data_8TOZ # _entry.id 8TOZ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.395 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8TOZ pdb_00008toz 10.2210/pdb8toz/pdb WWPDB D_1000276325 ? ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2024-08-07 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8TOZ _pdbx_database_status.recvd_initial_deposition_date 2023-08-04 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_contact_author.id 2 _pdbx_contact_author.email joseph_wedekind@urmc.rochester.edu _pdbx_contact_author.name_first Joseph _pdbx_contact_author.name_last Wedekind _pdbx_contact_author.name_mi E. _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-4269-4229 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Srivastava, Y.' 1 0000-0001-9091-9851 'Jenkins, J.L.' 2 0000-0003-2548-3275 'Wedekind, J.E.' 3 0000-0002-4269-4229 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'New insights into Class III PreQ1 metabolite binding' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Srivastava, Y.' 1 0000-0001-9091-9851 primary 'Jermaine, J.L.' 2 0000-0003-2548-3275 primary 'Wedekind, J.E.' 3 0000-0002-4269-4229 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'Class-III preQ1 riboswitch' 32654.270 1 ? 'U8C, A85G' ? ? 2 non-polymer syn 7-DEAZA-7-AMINOMETHYL-GUANINE 179.179 1 ? ? ? ? 3 water nat water 18.015 5 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(GTP)AGCAACCUAGGAUUUUAGGCUCCCCGGCGUGUCUCGAACCAUGCCGGGCCAAACCCAUAGGGCUGGCGGUCCCUG UGCGGUCAGAAUUCAUCCGCCGGAG ; _entity_poly.pdbx_seq_one_letter_code_can ;GAGCAACCUAGGAUUUUAGGCUCCCCGGCGUGUCUCGAACCAUGCCGGGCCAAACCCAUAGGGCUGGCGGUCCCUGUGCG GUCAGAAUUCAUCCGCCGGAG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 7-DEAZA-7-AMINOMETHYL-GUANINE PRF 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GTP n 1 2 A n 1 3 G n 1 4 C n 1 5 A n 1 6 A n 1 7 C n 1 8 C n 1 9 U n 1 10 A n 1 11 G n 1 12 G n 1 13 A n 1 14 U n 1 15 U n 1 16 U n 1 17 U n 1 18 A n 1 19 G n 1 20 G n 1 21 C n 1 22 U n 1 23 C n 1 24 C n 1 25 C n 1 26 C n 1 27 G n 1 28 G n 1 29 C n 1 30 G n 1 31 U n 1 32 G n 1 33 U n 1 34 C n 1 35 U n 1 36 C n 1 37 G n 1 38 A n 1 39 A n 1 40 C n 1 41 C n 1 42 A n 1 43 U n 1 44 G n 1 45 C n 1 46 C n 1 47 G n 1 48 G n 1 49 G n 1 50 C n 1 51 C n 1 52 A n 1 53 A n 1 54 A n 1 55 C n 1 56 C n 1 57 C n 1 58 A n 1 59 U n 1 60 A n 1 61 G n 1 62 G n 1 63 G n 1 64 C n 1 65 U n 1 66 G n 1 67 G n 1 68 C n 1 69 G n 1 70 G n 1 71 U n 1 72 C n 1 73 C n 1 74 C n 1 75 U n 1 76 G n 1 77 U n 1 78 G n 1 79 C n 1 80 G n 1 81 G n 1 82 U n 1 83 C n 1 84 A n 1 85 G n 1 86 A n 1 87 A n 1 88 U n 1 89 U n 1 90 C n 1 91 A n 1 92 U n 1 93 C n 1 94 C n 1 95 G n 1 96 C n 1 97 C n 1 98 G n 1 99 G n 1 100 A n 1 101 G n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 101 _pdbx_entity_src_syn.organism_scientific 'Faecalibacterium prausnitzii' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 853 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GTP non-polymer n "GUANOSINE-5'-TRIPHOSPHATE" ? 'C10 H16 N5 O14 P3' 523.180 HOH non-polymer . WATER ? 'H2 O' 18.015 PRF non-polymer . 7-DEAZA-7-AMINOMETHYL-GUANINE ? 'C7 H9 N5 O' 179.179 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GTP 1 1 1 GTP GTP A . n A 1 2 A 2 2 2 A A A . n A 1 3 G 3 3 3 G G A . n A 1 4 C 4 4 4 C C A . n A 1 5 A 5 5 5 A A A . n A 1 6 A 6 6 6 A A A . n A 1 7 C 7 7 7 C C A . n A 1 8 C 8 8 8 C C A . n A 1 9 U 9 9 9 U U A . n A 1 10 A 10 10 10 A A A . n A 1 11 G 11 11 11 G G A . n A 1 12 G 12 12 12 G G A . n A 1 13 A 13 13 13 A A A . n A 1 14 U 14 14 14 U U A . n A 1 15 U 15 15 15 U U A . n A 1 16 U 16 16 16 U U A . n A 1 17 U 17 17 17 U U A . n A 1 18 A 18 18 18 A A A . n A 1 19 G 19 19 19 G G A . n A 1 20 G 20 20 20 G G A . n A 1 21 C 21 21 21 C C A . n A 1 22 U 22 22 22 U U A . n A 1 23 C 23 23 23 C C A . n A 1 24 C 24 24 24 C C A . n A 1 25 C 25 25 25 C C A . n A 1 26 C 26 26 26 C C A . n A 1 27 G 27 27 27 G G A . n A 1 28 G 28 28 28 G G A . n A 1 29 C 29 29 29 C C A . n A 1 30 G 30 30 30 G G A . n A 1 31 U 31 31 31 U U A . n A 1 32 G 32 32 32 G G A . n A 1 33 U 33 33 33 U U A . n A 1 34 C 34 34 ? ? ? A . n A 1 35 U 35 35 ? ? ? A . n A 