HEADER IMMUNE SYSTEM 27-JUL-23 8TM0 TITLE PRECLINICAL CHARACTERIZATION OF PAN-NKG2D LIGAND-BINDING NKG2D TITLE 2 RECEPTOR DECOYS COMPND MOL_ID: 1; COMPND 2 MOLECULE: NKG2-D TYPE II INTEGRAL MEMBRANE PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: KILLER CELL LECTIN-LIKE RECEPTOR SUBFAMILY K MEMBER 1,NK COMPND 5 CELL RECEPTOR D,NKG2-D-ACTIVATING NK RECEPTOR; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: MHC CLASS I POLYPEPTIDE-RELATED SEQUENCE A; COMPND 9 CHAIN: C; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KLRK1, KLRK1, D12S2489E, NKG2D; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 GENE: MICA; SOURCE 14 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 15 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS COMPLEX, MICA VARIANT, LINKED NKG2D, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR P.B.RUPERT,R.STRONG REVDAT 1 17-APR-24 8TM0 0 JRNL AUTH P.B.RUPERT,M.BUERGER,E.J.GIRARD,M.FRUTOSO,D.PARRILLA,K.NG, JRNL AUTH 2 T.GOOLEY,V.GROH,R.K.STRONG JRNL TITL PRECLINICAL CHARACTERIZATION OF PAN-NKG2D LIGAND-BINDING JRNL TITL 2 NKG2D RECEPTOR DECOYS. JRNL REF HELIYON V. 10 28583 2024 JRNL REFN ESSN 2405-8440 JRNL PMID 38586421 JRNL DOI 10.1016/J.HELIYON.2024.E28583 REMARK 2 REMARK 2 RESOLUTION. 3.83 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0155 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.83 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 70.02 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 81.1 REMARK 3 NUMBER OF REFLECTIONS : 4290 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.274 REMARK 3 R VALUE (WORKING SET) : 0.269 REMARK 3 FREE R VALUE : 0.362 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 233 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.83 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.93 REMARK 3 REFLECTION IN BIN (WORKING SET) : 77 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 20.66 REMARK 3 BIN R VALUE (WORKING SET) : 0.4590 REMARK 3 BIN FREE R VALUE SET COUNT : 4 REMARK 3 BIN FREE R VALUE : 0.4750 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3283 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 42 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 116.1 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -15.51000 REMARK 3 B22 (A**2) : 13.35000 REMARK 3 B33 (A**2) : 2.15000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 1.330 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 1.045 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 188.232 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.883 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.722 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3420 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2979 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4658 ; 1.360 ; 1.942 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6862 ; 0.856 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 413 ; 6.294 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 161 ;36.057 ;24.907 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 537 ;13.200 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;15.101 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 500 ; 0.065 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3902 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 818 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1661 ; 3.271 ; 8.317 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1660 ; 3.270 ; 8.318 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2071 ; 5.716 ;12.472 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2072 ; 5.715 ;12.471 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1759 ; 3.139 ; 8.727 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1760 ; 3.138 ; 8.730 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2588 ; 5.510 ;13.002 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 14569 ;13.370 ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 14570 ;13.370 ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 92 A 224 REMARK 3 ORIGIN FOR THE GROUP (A): 12.814 2.659 30.529 REMARK 3 T TENSOR REMARK 3 T11: 0.6091 T22: 0.0378 REMARK 3 T33: 0.5574 T12: -0.0766 REMARK 3 T13: -0.0375 T23: -0.0202 REMARK 3 L TENSOR REMARK 3 L11: 2.8622 L22: 0.8181 REMARK 3 L33: 1.6470 L12: -1.2738 REMARK 3 L13: 0.7820 L23: -0.8902 REMARK 3 S TENSOR REMARK 3 S11: 0.0025 S12: -0.2745 S13: -0.0819 REMARK 3 S21: 0.0309 S22: 0.0972 S23: 0.0813 REMARK 3 S31: 0.3182 S32: -0.0947 S33: -0.0997 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 225 A 263 REMARK 3 ORIGIN FOR THE GROUP (A): 9.614 4.798 4.722 REMARK 3 T TENSOR REMARK 3 T11: 0.4997 T22: 0.1361 REMARK 3 T33: 0.5754 T12: -0.0038 REMARK 3 T13: -0.0380 T23: 0.0648 REMARK 3 L TENSOR REMARK 3 L11: 0.3896 L22: 2.1542 REMARK 3 L33: 2.5198 L12: 0.0138 REMARK 3 L13: 0.7250 L23: 0.2058 REMARK 3 S TENSOR REMARK 3 S11: 0.0911 S12: -0.1647 S13: -0.0822 REMARK 3 S21: -0.1503 S22: -0.0504 S23: 0.1368 REMARK 3 S31: 0.0210 S32: -0.0531 S33: -0.0407 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 2 C 175 REMARK 3 ORIGIN FOR THE GROUP (A): 35.701 -0.812 12.857 REMARK 3 T TENSOR REMARK 3 T11: 0.4127 T22: 0.0168 REMARK 3 T33: 0.5094 T12: -0.0681 REMARK 3 T13: 0.0049 T23: 0.0044 REMARK 3 L TENSOR REMARK 3 L11: 2.5345 L22: 0.3892 REMARK 3 L33: 3.6447 L12: -0.2765 REMARK 3 L13: -0.0402 L23: -1.1336 REMARK 3 S TENSOR REMARK 3 S11: 0.0933 S12: 0.0278 S13: 0.1034 REMARK 3 S21: -0.0440 S22: 0.0377 S23: -0.0124 REMARK 3 S31: 0.1233 S32: -0.1480 S33: -0.1311 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8TM0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-JUL-23. REMARK 100 THE DEPOSITION ID IS D_1000276200. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-APR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97741 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 4537 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.830 REMARK 200 RESOLUTION RANGE LOW (A) : 70.020 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 86.3 REMARK 200 DATA REDUNDANCY : 2.