HEADER IMMUNE SYSTEM 27-JUL-23 8TM2 TITLE PRECLINICAL CHARACTERIZATION OF PAN-NKG2D LIGAND-BINDING NKG2D TITLE 2 RECEPTOR DECOYS COMPND MOL_ID: 1; COMPND 2 MOLECULE: NKG2-D TYPE II INTEGRAL MEMBRANE PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: KILLER CELL LECTIN-LIKE RECEPTOR SUBFAMILY K MEMBER 1,NK COMPND 5 CELL RECEPTOR D,NKG2-D-ACTIVATING NK RECEPTOR; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: MHC CLASS I POLYPEPTIDE-RELATED SEQUENCE A; COMPND 9 CHAIN: C; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KLRK1, KLRK1, D12S2489E, NKG2D; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: MICA; SOURCE 13 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 14 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS COMPLEX MICA VARIANT, LINKED NKG2D, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR P.B.RUPERT,R.STRONG REVDAT 1 17-APR-24 8TM2 0 JRNL AUTH P.B.RUPERT,M.BUERGER,E.J.GIRARD,M.FRUTOSO,D.PARRILLA,K.NG, JRNL AUTH 2 T.GOOLEY,V.GROH,R.K.STRONG JRNL TITL PRECLINICAL CHARACTERIZATION OF PAN-NKG2D LIGAND-BINDING JRNL TITL 2 NKG2D RECEPTOR DECOYS. JRNL REF HELIYON V. 10 28583 2024 JRNL REFN ESSN 2405-8440 JRNL PMID 38586421 JRNL DOI 10.1016/J.HELIYON.2024.E28583 REMARK 2 REMARK 2 RESOLUTION. 2.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0155 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 72.69 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 83.0 REMARK 3 NUMBER OF REFLECTIONS : 11066 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.253 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 609 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.92 REMARK 3 REFLECTION IN BIN (WORKING SET) : 793 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 83.07 REMARK 3 BIN R VALUE (WORKING SET) : 0.2750 REMARK 3 BIN FREE R VALUE SET COUNT : 46 REMARK 3 BIN FREE R VALUE : 0.3570 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3325 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 118 REMARK 3 SOLVENT ATOMS : 22 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 55.57 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.64000 REMARK 3 B22 (A**2) : 2.46000 REMARK 3 B33 (A**2) : 1.18000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.437 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.275 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 30.483 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.927 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.904 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3555 ; 0.007 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3123 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4839 ; 1.141 ; 1.966 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7214 ; 0.843 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 417 ; 5.931 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 163 ;34.614 ;24.847 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 564 ;12.540 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;14.119 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 527 ; 