1 36 C 36 36 ? ? ? A . n A 1 37 G 37 37 ? ? ? A . n A 1 38 A 38 38 ? ? ? A . n A 1 39 A 39 39 39 A A A . n A 1 40 C 40 40 40 C C A . n A 1 41 C 41 41 41 C C A . n A 1 42 A 42 42 42 A A A . n A 1 43 U 43 43 43 U U A . n A 1 44 G 44 44 44 G G A . n A 1 45 C 45 45 45 C C A . n A 1 46 C 46 46 46 C C A . n A 1 47 G 47 47 47 G G A . n A 1 48 G 48 48 48 G G A . n A 1 49 G 49 49 49 G G A . n A 1 50 C 50 50 50 C C A . n A 1 51 C 51 51 51 C C A . n A 1 52 A 52 52 52 A A A . n A 1 53 A 53 53 53 A A A . n A 1 54 A 54 54 54 A A A . n A 1 55 C 55 55 55 C C A . n A 1 56 C 56 56 56 C C A . n A 1 57 C 57 57 57 C C A . n A 1 58 A 58 58 58 A A A . n A 1 59 U 59 59 59 U U A . n A 1 60 A 60 60 60 A A A . n A 1 61 G 61 61 61 G G A . n A 1 62 G 62 62 62 G G A . n A 1 63 G 63 63 63 G G A . n A 1 64 C 64 64 64 C C A . n A 1 65 U 65 65 65 U U A . n A 1 66 G 66 66 66 G G A . n A 1 67 G 67 67 67 G G A . n A 1 68 C 68 68 68 C C A . n A 1 69 G 69 69 69 G G A . n A 1 70 G 70 70 70 G G A . n A 1 71 U 71 71 71 U U A . n A 1 72 C 72 72 72 C C A . n A 1 73 C 73 73 73 C C A . n A 1 74 C 74 74 74 C C A . n A 1 75 U 75 75 75 U U A . n A 1 76 G 76 76 76 G G A . n A 1 77 U 77 77 77 U U A . n A 1 78 G 78 78 78 G G A . n A 1 79 C 79 79 79 C C A . n A 1 80 G 80 80 80 G G A . n A 1 81 G 81 81 81 G G A . n A 1 82 U 82 82 82 U U A . n A 1 83 C 83 83 83 C C A . n A 1 84 A 84 84 84 A A A . n A 1 85 G 85 85 85 G G A . n A 1 86 A 86 86 86 A A A . n A 1 87 A 87 87 87 A A A . n A 1 88 U 88 88 88 U U A . n A 1 89 U 89 89 89 U U A . n A 1 90 C 90 90 90 C C A . n A 1 91 A 91 91 91 A A A . n A 1 92 U 92 92 92 U U A . n A 1 93 C 93 93 93 C C A . n A 1 94 C 94 94 94 C C A . n A 1 95 G 95 95 95 G G A . n A 1 96 C 96 96 96 C C A . n A 1 97 C 97 97 97 C C A . n A 1 98 G 98 98 98 G G A . n A 1 99 G 99 99 99 G G A . n A 1 100 A 100 100 100 A A A . n A 1 101 G 101 101 101 G G A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PRF 1 201 201 PRF PRF A . C 3 HOH 1 301 1 HOH HOH A . C 3 HOH 2 302 3 HOH HOH A . C 3 HOH 3 303 4 HOH HOH A . C 3 HOH 4 304 5 HOH HOH A . C 3 HOH 5 305 2 HOH HOH A . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A A 39 ? P ? A A 39 P 2 1 Y 1 A A 39 ? OP1 ? A A 39 OP1 3 1 Y 1 A A 39 ? OP2 ? A A 39 OP2 # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? '(1.20.1_4487: ???)' 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? Aimless ? ? ? 0.7.4 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? . 4 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 120.00 _cell.angle_gamma_esd ? _cell.entry_id 8TOZ _cell.details ? _cell.formula_units_Z ? _cell.length_a 84.082 _cell.length_a_esd ? _cell.length_b 84.082 _cell.length_b_esd ? _cell.length_c 280.826 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 12 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8TOZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8TOZ _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 4.37 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 71.83 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '65% Tacsimate pH 7, 50mM Na-CacodylatepH 7, 1mM Spermine HCl, 0.006M Hexammine Cobalt (III)Chloride, 5mM Mg Acetate' _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 293.15 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2020-09-18 _diffrn_detector.pdbx_frequency ? _diffrn_detector.id ? _diffrn_detector.number_of_axes ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97946 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SSRL BEAMLINE BL12-1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.97946 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL12-1 _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 8TOZ _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 3.0 _reflns.d_resolution_low 38.35 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 21799 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.9 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 8.5 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 6.5 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all 0.090 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.976 