HEADER BIOSYNTHETIC PROTEIN 01-AUG-23 8TN2 TITLE STRUCTURE OF S. HYGROSCOPICUS AMINOTRANSFERASE MPPQ COMPLEXED WITH TITLE 2 PYRIDOXAL-5'-PHOSPHATE (PLP) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PLP-DEPENDENT AMINOTRANSFERASE MPPQ; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES HYGROSCOPICUS; SOURCE 3 ORGANISM_TAXID: 1912; SOURCE 4 GENE: MPPQ; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS MANNOPEPTIMYCIN, AMINOTRANSFERASE, PLP, BIOSYNTHETIC PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR N.R.SILVAGGI,N.VUKSANOVIC REVDAT 1 22-NOV-23 8TN2 0 SPRSDE 22-NOV-23 8TN2 7UKX JRNL AUTH N.VUKSANOVIC,T.R.MELKONIAN,D.A.SERRANO,A.W.SCHWABACHER, JRNL AUTH 2 N.R.SILVAGGI JRNL TITL STRUCTURAL AND BIOCHEMICAL CHARACTERIZATION OF MPPQ, AN JRNL TITL 2 L-ENDURACIDIDINE BIOSYNTHETIC ENZYME FROM STREPTOMYCES JRNL TITL 3 HYGROSCOPICUS. JRNL REF BIOCHEMISTRY V. 62 3105 2023 JRNL REFN ISSN 0006-2960 JRNL PMID 37890134 JRNL DOI 10.1021/ACS.BIOCHEM.3C00428 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.10 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.010 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 73087 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.145 REMARK 3 R VALUE (WORKING SET) : 0.144 REMARK 3 FREE R VALUE : 0.170 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.920 REMARK 3 FREE R VALUE TEST SET COUNT : 6815 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.1000 - 3.7700 0.97 13181 665 0.1370 0.1433 REMARK 3 2 3.7700 - 2.9900 1.00 13466 705 0.1270 0.1611 REMARK 3 3 2.9900 - 2.6100 0.99 13405 757 0.1317 0.1566 REMARK 3 4 2.6100 - 2.3800 0.99 13425 679 0.1250 0.1698 REMARK 3 5 2.3800 - 2.2000 0.99 13455 675 0.1279 0.1529 REMARK 3 6 2.2000 - 2.0700 0.99 13381 619 0.1406 0.1859 REMARK 3 7 2.0700 - 1.9700 0.97 13140 715 0.1600 0.1826 REMARK 3 8 1.9700 - 1.8900 0.96 12978 659 0.1785 0.2061 REMARK 3 9 1.8900 - 1.8100 0.94 12793 666 0.1916 0.2110 REMARK 3 10 1.8100 - 1.7500 0.93 12559 675 0.2306 0.2580 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.60 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.260 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 6108 REMARK 3 ANGLE : 0.843 8332 REMARK 3 CHIRALITY : 0.050 935 REMARK 3 PLANARITY : 0.012 1108 REMARK 3 DIHEDRAL : 12.449 2245 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 15 THROUGH 69 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.2033 -1.7681 22.4282 REMARK 3 T TENSOR REMARK 3 T11: 0.0966 T22: 0.0759 REMARK 3 T33: 0.0760 T12: -0.0028 REMARK 3 T13: 0.0217 T23: 0.0005 REMARK 3 L TENSOR REMARK 3 L11: 2.2568 L22: 0.3837 