0.067 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3979 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 830 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1671 ; 0.664 ; 3.773 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1670 ; 0.664 ; 3.773 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2084 ; 1.222 ; 5.657 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2085 ; 1.222 ; 5.658 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1884 ; 0.904 ; 4.048 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1884 ; 0.904 ; 4.048 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2755 ; 1.535 ; 6.042 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3806 ; 2.599 ;43.471 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3807 ; 2.599 ;43.488 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 92 A 224 REMARK 3 ORIGIN FOR THE GROUP (A): 13.570 3.581 31.662 REMARK 3 T TENSOR REMARK 3 T11: 0.0535 T22: 0.1181 REMARK 3 T33: 0.0159 T12: -0.0355 REMARK 3 T13: -0.0121 T23: 0.0287 REMARK 3 L TENSOR REMARK 3 L11: 6.9454 L22: 2.3514 REMARK 3 L33: 2.7785 L12: -0.3865 REMARK 3 L13: 1.5192 L23: -0.2619 REMARK 3 S TENSOR REMARK 3 S11: 0.0253 S12: -0.5905 S13: -0.0029 REMARK 3 S21: 0.2035 S22: -0.0115 S23: 0.0617 REMARK 3 S31: 0.1314 S32: -0.1277 S33: -0.0138 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 225 A 263 REMARK 3 ORIGIN FOR THE GROUP (A): 10.066 5.161 5.097 REMARK 3 T TENSOR REMARK 3 T11: 0.0641 T22: 0.2221 REMARK 3 T33: 0.0924 T12: -0.0226 REMARK 3 T13: -0.0660 T23: 0.0939 REMARK 3 L TENSOR REMARK 3 L11: 3.3780 L22: 3.5957 REMARK 3 L33: 4.3402 L12: -0.2165 REMARK 3 L13: -0.6822 L23: 0.0023 REMARK 3 S TENSOR REMARK 3 S11: 0.1389 S12: 0.4073 S13: 0.0080 REMARK 3 S21: -0.1775 S22: -0.0284 S23: 0.2068 REMARK 3 S31: -0.0070 S32: -0.3096 S33: -0.1105 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 2 C 178 REMARK 3 ORIGIN FOR THE GROUP (A): 35.911 -0.712 13.623 REMARK 3 T TENSOR REMARK 3 T11: 0.0407 T22: 0.1353 REMARK 3 T33: 0.0920 T12: 0.0043 REMARK 3 T13: -0.0113 T23: 0.0319 REMARK 3 L TENSOR REMARK 3 L11: 2.6982 L22: 1.3800 REMARK 3 L33: 5.6183 L12: -0.2192 REMARK 3 L13: 0.2340 L23: -1.8626 REMARK 3 S TENSOR REMARK 3 S11: 0.0330 S12: 0.0725 S13: -0.0756 REMARK 3 S21: -0.1544 S22: -0.0980 S23: -0.1641 REMARK 3 S31: 0.2092 S32: 0.5869 S33: 0.0649 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8TM2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-JUL-23. REMARK 100 THE DEPOSITION ID IS D_1000276203. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-AUG-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11703 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.850 REMARK 200 RESOLUTION RANGE LOW (A) : 72.690 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 83.2 REMARK 200 DATA REDUNDANCY : 2.700 REMARK 200 R MERGE (I) : 0.09200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.2 REMARK 200 DATA REDUNDANCY IN SHELL : 2.70 REMARK 200 R MERGE FOR SHELL (I) : 0.50200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.72 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MAGNESIUM