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 3.0 _reflns_shell.d_res_low 3.18 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 1.5 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 1953 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 8.7 _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all 0.879 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.961 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? _reflns_shell.percent_possible_all 99.8 _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 8TOZ _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 3.00 _refine.ls_d_res_low 38.35 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 21797 _refine.ls_number_reflns_R_free 2163 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 98.07 _refine.ls_percent_reflns_R_free 9.92 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2041 _refine.ls_R_factor_R_free 0.2221 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2021 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.91 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'FOURIER SYNTHESIS' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.10 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 28.20 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.31 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 3.00 _refine_hist.d_res_low 38.35 _refine_hist.number_atoms_solvent 5 _refine_hist.number_atoms_total 2070 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 2052 _refine_hist.pdbx_number_atoms_ligand 13 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.005 ? 2303 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 0.694 ? 3585 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 13.506 ? 1158 ? f_dihedral_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.030 ? 478 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.006 ? 98 ? f_plane_restr ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free _refine_ls_shell.R_factor_R_free 'X-RAY DIFFRACTION' 3.00 3.07 . . 132 1268 96.00 . . . . 0.3467 . . . . . . . . . . . 0.3909 'X-RAY DIFFRACTION' 3.07 3.15 . . 132 1290 96.00 . . . . 0.3426 . . . . . . . . . . . 0.3033 'X-RAY DIFFRACTION' 3.15 3.23 . . 148 1316 96.00 . . . . 0.2983 . . . . . . . . . . . 0.3367 'X-RAY DIFFRACTION' 3.23 3.33 . . 140 1270 96.00 . . . . 0.2684 . . . . . . . . . . . 0.2697 'X-RAY DIFFRACTION' 3.33 3.43 . . 144 1271 97.00 . . . . 0.2624 . . . . . . . . . . . 0.2619 'X-RAY DIFFRACTION' 3.43 3.56 . . 137 1304 96.00 . . . . 0.2532 . . . . . . . . . . . 0.2690 'X-RAY DIFFRACTION' 3.56 3.70 . . 149 1290 97.00 . . . . 0.2209 . . . . . . . . . . . 0.2401 'X-RAY DIFFRACTION' 3.70 3.87 . . 146 1307 98.00 . . . . 0.1998 . . . . . . . . . . . 0.2367 'X-RAY DIFFRACTION' 3.87 4.07 . . 138 1330 99.00 . . . . 0.1842 . . . . . . . . . . . 0.2107 'X-RAY DIFFRACTION' 4.07 4.33 . . 143 1319 100.00 . . . . 0.1690 . . . . . . . . . . . 0.1738 'X-RAY DIFFRACTION' 4.33 4.66 . . 151 1355 100.00 . . . . 0.1630 . . . . . . . . . . . 0.2087 'X-RAY DIFFRACTION' 4.66 5.13 . . 148 1313 100.00 . . . . 0.1787 . . . . . . . . . . . 0.2057 'X-RAY DIFFRACTION' 5.13 5.87 . . 154 1340 100.00 . . . . 0.1744 . . . . . . . . . . . 0.1875 'X-RAY DIFFRACTION' 5.87 7.38 . . 145 1333 100.00 . . . . 0.1728 . . . . . . . . . . . 0.2077 'X-RAY DIFFRACTION' 7.38 38.35 . . 156 1328 99.00 . . . . 0.1939 . . . . . . . . . . . 0.2137 # _struct.entry_id 8TOZ _struct.title 'Class III PreQ1 riboswitch double mutant U8C/A85G' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8TOZ _struct_keywords.text ;PREQ1, QUEUOSINE, THREE-WAY HELICAL JUNCTION, APTAMER, METABOLITE, TRANSLATIONAL REGULATION, HL(OUT)-TYPE PSEUDOKNOT, RIBOSWITCH, RNA ; _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 8TOZ _struct_ref.pdbx_db_accession 8TOZ _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 8TOZ _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 101 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 8TOZ _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 101 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 101 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A GTP 1 "O3'" ? ? ? 