REMARK 3 L33: 2.1580 L12: 0.5386 REMARK 3 L13: 2.0156 L23: 0.5249 REMARK 3 S TENSOR REMARK 3 S11: 0.0979 S12: -0.0525 S13: -0.1385 REMARK 3 S21: 0.0404 S22: -0.0284 S23: 0.0249 REMARK 3 S31: 0.1899 S32: -0.0696 S33: -0.0770 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 70 THROUGH 264 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.9149 14.7521 7.1245 REMARK 3 T TENSOR REMARK 3 T11: 0.0749 T22: 0.0978 REMARK 3 T33: 0.0779 T12: -0.0016 REMARK 3 T13: 0.0007 T23: 0.0094 REMARK 3 L TENSOR REMARK 3 L11: 0.5258 L22: 0.3918 REMARK 3 L33: 0.9947 L12: 0.0164 REMARK 3 L13: 0.0777 L23: -0.0576 REMARK 3 S TENSOR REMARK 3 S11: -0.0210 S12: 0.1214 S13: 0.0376 REMARK 3 S21: -0.0532 S22: 0.0111 S23: -0.0209 REMARK 3 S31: -0.0247 S32: 0.0693 S33: 0.0089 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 265 THROUGH 402 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.1873 2.2330 4.9512 REMARK 3 T TENSOR REMARK 3 T11: 0.0953 T22: 0.1067 REMARK 3 T33: 0.0680 T12: 0.0073 REMARK 3 T13: 0.0140 T23: -0.0034 REMARK 3 L TENSOR REMARK 3 L11: 0.7686 L22: 0.6646 REMARK 3 L33: 1.0449 L12: 0.2202 REMARK 3 L13: 0.5254 L23: 0.2928 REMARK 3 S TENSOR REMARK 3 S11: 0.0082 S12: 0.1284 S13: -0.0241 REMARK 3 S21: -0.1186 S22: 0.0065 S23: 0.0437 REMARK 3 S31: 0.0399 S32: -0.0014 S33: -0.0151 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 403 THROUGH 403 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.5661 -4.4830 -12.1883 REMARK 3 T TENSOR REMARK 3 T11: 0.3901 T22: 0.1912 REMARK 3 T33: 0.1871 T12: 0.0660 REMARK 3 T13: -0.0720 T23: -0.1701 REMARK 3 L TENSOR REMARK 3 L11: 2.0000 L22: 1.9762 REMARK 3 L33: 2.0000 L12: -4.2210 REMARK 3 L13: -7.8946 L23: 1.3637 REMARK 3 S TENSOR REMARK 3 S11: -2.3691 S12: -5.5674 S13: 3.3781 REMARK 3 S21: 2.4101 S22: 1.4330 S23: -0.4802 REMARK 3 S31: -2.1584 S32: -1.9829 S33: 0.9415 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 12 THROUGH 118 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.5156 11.5060 34.9472 REMARK 3 T TENSOR REMARK 3 T11: 0.0880 T22: 0.0703 REMARK 3 T33: 0.0618 T12: -0.0091 REMARK 3 T13: 0.0229 T23: -0.0027 REMARK 3 L TENSOR REMARK 3 L11: 0.5166 L22: 0.5198 REMARK 3 L33: 0.4519 L12: 0.0487 REMARK 3 L13: 0.2579 L23: 0.1675 REMARK 3 S TENSOR REMARK 3 S11: 0.0092 S12: -0.0490 S13: -0.0108 REMARK 3 S21: 0.0514 S22: -0.0119 S23: 0.0321 REMARK 3 S31: 0.0515 S32: -0.0207 S33: -0.0039 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 119 THROUGH 171 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.5343 39.3772 32.0575 REMARK 3 T TENSOR REMARK 3 T11: 0.1073 T22: 0.0758 REMARK 3 T33: 