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 4.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 4.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.2 REMARK 200 DATA REDUNDANCY IN SHELL : 2.70 REMARK 200 R MERGE FOR SHELL (I) : 0.72200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HEPES (PH 7.0), JEFFAMINE ED-2001, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.04150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.02000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.17700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 70.02000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.04150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 34.17700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 SER A 2 REMARK 465 ASN A 3 REMARK 465 GLN A 4 REMARK 465 GLU A 5 REMARK 465 VAL A 6 REMARK 465 GLN A 7 REMARK 465 ILE A 8 REMARK 465 PRO A 9 REMARK 465 LEU A 10 REMARK 465 VAL A 264 REMARK 465 LYS C 44 REMARK 465 PRO C 45 REMARK 465 GLN C 46 REMARK 465 GLY C 47 REMARK 465 GLN C 48 REMARK 465 TRP C 49 REMARK 465 ALA C 50 REMARK 465 GLU C 51 REMARK 465 ASP C 52 REMARK 465 VAL C 53 REMARK 465 LEU C 54 REMARK 465 GLY C 55 REMARK 465 VAL C 176 REMARK 465 VAL C 177 REMARK 465 LEU C 178 REMARK 465 ARG C 179 REMARK 465 ARG C 180 REMARK 465 THR C 181 REMARK 465 VAL C 182 REMARK 465 HIS C 183 REMARK 465 HIS C 184 REMARK 465 HIS C 185 REMARK 465 HIS C 186 REMARK 465 HIS C 187 REMARK 465 HIS C 188 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 20 CG CD CE NZ REMARK 470 LYS A 55 CG CD CE NZ REMARK 470 LEU A 64 CG CD1 CD2 REMARK 470 GLN A 86 CG CD OE1 NE2 REMARK 470 ILE A 92 CG1 CG2 CD1 REMARK 470 GLU A 102 CG CD OE1 OE2 REMARK 470 LYS A 105 CG CD CE NZ REMARK 470 SER A 114 OG REMARK 470 LYS A 149 CG CD CE NZ REMARK 470 GLU A 164 CG CD OE1 OE2 REMARK 470 LYS A 166 CG CD CE NZ REMARK 470 LYS A 188 CG CD CE NZ REMARK 470 LEU A 193 CG CD1 CD2 REMARK 470 ARG A 262 CG CD NE CZ NH1 NH2 REMARK 470 THR A 263 OG1 CG2 REMARK 470 GLU C 1 CG CD OE1 OE2 REMARK 470 ARG C 38 CG CD NE CZ NH1 NH2 REMARK 470 GLN C 39 CG CD OE1 NE2 REMARK 470 LYS C 40 CG CD CE NZ REMARK 470 ARG C 42 CG CD NE CZ NH1 NH2 REMARK 470 ASN C 56 CG OD1 ND2 REMARK 470 LYS C 57 CG CD CE NZ REMARK 470 ARG C 61 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 64 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 71 CG CD CE NZ REMARK 470 LYS C 84 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU C 152 OH TYR C 157 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 12 67.92 62.38 REMARK 500 SER A 70 -167.36 67.96 REMARK 500 LEU A 97 -65.29 -125.52 REMARK 500 MET A 103 -69.10 -100.63 REMARK 500 SER A 114 33.74 74.75 REMARK 500 ASN A 150 47.39 -104.44 REMARK 500 ASN A 156 -8.95 67.69 REMARK 500 SER A 187 106.95 -167.89 REMARK 500 SER A 199 -166.24 68.42 REMARK 500 ASP C 82 -90.35 -98.80 REMARK 500 LYS C 84 51.96 -107.16 REMARK 500 SER C 174 -74.73 -86.