1_555 A A 2 P ? ? A GTP 1 A A 2 1_555 ? ? ? ? ? ? ? 1.596 ? ? hydrog1 hydrog ? ? A GTP 1 N1 ? ? ? 1_555 A C 23 N3 ? ? A GTP 1 A C 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A GTP 1 N2 ? ? ? 1_555 A C 23 O2 ? ? A GTP 1 A C 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A GTP 1 O6 ? ? ? 1_555 A C 23 N4 ? ? A GTP 1 A C 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A A 2 N1 ? ? ? 1_555 A U 22 N3 ? ? A A 2 A U 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A A 2 N6 ? ? ? 1_555 A U 22 O4 ? ? A A 2 A U 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 3 N1 ? ? ? 1_555 A C 21 N3 ? ? A G 3 A C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 3 N2 ? ? ? 1_555 A C 21 O2 ? ? A G 3 A C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 3 O6 ? ? ? 1_555 A C 21 N4 ? ? A G 3 A C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A C 4 N3 ? ? ? 1_555 A G 20 N1 ? ? A C 4 A G 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A C 4 N4 ? ? ? 1_555 A G 20 O6 ? ? A C 4 A G 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A C 4 O2 ? ? ? 1_555 A G 20 N2 ? ? A C 4 A G 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A A 5 N1 ? ? ? 1_555 A G 19 N1 ? ? A A 5 A G 19 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog13 hydrog ? ? A A 5 N6 ? ? ? 1_555 A G 19 O6 ? ? A A 5 A G 19 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog14 hydrog ? ? A A 6 N1 ? ? ? 1_555 A A 18 N6 ? ? A A 6 A A 18 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? ? hydrog15 hydrog ? ? A C 8 N4 ? ? ? 1_555 A G 85 O6 ? ? A C 8 A G 85 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog16 hydrog ? ? A U 9 N3 ? ? ? 1_555 A A 86 N7 ? ? A U 9 A A 86 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog17 hydrog ? ? A U 9 O4 ? ? ? 1_555 A A 86 N6 ? ? A U 9 A A 86 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog18 hydrog ? ? A A 10 N1 ? ? ? 1_555 A A 87 N6 ? ? A A 10 A A 87 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog19 hydrog ? ? A A 10 N6 ? ? ? 1_555 A A 87 N7 ? ? A A 10 A A 87 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog20 hydrog ? ? A G 11 N1 ? ? ? 1_555 A C 90 N3 ? ? A G 11 A C 90 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A G 11 N2 ? ? ? 1_555 A C 90 O2 ? ? A G 11 A C 90 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A G 11 O6 ? ? ? 1_555 A C 90 N4 ? ? A G 11 A C 90 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A G 12 N1 ? ? ? 1_555 A U 89 O2 ? ? A G 12 A U 89 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog24 hydrog ? ? A G 12 O6 ? ? ? 1_555 A U 89 N3 ? ? A G 12 A U 89 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog25 hydrog ? ? A A 13 N1 ? ? ? 1_555 A U 88 N3 ? ? A A 13 A U 88 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A A 13 N6 ? ? ? 1_555 A U 88 O4 ? ? A A 13 A U 88 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A U 14 N3 ? ? ? 1_555 A A 87 N1 ? ? A U 14 A A 87 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A U 14 O4 ? ? ? 1_555 A A 87 N6 ? ? A U 14 A A 87 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A U 15 N3 ? ? ? 1_555 A A 86 N1 ? ? A U 15 A A 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A U 15 O4 ? ? ? 1_555 A A 86 N6 ? ? A U 15 A A 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A U 16 N3 ? ? ? 1_555 A G 85 O6 ? ? A U 16 A G 85 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog32 hydrog ? ? A U 16 O2 ? ? ? 1_555 A G 85 N1 ? ? A U 16 A G 85 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog33 hydrog ? ? A C 24 N3 ? ? ? 1_555 A G 49 N1 ? ? A C 24 A G 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A C 24 N4 ? ? ? 1_555 A G 49 O6 ? ? A C 24 A G 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A C 24 O2 ? ? ? 1_555 A G 49 N2 ? ? A C 24 A G 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A C 25 N3 ? ? ? 1_555 A G 48 N1 ? ? A C 25 A G 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A C 25 N4 ? ? ? 1_555 A G 48 O6 ? ? A C 25 A G 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A C 25 O2 ? ? ? 1_555 A G 48 N2 ? ? A C 25 A G 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A C 26 N3 ? ? ? 