0.1509 T12: -0.0282 REMARK 3 T13: -0.0251 T23: -0.0010 REMARK 3 L TENSOR REMARK 3 L11: 0.4587 L22: 1.4873 REMARK 3 L33: 2.0023 L12: -0.2302 REMARK 3 L13: 0.0060 L23: 0.4455 REMARK 3 S TENSOR REMARK 3 S11: -0.0618 S12: 0.0168 S13: 0.1483 REMARK 3 S21: -0.1220 S22: -0.0101 S23: -0.0166 REMARK 3 S31: -0.1603 S32: 0.0725 S33: 0.0536 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 172 THROUGH 298 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.1296 25.3928 34.9806 REMARK 3 T TENSOR REMARK 3 T11: 0.0734 T22: 0.0828 REMARK 3 T33: 0.1117 T12: -0.0019 REMARK 3 T13: 0.0075 T23: -0.0008 REMARK 3 L TENSOR REMARK 3 L11: 0.5311 L22: 1.2651 REMARK 3 L33: 0.4516 L12: 0.0464 REMARK 3 L13: 0.1837 L23: 0.5645 REMARK 3 S TENSOR REMARK 3 S11: -0.0301 S12: -0.0543 S13: 0.1121 REMARK 3 S21: 0.0084 S22: -0.0471 S23: 0.1561 REMARK 3 S31: -0.0363 S32: -0.0513 S33: 0.0606 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 299 THROUGH 403 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.4483 25.9895 51.6757 REMARK 3 T TENSOR REMARK 3 T11: 0.1355 T22: 0.1291 REMARK 3 T33: 0.1352 T12: 0.0090 REMARK 3 T13: -0.0081 T23: -0.0424 REMARK 3 L TENSOR REMARK 3 L11: 1.8600 L22: 2.2119 REMARK 3 L33: 1.0648 L12: 1.2703 REMARK 3 L13: 0.2247 L23: 0.1787 REMARK 3 S TENSOR REMARK 3 S11: 0.0330 S12: -0.2282 S13: 0.2647 REMARK 3 S21: 0.2300 S22: -0.0754 S23: -0.0007 REMARK 3 S31: -0.1234 S32: 0.0456 S33: 0.0202 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8TN2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-AUG-23. REMARK 100 THE DEPOSITION ID IS D_1000276259. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-OCT-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97625 REMARK 200 MONOCHROMATOR : SI-111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 73140 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 41.430 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : 0.12000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.78 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 5.30 REMARK 200 R MERGE FOR SHELL (I) : 0.72900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15-25 % PEG 3350, AND 0.1-0.2 M REMARK 280 AMMONIUM CITRATE TRIHYDRATE, TRILITHIUM CITRATE, OR AMMONIUM REMARK 280 SULFATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.86500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 66.66000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 57.25000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 66.66000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.86500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 57.25000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5920 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -42.