HEADER DE NOVO PROTEIN 28-JUL-23 8TM9 TITLE COMPUTATIONALLY DESIGNED TUNABLE C2 SYMMETRIC TANDEM REPEAT HOMODIMER, TITLE 2 D_3_633_8X BOUND TO PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: D_3_633_8X PEPTIDE BOUND; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: MC1; COMPND 7 CHAIN: D; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 3 ORGANISM_TAXID: 32630; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 MOL_ID: 2; SOURCE 7 SYNTHETIC: YES; SOURCE 8 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 9 ORGANISM_TAXID: 32630 KEYWDS HOMODIMER, DE NOVO, DESIGNED, CTRP, COMPUTATIONAL, C2 SYMMETRIC, KEYWDS 2 CIRCULAR TANDEM REPEAT PROTEIN, CYCLIC PEPTIDE, DE NOVO PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.A.KENNEDY,B.L.STODDARD,D.R.HICKS REVDAT 1 11-DEC-24 8TM9 0 JRNL AUTH M.A.KENNEDY,B.L.STODDARD,D.R.HICKS JRNL TITL COMPUTATIONALLY DESIGNED TUNABLE C2 SYMMETRIC TANDEM REPEAT JRNL TITL 2 HOMODIMER, D_3_633_8X BOUND TO PEPTIDE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.20RC1_4392: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.40 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 29347 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.212 REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.770 REMARK 3 FREE R VALUE TEST SET COUNT : 1987 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.4000 - 4.9500 1.00 2049 149 0.2030 0.2397 REMARK 3 2 4.9400 - 3.9300 1.00 2003 146 0.1817 0.2037 REMARK 3 3 3.9200 - 3.4300 1.00 1999 145 0.1894 0.2101 REMARK 3 4 3.4300 - 3.1200 1.00 1990 144 0.2215 0.2704 REMARK 3 5 3.1200 - 2.8900 1.00 1963 143 0.2213 0.2560 REMARK 3 6 2.8900 - 2.7200 0.99 1968 143 0.2248 0.2738 REMARK 3 7 2.7200 - 2.5900 0.99 1956 142 0.2401 0.3167 REMARK 3 8 2.5900 - 2.4700 0.99 1963 143 0.2270 0.2792 REMARK 3 9 2.4700 - 2.3800 0.99 1921 139 0.2246 0.2900 REMARK 3 10 2.3800 - 2.3000 0.99 1968 144 0.2260 0.2604 REMARK 3 11 2.3000 - 2.2200 0.98 1942 142 0.2183 0.2759 REMARK 3 12 2.2200 - 2.1600 0.98 1934 142 0.2223 0.3038 REMARK 3 13 2.1600 - 2.1000 0.98 1884 132 0.2413 0.2790 REMARK 3 14 2.1000 - 2.0500 0.90 1820 133 0.2684 0.3006 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.650 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 3578 REMARK 3 ANGLE : 0.477 4841 REMARK 3 CHIRALITY : 0.033 592 REMARK 3 PLANARITY : 0.004 600 REMARK 3 DIHEDRAL : 21.326 515 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 10.4471 3.8478 22.1749 REMARK 3 T TENSOR REMARK 3 T11: 0.1939 T22: 0.2002 REMARK 3 T33: 0.2977 T12: 0.0194 REMARK 3 T13: 0.0132 T23: 0.0059 REMARK 3 L TENSOR REMARK 3 L11: 1.3245 L22: 0.4627 REMARK 3 L33: 1.1892 L12: 0.2345 REMARK 3 L13: -0.4312 L23: -0.2173 REMARK 3 S TENSOR REMARK 3 S11: 0.0247 S12: 0.1106 S13: 0.1350 REMARK 3 S21: -0.0486 S22: -0.0291 S23: 0.0476 REMARK 3 S31: -0.1150 S32: 0.0192 S33: 0.0026 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8TM9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-JUL-23. REMARK 100 THE DEPOSITION ID IS D_1000276199. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-FEB-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.977 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29565 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : 0.07400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.09 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.6 REMARK 200 DATA REDUNDANCY IN SHELL : 4.80 REMARK 200 R MERGE FOR SHELL (I) : 0.42000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 1.20 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.6M AMMONIUM SULFATE, 4% 2-PROPANOL, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 27.28100 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6470 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19530 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -77.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 1 REMARK 465 GLY A 2 REMARK 465 SER A 3 REMARK 465 GLY A 4 REMARK 465 SER A 5 REMARK 465 SER A 6 REMARK 465 ARG A 232 REMARK 465 LYS A 233 REMARK 465 ARG A 234 REMARK 465 SER B 1 REMARK 465 GLY B 2 REMARK 465 SER B 3 REMARK 465 GLY B 4 REMARK 465 SER B 5 REMARK 465 SER B 6 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 11 CD OE1 OE2 REMARK 470 LYS A 14 CD CE NZ REMARK 470 LYS A 18 NZ REMARK 470 GLU A 35 CD OE1 OE2 REMARK 470 LYS A 38 NZ REMARK 470 ARG A 55 NH1 NH2 REMARK 470 LEU A 56 CD1 CD2 REMARK 470 LYS A 62 CE NZ REMARK 470 GLU A 73 CD OE1 OE2 REMARK 470 ARG A 81 CD NE CZ NH1 NH2 REMARK 470 ARG A 88 NE CZ NH1 NH2 REMARK 470 ARG A 93 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 94 CD NE CZ NH1 NH2 REMARK 470 GLU A 97 CG CD OE1 OE2 REMARK 470 GLN A 104 NE2 REMARK 470 ARG A 114 NE CZ NH1 NH2 REMARK 470 LEU A 115 CG CD1 CD2 REMARK 470 LYS A 116 CD CE NZ REMARK 470 GLU A 117 CG CD OE1 OE2 REMARK 470 GLU A 120 CG CD OE1 OE2 REMARK 470 ARG A 121 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 126 CG CD OE1 OE2 REMARK 470 ILE A 127 CD1 REMARK 470 GLN A 128 CD OE1 NE2 REMARK 470 GLU A 129 CD OE1 OE2 REMARK 470 GLU A 132 CG CD OE1 OE2 REMARK 470 ARG A 133 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 135 CG CD1 CD2 REMARK 470 ARG A 136 CD NE CZ NH1 NH2 REMARK 470 LYS A 139 CD CE NZ REMARK 470 LYS A 140 CD CE NZ REMARK 470 LYS A 143 NZ REMARK 470 GLU A 147 OE1 OE2 REMARK 470 ARG A 152 NH1 NH2 REMARK 470 LYS A 153 CD CE NZ REMARK 470 GLN A 169 CD OE1 NE2 REMARK 470 GLU A 179 CD OE1 OE2 REMARK 470 LYS A 180 CG CD CE NZ REMARK 470 THR A 182 OG1 CG2 REMARK 470 ASP A 183 CG OD1 OD2 REMARK 470 PRO A 184 CG CD REMARK 470 ILE A 186 CD1 REMARK 470 ARG A 188 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 189 CD CE NZ REMARK 470 GLU A 192 CD OE1 OE2 REMARK 470 LYS A 198 CE NZ REMARK 470 LEU A 201 CD1 CD2 REMARK 470 GLU A 202 CG CD OE1 OE2 REMARK 470 LYS A 212 CG CD CE NZ REMARK 470 GLU A 226 CD OE1 OE2 REMARK 470 LEU A 227 CD1 CD2 REMARK 470 LYS A 228 CG CD CE NZ REMARK 470 LEU B 9 CG CD1 CD2 REMARK 470 ASP B 10 CG OD1 