1_555 A G 47 N1 ? ? A C 26 A G 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A C 26 N4 ? ? ? 1_555 A G 47 O6 ? ? A C 26 A G 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A C 26 O2 ? ? ? 1_555 A G 47 N2 ? ? A C 26 A G 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A G 27 N1 ? ? ? 1_555 A C 46 N3 ? ? A G 27 A C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A G 27 N2 ? ? ? 1_555 A C 46 O2 ? ? A G 27 A C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A G 27 O6 ? ? ? 1_555 A C 46 N4 ? ? A G 27 A C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A G 28 N1 ? ? ? 1_555 A C 45 N3 ? ? A G 28 A C 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A G 28 N2 ? ? ? 1_555 A C 45 O2 ? ? A G 28 A C 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A G 28 O6 ? ? ? 1_555 A C 45 N4 ? ? A G 28 A C 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A C 29 N3 ? ? ? 1_555 A G 44 N1 ? ? A C 29 A G 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A C 29 N4 ? ? ? 1_555 A G 44 O6 ? ? A C 29 A G 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A C 29 O2 ? ? ? 1_555 A G 44 N2 ? ? A C 29 A G 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A G 30 N1 ? ? ? 1_555 A U 43 O2 ? ? A G 30 A U 43 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog52 hydrog ? ? A G 30 O6 ? ? ? 1_555 A U 43 N3 ? ? A G 30 A U 43 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog53 hydrog ? ? A U 31 N3 ? ? ? 1_555 A A 42 N1 ? ? A U 31 A A 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A U 31 O4 ? ? ? 1_555 A A 42 N6 ? ? A U 31 A A 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A G 32 N1 ? ? ? 1_555 A C 41 N3 ? ? A G 32 A C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? A G 32 N2 ? ? ? 1_555 A C 41 O2 ? ? A G 32 A C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? A G 32 O6 ? ? ? 1_555 A C 41 N4 ? ? A G 32 A C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? A U 33 O4 ? ? ? 1_555 A C 40 N4 ? ? A U 33 A C 40 1_555 ? ? ? ? ? ? 'U-C MISPAIR' ? ? ? hydrog59 hydrog ? ? A A 52 N6 ? ? ? 1_555 A C 83 O2 ? ? A A 52 A C 83 1_555 ? ? ? ? ? ? 'A-C MISPAIR' ? ? ? hydrog60 hydrog ? ? A A 52 N3 ? ? ? 1_555 A G 85 N2 ? ? A A 52 A G 85 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? ? hydrog61 hydrog ? ? A A 53 N6 ? ? ? 1_555 A C 83 O2 ? ? A A 53 A C 83 1_555 ? ? ? ? ? ? 'A-C MISPAIR' ? ? ? hydrog62 hydrog ? ? A A 54 N1 ? ? ? 1_555 A U 82 N3 ? ? A A 54 A U 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? A A 54 N6 ? ? ? 1_555 A U 82 O4 ? ? A A 54 A U 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? A C 55 N3 ? ? ? 1_555 A G 81 N1 ? ? A C 55 A G 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? A C 55 N4 ? ? ? 1_555 A G 81 O6 ? ? A C 55 A G 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? A C 55 O2 ? ? ? 1_555 A G 81 N2 ? ? A C 55 A G 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? A C 56 N3 ? ? ? 1_555 A G 80 N1 ? ? A C 56 A G 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? A C 56 N4 ? ? ? 1_555 A G 80 O6 ? ? A C 56 A G 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? A C 56 O2 ? ? ? 1_555 A G 80 N2 ? ? A C 56 A G 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? A C 57 N3 ? ? ? 1_555 A G 78 N1 ? ? A C 57 A G 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? A C 57 N4 ? ? ? 1_555 A G 78 O6 ? ? A C 57 A G 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? A C 57 O2 ? ? ? 1_555 A G 78 N2 ? ? A C 57 A G 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? A A 58 N1 ? ? ? 1_555 A U 77 N3 ? ? A A 58 A U 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? A A 58 N6 ? ? ? 1_555 A U 77 O4 ? ? A A 58 A U 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? A U 59 N3 ? ? ? 1_555 A G 76 O6 ? ? A U 59 A G 76 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog76 hydrog ? ? A U 59 O2 ? ? ? 1_555 A G 76 N1 ? ? A U 59 A G 76 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog77 hydrog ? ? A A 60 N1 ? ? ? 1_555 A U 75 N3 ? ? A A 60 A U 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog78 hydrog ? ? A A 60 N6 ? ? ? 1_555 A U 75 O4 ? ? A A 60 A U 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? A G 61 N1 ? ? ? 