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 PRO A 3 REMARK 465 VAL A 4 REMARK 465 ALA A 5 REMARK 465 GLU A 6 REMARK 465 GLY A 7 REMARK 465 GLY A 8 REMARK 465 LEU A 9 REMARK 465 PRO A 10 REMARK 465 HIS A 11 REMARK 465 GLY A 12 REMARK 465 SER A 13 REMARK 465 VAL A 14 REMARK 465 GLY A 404 REMARK 465 SER A 405 REMARK 465 THR A 406 REMARK 465 PRO A 407 REMARK 465 ASP A 408 REMARK 465 LEU A 409 REMARK 465 GLU A 410 REMARK 465 ILE A 411 REMARK 465 GLY A 412 REMARK 465 VAL A 413 REMARK 465 ARG A 414 REMARK 465 SER A 415 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 PRO B 3 REMARK 465 VAL B 4 REMARK 465 ALA B 5 REMARK 465 GLU B 6 REMARK 465 GLY B 7 REMARK 465 GLY B 8 REMARK 465 LEU B 9 REMARK 465 PRO B 10 REMARK 465 HIS B 11 REMARK 465 ALA B 324 REMARK 465 MET B 325 REMARK 465 LEU B 326 REMARK 465 ASP B 327 REMARK 465 ASP B 328 REMARK 465 GLY B 329 REMARK 465 GLY B 404 REMARK 465 SER B 405 REMARK 465 THR B 406 REMARK 465 PRO B 407 REMARK 465 ASP B 408 REMARK 465 LEU B 409 REMARK 465 GLU B 410 REMARK 465 ILE B 411 REMARK 465 GLY B 412 REMARK 465 VAL B 413 REMARK 465 ARG B 414 REMARK 465 SER B 415 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH21 ARG B 270 O HOH B 503 1.53 REMARK 500 HH12 ARG A 344 O HOH A 502 1.56 REMARK 500 O HOH B 778 O HOH B 885 2.18 REMARK 500 O HOH A 667 O HOH A 771 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 776 O HOH B 788 2554 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 106 35.17 -93.29 REMARK 500 ASP A 153 -159.67 -131.04 REMARK 500 ASN A 284 81.27 -153.45 REMARK 500 ASP A 328 64.63 33.70 REMARK 500 SER B 18 47.26 -88.47 REMARK 500 SER B 106 32.60 -94.50 REMARK 500 ASP B 153 -157.31 -122.79 REMARK 500 ASP B 216 52.64 -119.72 REMARK 500 ASN B 284 82.20 -153.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG B 148 0.13 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 941 DISTANCE = 6.68 ANGSTROMS REMARK 525 HOH B 904 DISTANCE = 5.88 ANGSTROMS REMARK 525 HOH B 905 DISTANCE = 6.03 ANGSTROMS DBREF 8TN2 A 1 415 UNP Q643B9 Q643B9_STRHY 1 415 DBREF 8TN2 B 1 415 UNP Q643B9 Q643B9_STRHY 1 415 SEQRES 1 A 415 MET THR PRO VAL ALA GLU GLY GLY LEU PRO HIS GLY SER SEQRES 2 A 415 VAL PRO SER LEU SER HIS THR ARG GLN TRP ARG PRO GLY SEQRES 3 A 415 VAL VAL GLN GLU VAL ALA PRO ALA GLY VAL LEU ASP LEU SEQRES 4 A 415 GLY PRO GLY TYR ILE GLU PRO ALA LEU LEU PRO VAL ARG SEQRES 5 A 415 LEU LEU ARG GLY ALA TYR GLU GLN ALA LEU ALA GLU TYR SEQRES 6 A 415 GLY ALA ALA ALA LEU