CHLORIDE, TRIS (PH 8.5), REMARK 280 PEG3350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.28550 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 72.68700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.89100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 72.68700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.28550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 34.89100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4660 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20550 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, D, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 SER A 2 REMARK 465 ASN A 3 REMARK 465 GLN A 4 REMARK 465 GLU A 5 REMARK 465 VAL A 6 REMARK 465 GLN A 7 REMARK 465 ILE A 8 REMARK 465 PRO A 9 REMARK 465 LEU A 10 REMARK 465 VAL A 264 REMARK 465 PRO C 45 REMARK 465 GLN C 46 REMARK 465 GLY C 47 REMARK 465 GLN C 48 REMARK 465 TRP C 49 REMARK 465 ALA C 50 REMARK 465 GLU C 51 REMARK 465 ASP C 52 REMARK 465 VAL C 53 REMARK 465 LEU C 54 REMARK 465 GLY C 55 REMARK 465 ASN C 56 REMARK 465 LYS C 57 REMARK 465 ARG C 179 REMARK 465 ARG C 180 REMARK 465 THR C 181 REMARK 465 VAL C 182 REMARK 465 HIS C 183 REMARK 465 HIS C 184 REMARK 465 HIS C 185 REMARK 465 HIS C 186 REMARK 465 HIS C 187 REMARK 465 HIS C 188 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 64 CG CD1 CD2 REMARK 470 LEU A 67 CG CD1 CD2 REMARK 470 ILE A 92 CG1 CG2 CD1 REMARK 470 SER A 114 OG REMARK 470 LYS A 149 CG CD CE NZ REMARK 470 GLU A 164 CG CD OE1 OE2 REMARK 470 LEU A 193 CG CD1 CD2 REMARK 470 ARG A 262 CG CD NE CZ NH1 NH2 REMARK 470 THR A 263 OG1 CG2 REMARK 470 GLU C 1 CG CD OE1 OE2 REMARK 470 GLN C 31 CG CD OE1 NE2 REMARK 470 ARG C 35 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 40 CG CD CE NZ REMARK 470 ARG C 42 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 44 CG CD CE NZ REMARK 470 ARG C 64 CG CD NE CZ NH1 NH2 REMARK 470 ASP C 65 CG OD1 OD2 REMARK 470 GLU C 100 CG CD OE1 OE2 REMARK 470 GLU C 115 CG CD OE1 OE2 REMARK 470 ARG C 134 CG CD NE CZ NH1 NH2 REMARK 470 LEU C 178 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 70 -169.89 68.76 REMARK 500 LEU A 97 -66.76 -127.17 REMARK 500 MET A 103 -71.77 -95.42 REMARK 500 SER A 114 32.93 73.04 REMARK 500 ASN A 150 43.91 -108.09 REMARK 500 ASN A 156 -7.04 71.16 REMARK 500 SER A 187 107.21 -171.60 REMARK 500 SER A 199 -157.87 63.89 REMARK 500 SER A 220 132.30 -39.35 REMARK 500 PHE C 33 -62.07 -139.86 REMARK 500 ASP C 37 -167.03 -128.91 REMARK 500 MET C 151 60.19 62.73 REMARK 500 REMARK 500 REMARK: NULL DBREF 8TM2 A 3 135 UNP P26718 NKG2D_HUMAN 84 216 DBREF 8TM2 A 136 264 UNP P26718 NKG2D_HUMAN 88 216 DBREF 8TM2 C 1 182 UNP Q29983 MICA_HUMAN 24 205 SEQADV 8TM2 GLY A 1 UNP P26718 EXPRESSION TAG SEQADV 8TM2 SER A 2 UNP P26718 EXPRESSION TAG SEQADV 8TM2 ALA C 68 UNP Q29983 GLY 91 CONFLICT SEQADV 8TM2 TRP C 69 UNP Q29983 ASN 92 CONFLICT SEQADV 8TM2 LEU C 125 UNP Q29983 LYS 148 CONFLICT SEQADV 8TM2 GLN C 152 UNP Q29983 LYS 175 CONFLICT SEQADV 8TM2 ASP C 154 UNP Q29983 LYS 177 CONFLICT SEQADV 