1_555 A C 74 N3 ? ? A G 61 A C 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog80 hydrog ? ? A G 61 N2 ? ? ? 1_555 A C 74 O2 ? ? A G 61 A C 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog81 hydrog ? ? A G 61 O6 ? ? ? 1_555 A C 74 N4 ? ? A G 61 A C 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog82 hydrog ? ? A G 62 N1 ? ? ? 1_555 A C 73 N3 ? ? A G 62 A C 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog83 hydrog ? ? A G 62 N2 ? ? ? 1_555 A C 73 O2 ? ? A G 62 A C 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog84 hydrog ? ? A G 62 O6 ? ? ? 1_555 A C 73 N4 ? ? A G 62 A C 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog85 hydrog ? ? A G 63 N1 ? ? ? 1_555 A C 72 N3 ? ? A G 63 A C 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog86 hydrog ? ? A G 63 N2 ? ? ? 1_555 A C 72 O2 ? ? A G 63 A C 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog87 hydrog ? ? A G 63 O6 ? ? ? 1_555 A C 72 N4 ? ? A G 63 A C 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C3'" A GTP 1 ? ? "O3'" A GTP 1 ? ? P A A 2 ? ? 108.49 119.70 -11.21 1.20 Y 2 1 C2 A C 7 ? ? N3 A C 7 ? ? C4 A C 7 ? ? 116.83 119.90 -3.07 0.50 N 3 1 N3 A C 7 ? ? C4 A C 7 ? ? C5 A C 7 ? ? 124.87 121.90 2.97 0.40 N # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[1][1]_esd _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][2]_esd _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[1][3]_esd _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[2][2]_esd _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.T[2][3]_esd _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[3][3]_esd _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[1][1]_esd _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][2]_esd _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[1][3]_esd _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[2][2]_esd _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.L[2][3]_esd _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[3][3]_esd _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][1]_esd _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][2]_esd _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[1][3]_esd _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][1]_esd _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][2]_esd _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][3]_esd _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][1]_esd _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][2]_esd _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[3][3]_esd 1 'X-RAY DIFFRACTION' ? refined 39.6306 32.5707 112.2689 1.4715 ? 0.0973 ? -0.0139 ? 1.2153 ? 0.0568 ? 0.1126 ? 1.2992 ? -0.1641 ? 0.4744 ? 0.6611 ? -0.7004 ? 3.0610 ? -0.0347 ? 0.1173 ? 0.1569 ? -0.0795 ? 0.2393 ? 0.0650 ? -0.3545 ? -0.0441 ? 0.2624 ? 2 'X-RAY DIFFRACTION' ? refined 38.1328 34.0055 111.6188 1.3153 ? 0.1632 ? 0.0096 ? 1.4402 ? 0.0316 ? 0.0638 ? 0.0483 ? 0.0739 ? -0.1158 ? 0.1704 ? -0.1833 ? 0.2612 ? -0.0536 ? 0.0242 ? 0.1142 ? 0.0323 ? 0.1414 ? 0.1659 ? -0.1804 ? 0.0529 ? 0.6101 ? 3 'X-RAY DIFFRACTION' ? refined 29.3461 33.8066 139.4242 1.8146 ? 0.1386 ? 0.1838 ? 1.7020 ? 0.0867 ? 0.4489 ? 4.5330 ? -0.6618 ? -0.8138 ? 2.5972 ? 0.3817 ? 1.8752 ? 0.1768 ? -0.8309 ? -0.0624 ? 0.5674 ? 0.6403 ? 0.3469 ? 0.1680 ? -0.1328 ? -0.1387 ? 4 'X-RAY DIFFRACTION' ? refined 32.2857 28.7196 154.2597 2.5578 ? 0.3519 ? 0.0648 ? 2.7745 ? 0.1941 ? 1.5894 ? 5.5602 ? -4.0080 ? 5.0131 ? 2.9289 ? -3.6140 ? 4.5232 ? 0.9675 ? -1.1389 ? 1.4418 ? 1.7222 ? 1.2545 ? 0.4273 ? -0.4817 ? -4.5330 ? -2.2625 ? 5 'X-RAY DIFFRACTION' ? refined 29.5086 31.6703 135.9026 1.6269 ? -0.0280 ? 0.0228 ? 1.8725 ? 0.0352 ? 0.5436 ? 6.2238 ? -4.2846 ? 7.0120 ? 6.3956 ? -3.7177 ? 8.2623 ? -0.2671 ? 0.1621 ? 0.2214 ? -0.1923 ? 0.6229 ? -0.1680 ? 0.5797 ? 0.0957 ? -0.2860 ? 6 'X-RAY DIFFRACTION' ? refined 19.7436 39.8230 105.9064 1.1835 ? 0.3715 ? 0.0106 ? 1.5005 ? 0.0184 ? 0.4395 ? 1.9014 ? 0.2278 ? 0.7432 ? 2.8534 ? -0.1109 ? 2.3628 ? -0.1135 ? -0.1824 ? 0.0687 ? 0.0183 ? -0.5731 ? 0.0681 ? -1.1771 ? 0.1506 ? 0.5293 ? 