GLY TYR GLY HIS ASP PRO GLY ALA SEQRES 7 A 415 GLN PRO LEU ARG ASP ARG LEU ALA ALA ARG ALA ALA ALA SEQRES 8 A 415 ALA ASP GLY LEU PRO CYS ASP PRO ASP GLN VAL LEU LEU SEQRES 9 A 415 THR SER GLY THR SER GLN ALA LEU TYR LEU LEU ALA THR SEQRES 10 A 415 SER LEU ALA ALA PRO GLY ASP THR VAL LEU THR GLU GLU SEQRES 11 A 415 LEU CYS TYR ASP LEU GLY GLN ARG ILE PHE ARG ASP CYS SEQRES 12 A 415 SER LEU ARG LEU ARG GLN VAL ALA MET ASP GLY SER GLY SEQRES 13 A 415 MET LEU PRO ASP ALA LEU ASP ARG ALA LEU THR GLU GLY SEQRES 14 A 415 ALA ARG ALA GLY ALA LYS THR ALA PHE VAL TYR LEU THR SEQRES 15 A 415 PRO THR HIS HIS ASN PRO THR GLY HIS THR MET PRO LEU SEQRES 16 A 415 ALA ARG ARG ARG LEU LEU LEU GLU VAL ALA ALA ARG HIS SEQRES 17 A 415 ASP VAL LEU ILE VAL GLU ASP ASP ALA TYR THR GLU LEU SEQRES 18 A 415 SER LEU ILE PRO ASP ARG THR PRO PRO PRO SER LEU ALA SEQRES 19 A 415 ALA LEU ALA GLY TYR ARG ARG VAL VAL ARG LEU CYS SER SEQRES 20 A 415 PHE SER LLP THR LEU GLY PRO GLY LEU ARG LEU GLY TRP SEQRES 21 A 415 LEU LEU ALA ASP ARG GLU LEU ALA GLY ARG LEU ALA THR SEQRES 22 A 415 HIS GLY LEU PHE VAL SER GLY GLY SER LEU ASN HIS THR SEQRES 23 A 415 THR SER LEU ALA VAL SER THR LEU LEU ALA SER GLY ALA SEQRES 24 A 415 TYR ASP ARG HIS LEU ASP ALA PHE ARG ALA GLN LEU ARG SEQRES 25 A 415 ALA ARG ARG ASP ALA LEU VAL GLY ALA LEU ARG ALA MET SEQRES 26 A 415 LEU ASP ASP GLY VAL GLU LEU ARG THR PRO GLU GLY GLY SEQRES 27 A 415 PHE PHE LEU TRP LEU ARG ALA GLY ASP GLY ALA ASP GLU SEQRES 28 A 415 ARG GLU LEU LEU ASP GLY ALA ALA ARG ALA GLY VAL ARG SEQRES 29 A 415 ILE ALA ALA GLY SER ARG PHE GLY THR THR GLN GLY ALA SEQRES 30 A 415 GLY LEU ARG LEU ALA PHE SER PHE ASN PRO PRO ALA LEU SEQRES 31 A 415 LEU GLU GLN ALA ALA LYS ARG LEU THR THR ALA TRP SER SEQRES 32 A 415 GLY SER THR PRO ASP LEU GLU ILE GLY VAL ARG SER SEQRES 1 B 415 MET THR PRO VAL ALA GLU GLY GLY LEU PRO HIS GLY SER SEQRES 2 B 415 VAL PRO SER LEU SER HIS THR ARG GLN TRP ARG PRO GLY SEQRES 3 B 415 VAL VAL GLN GLU VAL ALA PRO ALA GLY VAL LEU ASP LEU SEQRES 4 B 415 GLY PRO GLY TYR ILE GLU PRO ALA LEU LEU PRO VAL ARG SEQRES 5 B 415 LEU LEU ARG GLY ALA TYR GLU GLN ALA LEU ALA GLU TYR SEQRES 6 B 415 GLY ALA ALA ALA LEU GLY TYR GLY HIS ASP PRO GLY ALA SEQRES 7 B 415 GLN PRO LEU ARG ASP ARG LEU ALA ALA ARG ALA ALA ALA SEQRES 8 B 415 ALA ASP GLY LEU PRO CYS ASP PRO ASP GLN VAL LEU LEU SEQRES 9 B 415 THR SER GLY THR SER GLN ALA LEU TYR LEU LEU ALA THR SEQRES 10 B 415 SER LEU ALA ALA PRO GLY ASP THR VAL LEU THR GLU GLU SEQRES 11 B 415 LEU CYS TYR ASP LEU GLY GLN ARG ILE PHE ARG ASP CYS SEQRES 12 B 415 SER LEU ARG LEU ARG GLN VAL ALA MET ASP