8TM2 ARG C 158 UNP Q29983 HIS 181 CONFLICT SEQADV 8TM2 PHE C 166 UNP Q29983 GLN 189 CONFLICT SEQADV 8TM2 HIS C 183 UNP Q29983 EXPRESSION TAG SEQADV 8TM2 HIS C 184 UNP Q29983 EXPRESSION TAG SEQADV 8TM2 HIS C 185 UNP Q29983 EXPRESSION TAG SEQADV 8TM2 HIS C 186 UNP Q29983 EXPRESSION TAG SEQADV 8TM2 HIS C 187 UNP Q29983 EXPRESSION TAG SEQADV 8TM2 HIS C 188 UNP Q29983 EXPRESSION TAG SEQRES 1 A 264 GLY SER ASN GLN GLU VAL GLN ILE PRO LEU THR GLU SER SEQRES 2 A 264 TYR CYS GLY PRO CYS PRO LYS ASN TRP ILE CYS TYR LYS SEQRES 3 A 264 ASN ASN CYS TYR GLN PHE PHE ASP GLU SER LYS ASN TRP SEQRES 4 A 264 TYR GLU SER GLN ALA SER CYS MET SER GLN ASN ALA SER SEQRES 5 A 264 LEU LEU LYS VAL TYR SER LYS GLU ASP GLN ASP LEU LEU SEQRES 6 A 264 LYS LEU VAL LYS SER TYR HIS TRP MET GLY LEU VAL HIS SEQRES 7 A 264 ILE PRO THR ASN GLY SER TRP GLN TRP GLU ASP GLY SER SEQRES 8 A 264 ILE LEU SER PRO ASN LEU LEU THR ILE ILE GLU MET GLN SEQRES 9 A 264 LYS GLY ASP CYS ALA LEU TYR ALA SER SER PHE LYS GLY SEQRES 10 A 264 TYR ILE GLU ASN CYS SER THR PRO ASN THR TYR ILE CYS SEQRES 11 A 264 MET GLN ARG THR VAL GLN ILE PRO LEU THR GLU SER TYR SEQRES 12 A 264 CYS GLY PRO CYS PRO LYS ASN TRP ILE CYS TYR LYS ASN SEQRES 13 A 264 ASN CYS TYR GLN PHE PHE ASP GLU SER LYS ASN TRP TYR SEQRES 14 A 264 GLU SER GLN ALA SER CYS MET SER GLN ASN ALA SER LEU SEQRES 15 A 264 LEU LYS VAL TYR SER LYS GLU ASP GLN ASP LEU LEU LYS SEQRES 16 A 264 LEU VAL LYS SER TYR HIS TRP MET GLY LEU VAL HIS ILE SEQRES 17 A 264 PRO THR ASN GLY SER TRP GLN TRP GLU ASP GLY SER ILE SEQRES 18 A 264 LEU SER PRO ASN LEU LEU THR ILE ILE GLU MET GLN LYS SEQRES 19 A 264 GLY ASP CYS ALA LEU TYR ALA SER SER PHE LYS GLY TYR SEQRES 20 A 264 ILE GLU ASN CYS SER THR PRO ASN THR TYR ILE CYS MET SEQRES 21 A 264 GLN ARG THR VAL SEQRES 1 C 188 GLU PRO HIS SER LEU ARG TYR ASN LEU THR VAL LEU SER SEQRES 2 C 188 TRP ASP GLY SER VAL GLN SER GLY PHE LEU THR GLU VAL SEQRES 3 C 188 HIS LEU ASP GLY GLN PRO PHE LEU ARG CYS ASP ARG GLN SEQRES 4 C 188 LYS CYS ARG ALA LYS PRO GLN GLY GLN TRP ALA GLU ASP SEQRES 5 C 188 VAL LEU GLY ASN LYS THR TRP ASP ARG GLU THR ARG ASP SEQRES 6 C 188 LEU THR ALA TRP GLY LYS ASP LEU ARG MET THR LEU ALA SEQRES 7 C 188 HIS ILE LYS ASP GLN LYS GLU GLY LEU HIS SER LEU GLN SEQRES 8 C 188 GLU ILE ARG VAL CYS GLU ILE HIS GLU ASP ASN SER THR SEQRES 9 C 188 ARG SER SER GLN HIS PHE TYR TYR ASP GLY GLU LEU PHE SEQRES 10 C 188 LEU SER GLN ASN LEU GLU THR LEU GLU TRP THR MET PRO SEQRES 11 C 188 GLN SER SER ARG ALA GLN THR LEU ALA MET ASN VAL ARG SEQRES 12 C 188 ASN PHE LEU LYS GLU ASP ALA MET GLN THR ASP THR HIS SEQRES 13 C 188 TYR ARG ALA MET HIS ALA ASP CYS LEU PHE GLU LEU ARG SEQRES 14 C 188 ARG TYR LEU LYS SER GLY VAL VAL LEU ARG ARG THR VAL SEQRES 15 C 188 HIS HIS HIS HIS HIS HIS HET NAG D 1 14 HET NAG D 2 14 HET NAG B 1 14 HET NAG B 2 14 HET NAG A 301 14 HET NAG A 302 14 HET NAG A 303 14 HET NAG C 201 14 HET GOL C 202 6 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM GOL GLYCEROL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 NAG 8(C8 H15 N O6) FORMUL 9 GOL C3 H8 O3 FORMUL 10 HOH *22(H2 