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 NAG B 1 REMARK 610 NAG C 201 DBREF 8TM0 A 3 135 UNP P26718 NKG2D_HUMAN 84 216 DBREF 8TM0 A 136 264 UNP P26718 NKG2D_HUMAN 88 216 DBREF 8TM0 C 1 182 UNP Q29983 MICA_HUMAN 24 205 SEQADV 8TM0 GLY A 1 UNP P26718 EXPRESSION TAG SEQADV 8TM0 SER A 2 UNP P26718 EXPRESSION TAG SEQADV 8TM0 TRP C 69 UNP Q29983 ASN 92 CONFLICT SEQADV 8TM0 LEU C 125 UNP Q29983 LYS 148 CONFLICT SEQADV 8TM0 GLU C 152 UNP Q29983 LYS 175 CONFLICT SEQADV 8TM0 ASP C 154 UNP Q29983 LYS 177 CONFLICT SEQADV 8TM0 ARG C 161 UNP Q29983 HIS 184 CONFLICT SEQADV 8TM0 SER C 166 UNP Q29983 GLN 189 CONFLICT SEQADV 8TM0 HIS C 183 UNP Q29983 EXPRESSION TAG SEQADV 8TM0 HIS C 184 UNP Q29983 EXPRESSION TAG SEQADV 8TM0 HIS C 185 UNP Q29983 EXPRESSION TAG SEQADV 8TM0 HIS C 186 UNP Q29983 EXPRESSION TAG SEQADV 8TM0 HIS C 187 UNP Q29983 EXPRESSION TAG SEQADV 8TM0 HIS C 188 UNP Q29983 EXPRESSION TAG SEQRES 1 A 264 GLY SER ASN GLN GLU VAL GLN ILE PRO LEU THR GLU SER SEQRES 2 A 264 TYR CYS GLY PRO CYS PRO LYS ASN TRP ILE CYS TYR LYS SEQRES 3 A 264 ASN ASN CYS TYR GLN PHE PHE ASP GLU SER LYS ASN TRP SEQRES 4 A 264 TYR GLU SER GLN ALA SER CYS MET SER GLN ASN ALA SER SEQRES 5 A 264 LEU LEU LYS VAL TYR SER LYS GLU ASP GLN ASP LEU LEU SEQRES 6 A 264 LYS LEU VAL LYS SER TYR HIS TRP MET GLY LEU VAL HIS SEQRES 7 A 264 ILE PRO THR ASN GLY SER TRP GLN TRP GLU ASP GLY SER SEQRES 8 A 264 ILE LEU SER PRO ASN LEU LEU THR ILE ILE GLU MET GLN SEQRES 9 A 264 LYS GLY ASP CYS ALA LEU TYR ALA SER SER PHE LYS GLY SEQRES 10 A 264 TYR ILE GLU ASN CYS SER THR PRO ASN THR TYR ILE CYS SEQRES 11 A 264 MET GLN ARG THR VAL GLN ILE PRO LEU THR GLU SER TYR SEQRES 12 A 264 CYS GLY PRO CYS PRO LYS ASN TRP ILE CYS TYR LYS ASN SEQRES 13 A 264 ASN CYS TYR GLN PHE PHE ASP GLU SER LYS ASN TRP TYR SEQRES 14 A 264 GLU SER GLN ALA SER CYS MET SER GLN ASN ALA SER LEU SEQRES 15 A 264 LEU LYS VAL TYR SER LYS GLU ASP GLN ASP LEU LEU LYS SEQRES 16 A 264 LEU VAL LYS SER TYR HIS TRP MET GLY LEU VAL HIS ILE SEQRES 17 A 264 PRO THR ASN GLY SER TRP GLN TRP GLU ASP GLY SER ILE SEQRES 18 A 264 LEU SER PRO ASN LEU LEU THR ILE ILE GLU MET GLN LYS SEQRES 19 A 264 GLY ASP CYS ALA LEU TYR ALA SER SER PHE LYS GLY TYR SEQRES 20 A 264 ILE GLU ASN CYS SER THR PRO ASN THR TYR ILE CYS MET SEQRES 21 A 264 GLN ARG THR VAL SEQRES 1 C 188 GLU PRO HIS SER LEU ARG TYR ASN LEU THR VAL LEU SER SEQRES 2 C 188 TRP ASP GLY SER VAL GLN SER GLY PHE LEU THR GLU VAL SEQRES 3 C 188 HIS LEU ASP GLY GLN PRO PHE LEU ARG CYS ASP ARG GLN SEQRES 4 C 188 LYS CYS ARG ALA LYS PRO GLN GLY GLN TRP ALA GLU ASP SEQRES 5 C 188 VAL LEU GLY ASN LYS THR TRP ASP ARG GLU THR ARG ASP SEQRES 6 C 188 LEU THR GLY TRP GLY LYS ASP LEU ARG MET THR LEU ALA SEQRES 7 C 188 HIS ILE LYS ASP GLN LYS GLU GLY LEU HIS SER LEU GLN SEQRES 8 C 188 GLU ILE ARG VAL CYS GLU ILE HIS GLU ASP ASN SER THR SEQRES 9 C 188 ARG SER SER GLN HIS PHE TYR TYR ASP GLY GLU LEU PHE SEQRES 10 C 188 LEU SER GLN ASN LEU GLU THR LEU GLU TRP THR MET PRO SEQRES 11 C 188 GLN SER SER ARG ALA GLN THR LEU ALA MET ASN VAL ARG SEQRES 12 C 188 ASN PHE LEU LYS GLU ASP ALA MET GLU THR ASP THR HIS SEQRES 13 C 188 TYR HIS