7 'X-RAY DIFFRACTION' ? refined 8.1988 52.7133 109.2699 1.3603 ? 0.0992 ? -0.0317 ? 1.2083 ? -0.0994 ? 0.4165 ? 1.1318 ? 0.6644 ? 1.3218 ? 1.6774 ? 0.8950 ? 1.5505 ? 0.1568 ? 0.2426 ? -0.1251 ? 0.1702 ? 0.0740 ? 0.0463 ? 0.1077 ? 0.1704 ? -0.1681 ? 8 'X-RAY DIFFRACTION' ? refined 0.3027 60.4335 101.6942 1.2764 ? 0.1363 ? 0.0044 ? 1.1815 ? 0.0621 ? 0.4450 ? 1.2148 ? 0.3912 ? -0.1116 ? 3.2722 ? 0.5993 ? 0.3381 ? -0.2082 ? 0.1801 ? 0.3017 ? 0.5694 ? 0.3490 ? 0.5809 ? 0.0179 ? -0.3555 ? -0.0827 ? 9 'X-RAY DIFFRACTION' ? refined 14.9880 48.3393 111.1564 1.4221 ? 0.2066 ? -0.0144 ? 1.1944 ? -0.0002 ? 0.2261 ? 2.4697 ? 0.6419 ? -2.4008 ? 1.0422 ? 1.0596 ? 5.5739 ? -0.2048 ? -0.0143 ? -0.3365 ? 0.1893 ? 0.3210 ? -0.2035 ? 0.6978 ? 0.5843 ? -0.1419 ? 10 'X-RAY DIFFRACTION' ? refined 15.6378 32.5842 109.4651 1.1219 ? 0.1074 ? -0.0495 ? 1.1529 ? 0.0142 ? 0.6192 ? 5.9885 ? -2.5917 ? 1.9982 ? 8.4466 ? -3.7625 ? 1.8875 ? -0.4370 ? -1.7978 ? -0.7430 ? 1.6757 ? 0.6271 ? 0.6501 ? -0.2316 ? 0.7404 ? -0.2862 ? 11 'X-RAY DIFFRACTION' ? refined 40.1165 39.4849 98.0523 1.4331 ? 0.2038 ? 0.0074 ? 1.2719 ? -0.0684 ? 0.1726 ? 1.1884 ? 0.4367 ? -1.6256 ? 0.2336 ? -0.6143 ? 2.2111 ? 0.2034 ? 0.1457 ? 0.0772 ? -0.0061 ? 0.1124 ? 0.0099 ? -0.3945 ? 0.3585 ? -0.0750 ? 12 'X-RAY DIFFRACTION' ? refined 65.8448 26.3191 92.3020 1.6267 ? 0.1572 ? -0.1591 ? 1.8411 ? 0.2957 ? 1.2754 ? 8.2404 ? 2.3299 ? -0.8221 ? 5.3839 ? -0.5864 ? 0.1083 ? -0.3734 ? -2.7207 ? -1.2371 ? 0.4879 ? -0.3174 ? -1.1814 ? -0.5389 ? 0.4909 ? 0.6429 ? # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_PDB_ins_code _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_PDB_ins_code _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 1 'X-RAY DIFFRACTION' 1 ? ? ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 2 through 10 ) ; 2 'X-RAY DIFFRACTION' 2 ? ? ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 11 through 22 ) ; 3 'X-RAY DIFFRACTION' 3 ? ? ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 23 through 30 ) ; 4 'X-RAY DIFFRACTION' 4 ? ? ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 31 through 40 ) ; 5 'X-RAY DIFFRACTION' 5 ? ? ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 41 through 51 ) ; 6 'X-RAY DIFFRACTION' 6 ? ? ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 52 through 56 ) ; 7 'X-RAY DIFFRACTION' 7 ? ? ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 57 through 63 ) ; 8 'X-RAY DIFFRACTION' 8 ? ? ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 64 through 72 ) ; 9 'X-RAY DIFFRACTION' 9 ? ? ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 73 through 79 ) ; 10 'X-RAY DIFFRACTION' 10 ? ? ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 80 through 84 ) ; 11 'X-RAY DIFFRACTION' 11 ? ? ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 85 through 94 ) ; 12 'X-RAY DIFFRACTION' 12 ? ? ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 95 through 101 ) ; # _pdbx_entry_details.entry_id 8TOZ _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.has_protein_modification ? # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A C 34 ? A C 34 2 1 Y 1 A U 35 ? A U 35 3 1 Y 1 A C 36 ? A C 36 4 1 Y 1 A G 37 ? A G 37 5 1 Y 1 A A 38 ? A A 38 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 GTP PG P N N 111 GTP O1G O N N 112 GTP O2G O N N 113 GTP O3G O N N 114 GTP O3B O N N 115 GTP PB P N N 116 GTP O1B O N N 117 GTP O2B O N N 118 GTP O3A O N N 119 GTP PA P N N 120 GTP O1A O N N 121 GTP O2A O N N 122 GTP "O5'" O N N 123 GTP "C5'" C N N 124 GTP "C4'" C N R 125 GTP "O4'" O N N 126 GTP "C3'" C N S 127 GTP "O3'" O N N 128 GTP "C2'" C N R 129 GTP "O2'" O N N 130 GTP "C1'" C N R 131 GTP N9 N Y N 132 GTP C8 C Y N 133 GTP N7 N Y N 134 GTP C5 C Y N 135 GTP C6 C N N 136 GTP O6 O N N 137 GTP N1 N N N 138 GTP C2 C N N 139 GTP N2 N N N 140 GTP N3 N N N 141 GTP C4 C Y N 142 GTP HOG2 H N N 143 GTP HOG3 H N N 144 GTP HOB2 H N N 145 GTP HOA2 H N N 146 GTP "H5'" H N N 147 GTP "H5''" H N N 148 GTP "H4'" H N N 149 GTP "H3'" H N N 150 GTP "HO3'" H N N 151 GTP "H2'" H N N 152 GTP "HO2'" H N N 153 GTP "H1'" H N N 154 GTP H8 H N N 155 GTP HN1 H N N 156 GTP HN21 H N N 157 GTP HN22 H N