OD2 REMARK 470 LEU B 12 CD1 CD2 REMARK 470 LYS B 14 CG CD CE NZ REMARK 470 LYS B 17 CD CE NZ REMARK 470 LYS B 18 CD CE NZ REMARK 470 GLU B 25 CD OE1 OE2 REMARK 470 GLN B 26 OE1 REMARK 470 GLU B 28 CD OE1 OE2 REMARK 470 ARG B 29 CG CD NE CZ NH1 NH2 REMARK 470 ILE B 36 CD1 REMARK 470 LYS B 38 NZ REMARK 470 LEU B 56 CD1 CD2 REMARK 470 ILE B 59 CD1 REMARK 470 LYS B 62 CE NZ REMARK 470 GLU B 67 CD OE1 OE2 REMARK 470 GLU B 70 OE2 REMARK 470 GLU B 73 CD OE1 OE2 REMARK 470 LEU B 76 CD1 CD2 REMARK 470 ARG B 77 CD NE CZ NH1 NH2 REMARK 470 LYS B 80 NZ REMARK 470 ARG B 93 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 94 NH1 REMARK 470 GLU B 97 OE2 REMARK 470 ARG B 114 NE CZ NH1 REMARK 470 GLU B 117 OE1 OE2 REMARK 470 ILE B 118 CD1 REMARK 470 GLU B 120 CD OE1 OE2 REMARK 470 ARG B 121 CD NE CZ NH1 NH2 REMARK 470 ILE B 127 CG1 CG2 CD1 REMARK 470 GLU B 129 CD OE1 OE2 REMARK 470 ARG B 136 NE CZ NH1 NH2 REMARK 470 LYS B 139 CD CE NZ REMARK 470 LYS B 140 CE NZ REMARK 470 LYS B 143 CE NZ REMARK 470 ARG B 152 CD NE CZ NH1 NH2 REMARK 470 LYS B 153 CE NZ REMARK 470 GLN B 169 CD OE1 NE2 REMARK 470 ARG B 199 CZ NH1 NH2 REMARK 470 ARG B 206 NE CZ NH1 NH2 REMARK 470 LYS B 212 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DAL D 1 C DPR D 2 N 0.124 REMARK 500 DAL D 5 C DPR D 6 N 0.197 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DPR D 2 C - N - CA ANGL. DEV. = 11.2 DEGREES REMARK 500 MLE D 7 CA - C - N ANGL. DEV. = 15.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 DPR D 2 -142.47 35.18 REMARK 500 DPR D 6 -124.06 31.65 REMARK 500 MLE D 7 -80.29 -93.87 REMARK 500 REMARK 500 REMARK: NULL DBREF 8TM9 A 1 234 PDB 8TM9 8TM9 1 234 DBREF 8TM9 B 1 234 PDB 8TM9 8TM9 1 234 DBREF 8TM9 D 1 8 PDB 8TM9 8TM9 1 8 SEQRES 1 A 234 SER GLY SER GLY SER SER PRO GLU LEU ASP GLU LEU TRP SEQRES 2 A 234 LYS ARG VAL LYS LYS LEU VAL THR GLU LEU LEU GLU GLN SEQRES 3 A 234 ALA GLU ARG ALA GLY ASP PRO GLU GLU ILE PHE LYS LEU SEQRES 4 A 234 LEU GLU VAL ALA ALA ALA LEU VAL PHE LEU ALA GLU MET SEQRES 5 A 234 PHE LEU ARG LEU ALA ALA ILE GLN GLU LYS ALA THR ASP SEQRES 6 A 234 PRO GLU ILE GLN GLU LEU ALA GLU ARG VAL LEU ARG LEU SEQRES 7 A 234 ILE LYS ARG LEU LEU GLU GLU ALA GLU ARG ALA GLY ASP SEQRES 8 A 234 PRO ARG ARG ILE ARG GLU LEU VAL GLU VAL ALA SER GLN SEQRES 9 A 234 LEU ALA PHE LEU LEU GLU LEU PHE TYR ARG LEU LYS GLU SEQRES 10 A 234 ILE GLN GLU ARG ALA THR ASP PRO GLU ILE GLN GLU LEU SEQRES 11 A 234 ALA GLU ARG VAL LEU ARG LEU ILE LYS LYS LEU LEU LYS SEQRES 12 A 234 ALA ALA GLU GLU ALA GLY ASP PRO ARG LYS ILE HIS LYS SEQRES 13 A 234 LEU VAL PHE VAL ALA ILE VAL LEU LEU PHE LEU LEU GLN SEQRES 14 A 234 THR PHE TYR ARG LEU LYS GLU ILE GLN GLU LYS ALA THR SEQRES 15 A 234 ASP PRO GLU ILE GLN ARG LYS ALA GLN GLU VAL LEU GLU SEQRES 16 A 234 LYS ILE LYS ARG LEU LEU GLU ALA ALA GLU ARG ALA GLY SEQRES 17 A 234 ASP PRO ALA LYS ILE LEU LEU TYR VAL ILE ARG ALA LEU SEQRES 18 A 234 LEU LEU ALA MET GLU LEU LYS PHE ALA TYR ARG LYS ARG SEQRES 1 B 234 SER GLY SER GLY SER