ALA MET ARG ALA ASP CYS LEU SER GLU LEU ARG SEQRES 14 C 188 ARG TYR LEU LYS SER GLY VAL VAL LEU ARG ARG THR VAL SEQRES 15 C 188 HIS HIS HIS HIS HIS HIS HET NAG B 1 14 HET NAG B 2 14 HET NAG C 201 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 3 NAG 3(C8 H15 N O6) HELIX 1 AA1 ASN A 38 GLN A 49 1 12 HELIX 2 AA2 GLN A 62 VAL A 68 5 7 HELIX 3 AA3 ASN A 167 GLN A 178 1 12 HELIX 4 AA4 GLN A 191 VAL A 197 5 7 HELIX 5 AA5 TRP C 59 HIS C 79 1 21 HELIX 6 AA6 SER C 132 ASP C 149 1 18 HELIX 7 AA7 THR C 153 GLY C 175 1 23 SHEET 1 AA1 2 SER A 13 CYS A 18 0 SHEET 2 AA1 2 SER A 142 CYS A 147 -1 O SER A 142 N CYS A 18 SHEET 1 AA2 6 SER A 52 LEU A 53 0 SHEET 2 AA2 6 ASN A 126 ARG A 133 -1 O MET A 131 N SER A 52 SHEET 3 AA2 6 HIS A 72 HIS A 78 1 N TRP A 73 O THR A 127 SHEET 4 AA2 6 CYS A 108 ALA A 112 -1 O TYR A 111 N HIS A 72 SHEET 5 AA2 6 LYS A 116 GLU A 120 -1 O TYR A 118 N LEU A 110 SHEET 6 AA2 6 THR A 99 ILE A 101 1 N ILE A 101 O GLY A 117 SHEET 1 AA3 9 TRP A 85 TRP A 87 0 SHEET 2 AA3 9 HIS A 72 HIS A 78 -1 N VAL A 77 O GLN A 86 SHEET 3 AA3 9 ASN A 126 ARG A 133 1 O THR A 127 N TRP A 73 SHEET 4 AA3 9 ASN A 28 LYS A 37 -1 N CYS A 29 O GLN A 132 SHEET 5 AA3 9 ILE A 23 CYS A 24 -1 N ILE A 23 O TYR A 30 SHEET 6 AA3 9 ILE A 152 TYR A 154 -1 O CYS A 153 N CYS A 24 SHEET 7 AA3 9 ASN A 157 LYS A 166 -1 O ASN A 157 N TYR A 154 SHEET 8 AA3 9 ASN A 255 MET A 260 -1 O ASN A 255 N LYS A 166 SHEET 9 AA3 9 SER A 181 LEU A 182 -1 N SER A 181 O MET A 260 SHEET 1 AA4 5 SER A 213 GLN A 215 0 SHEET 2 AA4 5 TYR A 200 ILE A 208 -1 N VAL A 206 O GLN A 215 SHEET 3 AA4 5 CYS A 237 ALA A 241 -1 O TYR A 240 N HIS A 201 SHEET 4 AA4 5 LYS A 245 GLU A 249 -1 O TYR A 247 N LEU A 239 SHEET 5 AA4 5 THR A 228 GLU A 231 1 N THR A 228 O GLY A 246 SHEET 1 AA5 5 SER C 17 VAL C 18 0 SHEET 2 AA5 5 HIS C 3 TRP C 14 -1 N TRP C 14 O SER C 17 SHEET 3 AA5 5 LEU C 23 LEU C 28 -1 O GLU C 25 N ASN C 8 SHEET 4 AA5 5 GLN C 31 ASP C 37 -1 O PHE C 33 N VAL C 26 SHEET 5 AA5 5 CYS C 41 ARG C 42 -1 O ARG C 42 N ARG C 35 SHEET 1 AA6 6 SER C 17 VAL C 18 0 SHEET 2 AA6 6 HIS C 3 TRP C 14 -1 N TRP C 14 O SER C 17 SHEET 3 AA6 6 LEU C 87 ILE C 98 -1 O ARG C 94 N TYR C 7 SHEET 4 AA6 6 THR C 104 TYR C 112 -1 O HIS C 109 N ILE C 93 SHEET 5 AA6 6 GLU C 115 ASN C 121 -1 O LEU C 118 N PHE C 110 SHEET 6 AA6 6 GLU C 126 THR C 128 -1 O GLU C 126 N ASN C 121 SSBOND 1 CYS A 15 CYS A 24 1555 1555 2.03 SSBOND 2 CYS A 18 CYS A 29 1555 1555 2.04 SSBOND 3 CYS A 46 CYS A 130 1555 1555 2.05 SSBOND 4 CYS A 108 CYS A 122 1555 1555 2.06 SSBOND 5 CYS A 144 CYS A 153 1555 1555 2.02 SSBOND 6 CYS A 147 CYS A 158 1555 1555 2.05 SSBOND 7 CYS A 175 CYS A 259 1555 1555 2.04 SSBOND 8 CYS A 237 CYS A 251 1555 1555 2.04 SSBOND 9 CYS C 36 CYS C 41 1555 1555 2.03 SSBOND 10 CYS C 96 CYS C 164 1555 1555 2.06 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.44 CRYST1 56.083 68.354 140.040 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017831 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014630 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007141 0.00000