GLY SER GLY SEQRES 13 B 415 MET LEU PRO ASP ALA LEU ASP ARG ALA LEU THR GLU GLY SEQRES 14 B 415 ALA ARG ALA GLY ALA LYS THR ALA PHE VAL TYR LEU THR SEQRES 15 B 415 PRO THR HIS HIS ASN PRO THR GLY HIS THR MET PRO LEU SEQRES 16 B 415 ALA ARG ARG ARG LEU LEU LEU GLU VAL ALA ALA ARG HIS SEQRES 17 B 415 ASP VAL LEU ILE VAL GLU ASP ASP ALA TYR THR GLU LEU SEQRES 18 B 415 SER LEU ILE PRO ASP ARG THR PRO PRO PRO SER LEU ALA SEQRES 19 B 415 ALA LEU ALA GLY TYR ARG ARG VAL VAL ARG LEU CYS SER SEQRES 20 B 415 PHE SER LLP THR LEU GLY PRO GLY LEU ARG LEU GLY TRP SEQRES 21 B 415 LEU LEU ALA ASP ARG GLU LEU ALA GLY ARG LEU ALA THR SEQRES 22 B 415 HIS GLY LEU PHE VAL SER GLY GLY SER LEU ASN HIS THR SEQRES 23 B 415 THR SER LEU ALA VAL SER THR LEU LEU ALA SER GLY ALA SEQRES 24 B 415 TYR ASP ARG HIS LEU ASP ALA PHE ARG ALA GLN LEU ARG SEQRES 25 B 415 ALA ARG ARG ASP ALA LEU VAL GLY ALA LEU ARG ALA MET SEQRES 26 B 415 LEU ASP ASP GLY VAL GLU LEU ARG THR PRO GLU GLY GLY SEQRES 27 B 415 PHE PHE LEU TRP LEU ARG ALA GLY ASP GLY ALA ASP GLU SEQRES 28 B 415 ARG GLU LEU LEU ASP GLY ALA ALA ARG ALA GLY VAL ARG SEQRES 29 B 415 ILE ALA ALA GLY SER ARG PHE GLY THR THR GLN GLY ALA SEQRES 30 B 415 GLY LEU ARG LEU ALA PHE SER PHE ASN PRO PRO ALA LEU SEQRES 31 B 415 LEU GLU GLN ALA ALA LYS ARG LEU THR THR ALA TRP SER SEQRES 32 B 415 GLY SER THR PRO ASP LEU GLU ILE GLY VAL ARG SER MODRES 8TN2 LLP A 250 LYS MODIFIED RESIDUE MODRES 8TN2 LLP B 250 LYS MODIFIED RESIDUE HET LLP A 250 41 HET LLP B 250 41 HETNAM LLP (2S)-2-AMINO-6-[[3-HYDROXY-2-METHYL-5- HETNAM 2 LLP (PHOSPHONOOXYMETHYL)PYRIDIN-4- HETNAM 3 LLP YL]METHYLIDENEAMINO]HEXANOIC ACID HETSYN LLP N'-PYRIDOXYL-LYSINE-5'-MONOPHOSPHATE FORMUL 1 LLP 2(C14 H22 N3 O7 P) FORMUL 3 HOH *846(H2 O) HELIX 1 AA1 GLU A 45 LEU A 49 5 5 HELIX 2 AA2 PRO A 50 GLY A 66 1 17 HELIX 3 AA3 ALA A 67 LEU A 70 5 4 HELIX 4 AA4 ALA A 78 GLY A 94 1 17 HELIX 5 AA5 ASP A 98 ASP A 100 5 3 HELIX 6 AA6 GLY A 107 LEU A 119 1 13 HELIX 7 AA7 TYR A 133 CYS A 143 1 11 HELIX 8 AA8 LEU A 158 ALA A 172 1 15 HELIX 9 AA9 PRO A 194 ASP A 209 1 16 HELIX 10 AB1 SER A 232 ALA A 237 1 6 HELIX 11 AB2 GLY A 253 ARG A 257 5 5 HELIX 12 AB3 ASP A 264 THR A 273 1 10 HELIX 13 AB4 HIS A 274 GLY A 281 1 8 HELIX 14 AB5 ASN A 284 GLY A 298 1 15 HELIX 15 AB6 GLY A 298 ARG A 323 1 26 HELIX 16 AB7 ALA A 324 LEU A 326 5 3 HELIX 17 AB8 ASP A 350 GLY A 362 1 13 HELIX 18 AB9 SER A 369 PHE A 371 5 3 HELIX 19 AC1 PRO A 387 SER A 403 1 17 HELIX 20 AC2 GLU B 45 LEU B 49 5 5 HELIX 21 AC3 PRO B 50 GLY B 66 1 17 HELIX 22 AC4 ALA B 67 LEU B 70 5 4 HELIX 23 AC5 ALA B 78 GLY B 94 1 17 HELIX 24 AC6 ASP B 