG X 20 OP1 0.0 REMARK 620 3 HOH X 203 O 79.6 79.6 REMARK 620 4 HOH X 203 O 162.2 162.2 114.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG X 102 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH X 202 O REMARK 620 2 HOH X 204 O 98.8 REMARK 620 3 HOH X 207 O 130.0 88.4 REMARK 620 4 HOH X 208 O 68.2 116.1 64.4 REMARK 620 N 1 2 3 DBREF 8TLE A 242 382 UNP Q9D0M2 CDCA7_MOUSE 242 382 DBREF 8TLE X 1 36 PDB 8TLE 8TLE 1 36 SEQADV 8TLE GLY A 239 UNP Q9D0M2 EXPRESSION TAG SEQADV 8TLE PRO A 240 UNP Q9D0M2 EXPRESSION TAG SEQADV 8TLE LEU A 241 UNP Q9D0M2 EXPRESSION TAG SEQRES 1 A 144 GLY PRO LEU GLY SER MET THR LEU PRO HIS ILE ILE ARG SEQRES 2 A 144 PRO VAL GLU GLU VAL THR GLU GLU GLU ILE ARG ASN ILE SEQRES 3 A 144 CYS SER ASN SER ARG GLU LYS ILE TYR ASN ARG SER LEU SEQRES 4 A 144 GLY SER THR CYS HIS GLN CYS ARG GLN LYS THR THR ASP SEQRES 5 A 144 THR LYS THR ASN CYS ARG ASN PRO ASP CYS TRP GLY ILE SEQRES 6 A 144 ARG GLY GLN PHE CYS GLY PRO CYS LEU ARG ASN ARG TYR SEQRES 7 A 144 GLY GLU GLU VAL LYS ASP ALA LEU LEU ASP PRO ASN TRP SEQRES 8 A 144 HIS CYS PRO PRO CYS ARG GLY ILE CYS ASN CYS SER PHE SEQRES 9 A 144 CYS ARG GLN ARG ASP GLY ARG CYS ALA THR GLY VAL LEU SEQRES 10 A 144 VAL TYR LEU ALA LYS TYR HIS GLY PHE GLY ASN VAL HIS SEQRES 11 A 144 ALA TYR LEU LYS SER LEU LYS GLN GLU PHE GLU MET GLN SEQRES 12 A 144 ALA SEQRES 1 X 36 DA DG DC DG DA DC DG DC DC DC DT DG DT SEQRES 2 X 36 DC DG DC DT DG DA DG DA DA DG DC DG DT SEQRES 3 X 36 DT DT DG DC DG DT DC DG DC DA HET ZN A 401 1 HET ZN A 402 1 HET ZN A 403 1 HET MG X 101 1 HET MG X 102 1 HET MG X 103 1 HETNAM ZN ZINC ION HETNAM MG MAGNESIUM ION FORMUL 3 ZN 3(ZN 2+) FORMUL 6 MG 3(MG 2+) FORMUL 9 HOH *12(H2 O) HELIX 1 AA1 PRO A 252 VAL A 256 5 5 HELIX 2 AA2 THR A 257 ASN A 263 1 7 HELIX 3 AA3 ASN A 267 LYS A 271 5 5 HELIX 4 AA4 CYS A 308 GLY A 317 1 10 HELIX 5 AA5 GLU A 319 ASP A 326 1 8 HELIX 6 AA6 CYS A 340 ARG A 346 1 7 SHEET 1 AA1 2 SER A 279 THR A 280 0 SHEET 2 AA1 2 LYS A 287 THR A 288 -1 O THR A 288 N SER A 279 LINK SG CYS A 281 ZN ZN A 401 1555 1555 2.32 LINK NE2 HIS A 282 ZN ZN A 402 1555 1555 2.04 LINK SG CYS A 284 ZN ZN A 401 1555 1555 2.29 LINK SG CYS A 295 ZN ZN A 403 1555 1555 2.30 LINK SG CYS A 300 ZN ZN A 403 1555 1555 2.34 LINK SG CYS A 308 ZN ZN A 401 1555 1555 2.28 LINK SG CYS A 311 ZN ZN A 401 1555 1555 2.28 LINK SG CYS A 331 ZN ZN A 403 1555 1555 2.26 LINK SG CYS A 334 ZN ZN A 403 1555 1555 2.28 LINK SG CYS A 338 ZN ZN A 402 1555 1555 2.30 LINK SG CYS A 340 ZN ZN A 402 1555 1555 2.28 LINK SG CYS A 343 ZN ZN A 402 1555 1555 2.27 LINK OP1 DG X 20 MG A MG X 101 1555 1555 2.09 LINK OP1 DG X 20 MG A MG X 101 1555 2556 2.10 LINK MG A MG X 101 O HOH X 203 1555 1555 2.08 LINK MG A MG X 101 O HOH X 203 1555 2556 2.08 LINK MG MG X 102 O HOH X 202 1555 1555 2.10 LINK MG MG X 102 O HOH X 204 1555 1555 2.09 LINK MG MG X 102 O HOH X 207 1555 1555 2.06 LINK MG MG X 102 O HOH X 208 1555 1555 2.27 LINK MG MG X 103 O HOH X 205 1555 1555 2.73 CRYST1 88.666 60.768 49.090 90.00 117.51 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011278 0.000000 0.005874 0.00000 SCALE2 0.000000 0.016456 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022968 0.00000