SER PRO GLU LEU ASP GLU LEU TRP SEQRES 2 B 234 LYS ARG VAL LYS LYS LEU VAL THR GLU LEU LEU GLU GLN SEQRES 3 B 234 ALA GLU ARG ALA GLY ASP PRO GLU GLU ILE PHE LYS LEU SEQRES 4 B 234 LEU GLU VAL ALA ALA ALA LEU VAL PHE LEU ALA GLU MET SEQRES 5 B 234 PHE LEU ARG LEU ALA ALA ILE GLN GLU LYS ALA THR ASP SEQRES 6 B 234 PRO GLU ILE GLN GLU LEU ALA GLU ARG VAL LEU ARG LEU SEQRES 7 B 234 ILE LYS ARG LEU LEU GLU GLU ALA GLU ARG ALA GLY ASP SEQRES 8 B 234 PRO ARG ARG ILE ARG GLU LEU VAL GLU VAL ALA SER GLN SEQRES 9 B 234 LEU ALA PHE LEU LEU GLU LEU PHE TYR ARG LEU LYS GLU SEQRES 10 B 234 ILE GLN GLU ARG ALA THR ASP PRO GLU ILE GLN GLU LEU SEQRES 11 B 234 ALA GLU ARG VAL LEU ARG LEU ILE LYS LYS LEU LEU LYS SEQRES 12 B 234 ALA ALA GLU GLU ALA GLY ASP PRO ARG LYS ILE HIS LYS SEQRES 13 B 234 LEU VAL PHE VAL ALA ILE VAL LEU LEU PHE LEU LEU GLN SEQRES 14 B 234 THR PHE TYR ARG LEU LYS GLU ILE GLN GLU LYS ALA THR SEQRES 15 B 234 ASP PRO GLU ILE GLN ARG LYS ALA GLN GLU VAL LEU GLU SEQRES 16 B 234 LYS ILE LYS ARG LEU LEU GLU ALA ALA GLU ARG ALA GLY SEQRES 17 B 234 ASP PRO ALA LYS ILE LEU LEU TYR VAL ILE ARG ALA LEU SEQRES 18 B 234 LEU LEU ALA MET GLU LEU LYS PHE ALA TYR ARG LYS ARG SEQRES 1 D 8 DAL DPR MLE MEA DAL DPR MLE MEA HET DAL D 1 5 HET DPR D 2 7 HET MLE D 3 9 HET MEA D 4 12 HET DAL D 5 5 HET DPR D 6 7 HET MLE D 7 9 HET MEA D 8 12 HET POL A 301 4 HET SO4 B 301 5 HET SO4 B 302 5 HET SO4 B 303 5 HET POL B 304 4 HET POL B 305 4 HETNAM DAL D-ALANINE HETNAM DPR D-PROLINE HETNAM MLE N-METHYLLEUCINE HETNAM MEA N-METHYLPHENYLALANINE HETNAM POL N-PROPANOL HETNAM SO4 SULFATE ION HETSYN POL 1-PROPONOL FORMUL 3 DAL 2(C3 H7 N O2) FORMUL 3 DPR 2(C5 H9 N O2) FORMUL 3 MLE 2(C7 H15 N O2) FORMUL 3 MEA 2(C10 H13 N O2) FORMUL 4 POL 3(C3 H8 O) FORMUL 5 SO4 3(O4 S 2-) FORMUL 10 HOH *97(H2 O) HELIX 1 AA1 PRO A 7 ALA A 30 1 24 HELIX 2 AA2 ASP A 32 ALA A 63 1 32 HELIX 3 AA3 ASP A 65 ALA A 89 1 25 HELIX 4 AA4 ASP A 91 ALA A 122 1 32 HELIX 5 AA5 ASP A 124 ALA A 148 1 25 HELIX 6 AA6 ASP A 150 LYS A 180 1 31 HELIX 7 AA7 ASP A 183 ARG A 206 1 24 HELIX 8 AA8 ASP A 209 ALA A 230 1 22 HELIX 9 AA9 GLU B 8 ARG B 29 1 22 HELIX 10 AB1 ASP B 32 PHE B 53 1 22 HELIX 11 AB2 ARG B 55 GLN B 60 1 6 HELIX 12 AB3 ASP B 65 GLU B 87 1 23 HELIX 13 AB4 ASP B 91 ALA B 122 1 32 HELIX 14 AB5 ASP B 124 ALA B 148 1 25 HELIX 15 AB6 ASP B 150 ALA B 181 1 32 HELIX 16 AB7 ASP B 183 ALA B 207 1 25 HELIX 17 AB8 ASP B 209 ARG B 232 1 24 LINK C DAL D 1 N DPR D 2 1555 1555 1.46 LINK N DAL D 1 C MEA D 8 1555 1555 1.44 LINK C DPR D 2 N MLE D 3 1555 1555 1.45 LINK C MLE D 3 N MEA D 4 1555 1555 1.46 LINK C MEA D 4 N DAL D 5 1555 1555 1.42 LINK C DAL D 5 N DPR D 6 1555 1555 1.54 LINK C DPR D 6 N MLE D 7 1555 1555 1.42 LINK C MLE D 7 N MEA D 8 1555 1555 1.46 CISPEP 1 MLE D 3 MEA D 4 0 -0.25 CRYST1 54.717 54.562 80.478 90.00 96.11 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018276 0.000000 0.001956 0.00000 SCALE2 0.000000 0.018328 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012497 0.00000