98 ASP B 100 5 3 HELIX 25 AC7 GLY B 107 LEU B 119 1 13 HELIX 26 AC8 TYR B 133 CYS B 143 1 11 HELIX 27 AC9 LEU B 158 GLY B 173 1 16 HELIX 28 AD1 PRO B 194 ASP B 209 1 16 HELIX 29 AD2 SER B 232 ALA B 237 1 6 HELIX 30 AD3 GLY B 253 ARG B 257 5 5 HELIX 31 AD4 ASP B 264 THR B 273 1 10 HELIX 32 AD5 HIS B 274 GLY B 281 1 8 HELIX 33 AD6 ASN B 284 GLY B 298 1 15 HELIX 34 AD7 GLY B 298 ARG B 323 1 26 HELIX 35 AD8 ASP B 350 GLY B 362 1 13 HELIX 36 AD9 SER B 369 PHE B 371 5 3 HELIX 37 AE1 PRO B 387 SER B 403 1 17 SHEET 1 AA1 2 LEU A 37 ASP A 38 0 SHEET 2 AA1 2 VAL A 363 ARG A 364 1 O ARG A 364 N LEU A 37 SHEET 1 AA2 7 VAL A 102 THR A 105 0 SHEET 2 AA2 7 GLY A 259 LEU A 262 -1 O GLY A 259 N THR A 105 SHEET 3 AA2 7 VAL A 242 SER A 247 -1 N ARG A 244 O LEU A 262 SHEET 4 AA2 7 LEU A 211 ASP A 215 1 N GLU A 214 O LEU A 245 SHEET 5 AA2 7 THR A 176 LEU A 181 1 N VAL A 179 O VAL A 213 SHEET 6 AA2 7 THR A 125 GLU A 129 1 N LEU A 127 O TYR A 180 SHEET 7 AA2 7 ARG A 146 VAL A 150 1 O ARG A 146 N VAL A 126 SHEET 1 AA3 2 MET A 152 ASP A 153 0 SHEET 2 AA3 2 GLY A 156 MET A 157 -1 O GLY A 156 N ASP A 153 SHEET 1 AA4 4 GLU A 331 LEU A 332 0 SHEET 2 AA4 4 PHE A 340 ARG A 344 -1 O ARG A 344 N GLU A 331 SHEET 3 AA4 4 GLY A 378 ALA A 382 -1 O LEU A 381 N LEU A 341 SHEET 4 AA4 4 ALA A 366 ALA A 367 -1 N ALA A 366 O ARG A 380 SHEET 1 AA5 2 LEU B 37 ASP B 38 0 SHEET 2 AA5 2 VAL B 363 ARG B 364 1 O ARG B 364 N LEU B 37 SHEET 1 AA6 7 VAL B 102 THR B 105 0 SHEET 2 AA6 7 GLY B 259 LEU B 262 -1 O LEU B 261 N LEU B 103 SHEET 3 AA6 7 VAL B 242 SER B 247 -1 N CYS B 246 O TRP B 260 SHEET 4 AA6 7 LEU B 211 ASP B 215 1 N GLU B 214 O LEU B 245 SHEET 5 AA6 7 THR B 176 LEU B 181 1 N VAL B 179 O VAL B 213 SHEET 6 AA6 7 THR B 125 GLU B 129 1 N LEU B 127 O TYR B 180 SHEET 7 AA6 7 ARG B 146 VAL B 150 1 O ARG B 146 N VAL B 126 SHEET 1 AA7 2 MET B 152 ASP B 153 0 SHEET 2 AA7 2 GLY B 156 MET B 157 -1 O GLY B 156 N ASP B 153 SHEET 1 AA8 4 GLU B 331 LEU B 332 0 SHEET 2 AA8 4 PHE B 340 ARG B 344 -1 O ARG B 344 N GLU B 331 SHEET 3 AA8 4 GLY B 378 ALA B 382 -1 O LEU B 381 N LEU B 341 SHEET 4 AA8 4 ALA B 366 ALA B 367 -1 N ALA B 366 O ARG B 380 LINK C SER A 249 N LLP A 250 1555 1555 1.33 LINK C LLP A 250 N THR A 251 1555 1555 1.33 LINK C SER B 249 N LLP B 250 1555 1555 1.33 LINK C LLP B 250 N THR B 251 1555 1555 1.33 CISPEP 1 ASN A 187 PRO A 188 0 15.74 CISPEP 2 ASN B 187 PRO B 188 0 13.14 CRYST1 47.730 114.500 133.320 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020951 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008734 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007501 0.00000