HEADER TRANSCRIPTION 27-JUL-23 8TLO TITLE CRYSTAL STRUCTURE ANALYSIS OF BCL11A IN COMPLEX WITH DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: B-CELL LYMPHOMA/LEUKEMIA 11A; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: BCL-11A,B-CELL CLL/LYMPHOMA 11A,COUP-TF-INTERACTING PROTEIN COMPND 5 1,ECOTROPIC VIRAL INTEGRATION SITE 9 PROTEIN HOMOLOG,EVI-9,ZINC COMPND 6 FINGER PROTEIN 856; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: DNA (5'- COMPND 10 D(P*CP*GP*AP*CP*CP*GP*CP*AP*TP*TP*GP*GP*TP*CP*AP*AP*GP*CP*G)-3'); COMPND 11 CHAIN: B; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: DNA (5'- COMPND 15 D(P*GP*CP*TP*TP*GP*AP*CP*CP*AP*AP*TP*GP*CP*GP*GP*TP*CP*GP*C)-3'); COMPND 16 CHAIN: C; COMPND 17 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BCL11A, CTIP1, EVI9, KIAA1809, ZNF856; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 MOL_ID: 3; SOURCE 13 SYNTHETIC: YES; SOURCE 14 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 15 ORGANISM_TAXID: 9606 KEYWDS TRANSCRIPTION FACTOR, DNA-BINDING, ZN FINGER, TRANSCRIPTION-DNA KEYWDS 2 COMPLEX, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR H.-S.SEO,S.DHE-PAGANON REVDAT 1 14-AUG-24 8TLO 0 JRNL AUTH H.-S.SEO,S.DHE-PAGANON JRNL TITL CRYSTAL STRUCTURE ANALYSIS OF BCL11A IN COMPLEX WITH DNA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.76 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.76 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 55.45 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 13429 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.253 REMARK 3 R VALUE (WORKING SET) : 0.252 REMARK 3 FREE R VALUE : 0.269 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 658 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 55.4500 - 4.7200 1.00 2629 151 0.1975 0.2238 REMARK 3 2 4.7200 - 3.7500 0.99 2582 125 0.2261 0.2429 REMARK 3 3 3.7500 - 3.2700 0.97 2526 107 0.3308 0.3360 REMARK 3 4 3.2700 - 2.9700 0.99 2550 137 0.4745 0.4251 REMARK 3 5 2.9700 - 2.7600 0.98 2484 138 0.7076 0.6782 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.640 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 51.130 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 NULL REMARK 3 ANGLE : 0.825 NULL REMARK 3 CHIRALITY : 0.038 248 REMARK 3 PLANARITY : 0.008 151 REMARK 3 DIHEDRAL : 32.923 467 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 741 THROUGH 770 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.5056 -2.9440 -1.3971 REMARK 3 T TENSOR REMARK 3 T11: 1.5819 T22: 1.4598 REMARK 3 T33: 1.7275 T12: -0.0195 REMARK 3 T13: -0.0160 T23: 0.1849 REMARK 3 L TENSOR REMARK 3 L11: 1.6353 L22: 1.8805 REMARK 3 L33: 6.9085 L12: -1.7623 REMARK 3 L13: -0.3207 L23: 1.6128 REMARK 3 S TENSOR REMARK 3 S11: 0.0155 S12: 0.3059 S13: -0.2800 REMARK 3 S21: -0.6502 S22: 0.4065 S23: 2.3868 REMARK 3 S31: 0.3451 S32: 0.0158 S33: -0.0003 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 771 THROUGH 811 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.7196 19.4513 10.4909 REMARK 3 T TENSOR REMARK 3 T11: 1.6996 T22: 1.6011 REMARK 3 T33: 1.1410 T12: -0.0732 REMARK 3 T13: 0.0618 T23: 0.0355 REMARK 3 L TENSOR REMARK 3 L11: 3.5158 L22: 2.5856 REMARK 3 L33: 4.4460 L12: 1.0932 REMARK 3 L13: 2.6908 L23: -0.0079 REMARK 3 S TENSOR REMARK 3 S11: -0.1666 S12: -0.3134 S13: 0.6303 REMARK 3 S21: 0.1778 S22: -0.5295 S23: -1.3920 REMARK 3 S31: -0.3849 S32: 0.5795 S33: -0.0011 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 812 THROUGH 825 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.2523 20.4029 16.1521 REMARK 3 T TENSOR REMARK 3 T11: 2.2237 T22: 1.4064 REMARK 3 T33: 1.2958 T12: -0.0860 REMARK 3 T13: -0.5678 T23: 0.1272 REMARK 3 L TENSOR REMARK 3 L11: 4.7713 L22: 4.2901 REMARK 3 L33: 1.3197 L12: 4.4465 REMARK 3 L13: -0.5486 L23: -0.8814 REMARK 3 S TENSOR REMARK 3 S11: -0.8490 S12: 1.0821 S13: -2.2320 REMARK 3 S21: 0.3612 S22: -0.5174 S23: -2.1268 REMARK 3 S31: 2.3182 S32: 0.9176 S33: -0.4828 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.8131 5.8456 27.0993 REMARK 3 T TENSOR REMARK 3 T11: 3.7499 T22: 3.6496 REMARK 3 T33: 2.7607 T12: -0.2312 REMARK 3 T13: -0.7418 T23: 0.4859 REMARK 3 L TENSOR REMARK 3 L11: 1.2816 L22: 2.1249 REMARK 3 L33: 1.2203 L12: 1.1994 REMARK 3 L13: -0.1629 L23: 0.9224 REMARK 3 S TENSOR REMARK 3 S11: 0.5902 S12: -2.6417 S13: -1.4256 REMARK 3 S21: 3.8302 S22: -0.9214 S23: -3.3745 REMARK 3 S31: 0.4382 S32: 1.7873 S33: 0.0003 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 11 THROUGH 19 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.8855 1.4419 7.6857 REMARK 3 T TENSOR REMARK 3 T11: 1.8643 T22: 2.0496 REMARK 3 T33: 2.0318 T12: -0.0710 REMARK 3 T13: -0.1345 T23: 0.2776 REMARK 3 L TENSOR REMARK 3 L11: 0.3102 L22: 1.8483 REMARK 3 L33: -0.0853 L12: -0.5618 REMARK 3 L13: 0.1840 L23: -0.4837 REMARK 3 S TENSOR REMARK 3 S11: 0.3849 S12: -0.6761 S13: -0.7858 REMARK 3 S21: -0.1472 S22: -0.2241 S23: -0.6630 REMARK 3 S31: 0.9200 S32: 0.0446 S33: 0.0002 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.6143 3.2982 9.9117 REMARK 3 T TENSOR REMARK 3 T11: 2.3887 T22: 1.9563 REMARK 3 T33: 2.2228 T12: -0.0245 REMARK 3 T13: -0.3850 T23: 0.1767 REMARK 3 L TENSOR REMARK 3 L11: 3.2072 L22: 4.5669 REMARK 3 L33: 4.4034 L12: 0.4393 REMARK 3 L13: -0.8680 L23: -4.5809 REMARK 3 S TENSOR REMARK 3 S11: 1.2766 S12: -0.6362 S13: -2.3112 REMARK 3 S21: 1.3564 S22: -0.0402 S23: -0.1011 REMARK 3 S31: 0.7192 S32: 0.5441 S33: 0.0202 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 11 THROUGH 19 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.4741 6.3338 30.5647 REMARK 3 T TENSOR REMARK 3 T11: 3.5324 T22: 3.6743 REMARK 3 T33: 3.4068 T12: -0.2648 REMARK 3 T13: -1.0447 T23: 0.4746 REMARK 3 L TENSOR REMARK 3 L11: 0.6292 L22: 1.3295 REMARK 3 L33: 0.2822 L12: 0.8305 REMARK 3 L13: -0.2865 L23: -0.6595 REMARK 3 S TENSOR REMARK 3 S11: -0.6567 S12: -2.1635 S13: -0.5913 REMARK 3 S21: 2.2869 S22: -0.2654 S23: -0.7871 REMARK 3 S31: -2.2432 S32: 0.6108 S33: -0.0023 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8TLO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-JUL-23. REMARK 100 THE DEPOSITION ID IS D_1000276183. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-MAR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13593 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.760 REMARK 200 RESOLUTION RANGE LOW (A) : 55.450 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 8.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.3500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.76 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.86 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 77.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG6K AND 0.1M NA CITRATE PH 5.0, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 58.37000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.43500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 58.37000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 30.43500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 726 REMARK 465 PRO A 727 REMARK 465 HIS A 728 REMARK 465 MET A 729 REMARK 465 PRO A 730 REMARK 465 GLY A 731 REMARK 465 ARG A 732 REMARK 465 PRO A 733 REMARK 465 SER A 734 REMARK 465 SER A 735 REMARK 465 LYS A 736 REMARK 465 GLU A 737 REMARK 