O) HELIX 1 AA1 ASN A 38 GLN A 49 1 12 HELIX 2 AA2 GLN A 62 VAL A 68 5 7 HELIX 3 AA3 ASN A 167 GLN A 178 1 12 HELIX 4 AA4 GLN A 191 VAL A 197 5 7 HELIX 5 AA5 TRP C 59 HIS C 79 1 21 HELIX 6 AA6 SER C 132 ASP C 149 1 18 HELIX 7 AA7 THR C 153 SER C 174 1 22 SHEET 1 AA1 2 SER A 13 CYS A 18 0 SHEET 2 AA1 2 SER A 142 CYS A 147 -1 O SER A 142 N CYS A 18 SHEET 1 AA2 5 ILE A 23 CYS A 24 0 SHEET 2 AA2 5 ASN A 28 LYS A 37 -1 O TYR A 30 N ILE A 23 SHEET 3 AA2 5 ASN A 126 ARG A 133 -1 O TYR A 128 N PHE A 33 SHEET 4 AA2 5 HIS A 72 HIS A 78 1 N TRP A 73 O THR A 127 SHEET 5 AA2 5 TRP A 85 TRP A 87 -1 O GLN A 86 N VAL A 77 SHEET 1 AA3 6 SER A 52 LEU A 53 0 SHEET 2 AA3 6 ASN A 126 ARG A 133 -1 O MET A 131 N SER A 52 SHEET 3 AA3 6 HIS A 72 HIS A 78 1 N TRP A 73 O THR A 127 SHEET 4 AA3 6 CYS A 108 ALA A 112 -1 O TYR A 111 N HIS A 72 SHEET 5 AA3 6 LYS A 116 GLU A 120 -1 O TYR A 118 N LEU A 110 SHEET 6 AA3 6 THR A 99 ILE A 101 1 N ILE A 101 O GLY A 117 SHEET 1 AA4 4 ILE A 152 TYR A 154 0 SHEET 2 AA4 4 ASN A 157 LYS A 166 -1 O TYR A 159 N ILE A 152 SHEET 3 AA4 4 ASN A 255 MET A 260 -1 O ASN A 255 N LYS A 166 SHEET 4 AA4 4 SER A 181 LEU A 182 -1 N SER A 181 O MET A 260 SHEET 1 AA5 5 SER A 213 GLN A 215 0 SHEET 2 AA5 5 TYR A 200 ILE A 208 -1 N VAL A 206 O GLN A 215 SHEET 3 AA5 5 CYS A 237 ALA A 241 -1 O TYR A 240 N HIS A 201 SHEET 4 AA5 5 LYS A 245 GLU A 249 -1 O TYR A 247 N LEU A 239 SHEET 5 AA5 5 THR A 228 GLU A 231 1 N THR A 228 O GLY A 246 SHEET 1 AA6 5 SER C 17 VAL C 18 0 SHEET 2 AA6 5 HIS C 3 TRP C 14 -1 N TRP C 14 O SER C 17 SHEET 3 AA6 5 LEU C 23 LEU C 28 -1 O HIS C 27 N ARG C 6 SHEET 4 AA6 5 GLN C 31 CYS C 36 -1 O LEU C 34 N VAL C 26 SHEET 5 AA6 5 CYS C 41 ALA C 43 -1 O ARG C 42 N ARG C 35 SHEET 1 AA7 6 SER C 17 VAL C 18 0 SHEET 2 AA7 6 HIS C 3 TRP C 14 -1 N TRP C 14 O SER C 17 SHEET 3 AA7 6 LEU C 87 ILE C 98 -1 O ARG C 94 N TYR C 7 SHEET 4 AA7 6 THR C 104 TYR C 112 -1 O HIS C 109 N ILE C 93 SHEET 5 AA7 6 GLU C 115 ASN C 121 -1 O LEU C 118 N PHE C 110 SHEET 6 AA7 6 GLU C 126 THR C 128 -1 O THR C 128 N SER C 119 SSBOND 1 CYS A 15 CYS A 24 1555 1555 2.04 SSBOND 2 CYS A 18 CYS A 29 1555 1555 2.04 SSBOND 3 CYS A 46 CYS A 130 1555 1555 2.05 SSBOND 4 CYS A 108 CYS A 122 1555 1555 2.05 SSBOND 5 CYS A 144 CYS A 153 1555 1555 2.04 SSBOND 6 CYS A 147 CYS A 158 1555 1555 2.04 SSBOND 7 CYS A 175 CYS A 259 1555 1555 2.06 SSBOND 8 CYS A 237 CYS A 251 1555 1555 2.05 SSBOND 9 CYS C 36 CYS C 41 1555 1555 2.04 SSBOND 10 CYS C 96 CYS C 164 1555 1555 2.07 LINK ND2 ASN A 50 C1 NAG A 303 1555 1555 1.45 LINK ND2 ASN A 82 C1 NAG B 1 1555 1555 1.45 LINK ND2 ASN A 121 C1 NAG A 302 1555 1555 1.45 LINK ND2 ASN A 211 C1 NAG A 301 1555 1555 1.45 LINK ND2 ASN C 8 C1 NAG D 1 1555 1555 1.44 LINK ND2 ASN C 102 C1 NAG C 201 1555 1555 1.45 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.45 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.45 CRYST1 56.571 69.782 145.374 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017677 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014330 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006879 0.00000