465 GLY A 738 REMARK 465 ARG A 739 REMARK 465 ARG A 740 REMARK 465 ARG A 826 REMARK 465 VAL A 827 REMARK 465 LEU A 828 REMARK 465 ASN A 829 REMARK 465 ASN A 830 REMARK 465 ASP A 831 REMARK 465 ILE A 832 REMARK 465 LYS A 833 REMARK 465 THR A 834 REMARK 465 GLU A 835 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 794 CG CD OE1 NE2 REMARK 470 VAL A 795 CG1 CG2 REMARK 470 LYS A 797 CG CD CE NZ REMARK 470 ASP A 798 CG OD1 OD2 REMARK 470 GLU A 803 CG CD OE1 OE2 REMARK 470 LYS A 820 CG CD CE NZ REMARK 470 ASP A 825 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 761 CG - CD - NE ANGL. DEV. = -18.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 806 9.21 54.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 744 SG REMARK 620 2 CYS A 747 SG 110.9 REMARK 620 3 HIS A 760 NE2 115.4 125.4 REMARK 620 4 HIS A 764 NE2 96.8 101.6 100.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1002 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 772 SG REMARK 620 2 CYS A 775 SG 117.9 REMARK 620 3 HIS A 788 NE2 112.6 103.5 REMARK 620 4 HIS A 792 NE2 117.8 102.3 100.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1003 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 802 SG REMARK 620 2 CYS A 805 SG 95.6 REMARK 620 3 HIS A 818 NE2 131.6 71.4 REMARK 620 4 HIS A 823 NE2 123.4 120.1 102.2 REMARK 620 N 1 2 3 DBREF 8TLO A 730 835 UNP Q9H165 BC11A_HUMAN 730 835 DBREF 8TLO B 1 19 PDB 8TLO 8TLO 1 19 DBREF 8TLO C 1 19 PDB 8TLO 8TLO 1 19 SEQADV 8TLO GLY A 726 UNP Q9H165 EXPRESSION TAG SEQADV 8TLO PRO A 727 UNP Q9H165 EXPRESSION TAG SEQADV 8TLO HIS A 728 UNP Q9H165 EXPRESSION TAG SEQADV 8TLO MET A 729 UNP Q9H165 EXPRESSION TAG SEQRES 1 A 110 GLY PRO HIS MET PRO GLY ARG PRO SER SER LYS GLU GLY SEQRES 2 A 110 ARG ARG SER ASP THR CYS GLU TYR CYS GLY LYS VAL PHE SEQRES 3 A 110 LYS ASN CYS SER ASN LEU THR VAL HIS ARG ARG SER HIS SEQRES 4 A 110 THR GLY GLU ARG PRO TYR LYS CYS GLU LEU CYS ASN TYR SEQRES 5 A 110 ALA CYS ALA GLN SER SER LYS LEU THR ARG HIS MET LYS SEQRES 6 A 110 THR HIS GLY GLN VAL GLY LYS ASP VAL TYR LYS CYS GLU SEQRES 7 A 110 ILE CYS LYS MET PRO PHE SER VAL TYR SER THR LEU GLU SEQRES 8 A 110 LYS HIS MET LYS LYS TRP HIS SER ASP ARG VAL LEU ASN SEQRES 9 A 110 ASN ASP ILE LYS THR GLU SEQRES 1 B 19 DC DG DA DC DC DG DC DA DT DT DG DG DT SEQRES 2 B 19 DC DA DA DG DC DG SEQRES 1 C 19 DG DC DT DT DG DA DC DC DA DA DT DG DC SEQRES 2 C 19 DG DG DT DC DG DC HET ZN A1001 1 HET ZN A1002 1 HET ZN A1003 1 HETNAM ZN ZINC ION FORMUL 4 ZN 3(ZN 2+) HELIX 1 AA1 ASN A 753 GLY A 766 1 14 HELIX 2 AA2 GLN A 781 LYS A 790 1 10 HELIX 3 AA3 THR A 791 GLY A 793 5 3 HELIX 4 AA4 VAL A 811 SER A 813 5 3 HELIX 5 AA5 THR A 814 HIS A 823 1 10 SHEET 1 AA1 2 TYR A 770 LYS A 771 0 SHEET 2 AA1 2 ALA A 778 CYS A 779 -1 O CYS A 779 N TYR A 770 SHEET 1 AA2 2 TYR A 800 LYS A 801 0 SHEET 2 AA2 2 PRO A 808 PHE A 809 -1 O PHE A 809 N TYR A 800 LINK SG CYS A 744 ZN ZN A1001 1555 1555 2.30 LINK SG CYS A 747 ZN ZN A1001 1555 1555 2.31 LINK NE2 HIS A 760 ZN ZN A1001 1555 1555 2.07 LINK NE2 HIS A 764 ZN ZN A1001 1555 1555 2.05 LINK SG CYS A 772 ZN ZN A1002 1555 1555 2.30 LINK SG CYS A 775 ZN ZN A1002 1555 1555 2.31 LINK NE2 HIS A 788 ZN ZN A1002 1555 1555 2.02 LINK NE2 HIS A 792 ZN ZN A1002 1555 1555 2.02 LINK SG CYS A 802 ZN ZN A1003 1555 1555 2.29 LINK SG CYS A 805 ZN ZN A1003 1555 1555 2.27 LINK NE2 HIS A 818 ZN ZN A1003 1555 1555 2.04 LINK NE2 HIS A 823 ZN ZN A1003 1555 1555 1.99 CRYST1 116.740 60.870 78.350 90.00 108.20 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008566 0.000000 0.002816 0.00000 SCALE2 0.000000 0.016428 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013435 0.00000