N 158 HOH O O N N 159 HOH H1 H N N 160 HOH H2 H N N 161 PRF N1 N N N 162 PRF C2 C N N 163 PRF N3 N N N 164 PRF C4 C Y N 165 PRF C5 C Y N 166 PRF C6 C N N 167 PRF O6 O N N 168 PRF C7 C Y N 169 PRF C10 C N N 170 PRF N11 N N N 171 PRF C8 C Y N 172 PRF N9 N Y N 173 PRF N2 N N N 174 PRF H91 H N N 175 PRF H101 H N N 176 PRF H102 H N N 177 PRF H111 H N N 178 PRF H112 H N N 179 PRF H81 H N N 180 PRF HN91 H N N 181 PRF HN21 H N N 182 PRF HN22 H N N 183 U OP3 O N N 184 U P P N N 185 U OP1 O N N 186 U OP2 O N N 187 U "O5'" O N N 188 U "C5'" C N N 189 U "C4'" C N R 190 U "O4'" O N N 191 U "C3'" C N S 192 U "O3'" O N N 193 U "C2'" C N R 194 U "O2'" O N N 195 U "C1'" C N R 196 U N1 N N N 197 U C2 C N N 198 U O2 O N N 199 U N3 N N N 200 U C4 C N N 201 U O4 O N N 202 U C5 C N N 203 U C6 C N N 204 U HOP3 H N N 205 U HOP2 H N N 206 U "H5'" H N N 207 U "H5''" H N N 208 U "H4'" H N N 209 U "H3'" H N N 210 U "HO3'" H N N 211 U "H2'" H N N 212 U "HO2'" H N N 213 U "H1'" H N N 214 U H3 H N N 215 U H5 H N N 216 U H6 H N N 217 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 GTP PG O1G doub N N 116 GTP PG O2G sing N N 117 GTP PG O3G sing N N 118 GTP PG O3B sing N N 119 GTP O2G HOG2 sing N N 120 GTP O3G HOG3 sing N N 121 GTP O3B PB sing N N 122 GTP PB O1B doub N N 123 GTP PB O2B sing N N 124 GTP PB O3A sing N N 125 GTP O2B HOB2 sing N N 126 GTP O3A PA sing N N 127 GTP PA O1A doub N N 128 GTP PA O2A sing N N 129 GTP PA "O5'" sing N N 130 GTP O2A HOA2 sing N N 131 GTP "O5'" "C5'" sing N N 132 GTP "C5'" "C4'" sing N N 133 GTP "C5'" "H5'" sing N N 134 GTP "C5'" "H5''" sing N N 135 GTP "C4'" "O4'" sing N N 136 GTP "C4'" "C3'" sing N N 137 GTP "C4'" "H4'" sing N N 138 GTP "O4'" "C1'" sing N N 139 GTP "C3'" "O3'" sing N N 140 GTP "C3'" "C2'" sing N N 141 GTP "C3'" "H3'" sing N N 142 GTP "O3'" "HO3'" sing N N 143 GTP "C2'" "O2'" sing N N 144 GTP "C2'" "C1'" sing N N 145 GTP "C2'" "H2'" sing N N 146 GTP "O2'" "HO2'" sing N N 147 GTP "C1'" N9 sing N N 148 GTP "C1'" "H1'" sing N N 149 GTP N9 C8 sing Y N 150 GTP N9 C4 sing Y N 151 GTP C8 N7 doub Y N 152 GTP C8 H8 sing N N 153 GTP N7 C5 sing Y N 154 GTP C5 C6 sing N N 155 GTP C5 C4 doub Y N 156 GTP C6 O6 doub N N 157 GTP C6 N1 sing N N 158 GTP N1 C2 sing N N 159 GTP N1 HN1 sing N N 160 GTP C2 N2 sing N N 161 GTP C2 N3 doub N N 162 GTP N2 HN21 sing N N 163 GTP N2 HN22 sing N N 164 GTP N3 C4 sing N N 165 HOH O H1 sing N N 166 HOH O H2 sing N N 167 PRF N1 C2 sing N N 168 PRF N1 C6 sing N N 169 PRF N1 H91 sing N N 170 PRF C2 N3 doub N N 171 PRF C2 N2 sing N N 172 PRF N3 C4 sing N N 173 PRF C4 C5 doub Y N 174 PRF C4 N9 sing Y N 175 PRF C5 C6 sing N N 176 PRF C5 C7 sing Y N 177 PRF C6 O6 doub N N 178 PRF C7 C10 sing N N 179 PRF C7 C8 doub Y N 180 PRF C10 N11 sing N N 181 PRF C10 H101 sing N N 182 PRF C10 H102 sing N N 183 PRF N11 H111 sing N N 184 PRF N11 H112 sing N N 185 PRF C8 N9 sing Y N 186 PRF C8 H81 sing N N 187 PRF N9 HN91 sing N N 188 PRF N2 HN21 sing N N 189 PRF N2 HN22 sing N N 190 U OP3 P sing N N 191 U OP3 HOP3 sing N N 192 U P OP1 doub N N 193 U P OP2 sing N N 194 U P "O5'" sing N N 195 U OP2 HOP2 sing N N 196 U "O5'" "C5'" sing N N 197 U "C5'" "C4'" sing N N 198 U "C5'" "H5'" sing N N 199 U "C5'" "H5''" sing N N 200 U "C4'" "O4'" sing N N 201 U "C4'" "C3'" sing N N 202 U "C4'" "H4'" sing N N 203 U "O4'" "C1'" sing N N 204 U "C3'" "O3'" sing N N 205 U "C3'" "C2'" sing N N 206 U "C3'" "H3'" sing N N 207 U "O3'" "HO3'" sing N N 208 U "C2'" "O2'" sing N N 209 U "C2'" "C1'" sing N N 210 U "C2'" "H2'" sing N N 211 U "O2'" "HO2'" sing N N 212 U "C1'" N1 sing N N 213 U "C1'" "H1'" sing N N 214 U N1 C2 sing N N 215 U N1 C6 sing N N 216 U C2 O2 doub N N 217 U C2 N3 sing N N 218 U N3 C4 sing N N 219 U N3 H3 sing N N 220 U C4 O4 doub N N 221 U C4 C5 sing N N 222 U C5 C6 doub N N 223 U C5 H5 sing N N 224 U C6 H6 sing N N 225 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 8TOZ 'double helix' 8TOZ 'a-form double helix' 8TOZ 'hairpin loop' 8TOZ 'bulge loop' 8TOZ 'mismatched base pair' 8TOZ 'triple helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 11 1_555 A C 90 1_555 0.491 -0.030 0.282 4.285 -5.846 -4.528 1 A_G11:C90_A A 11 ? A 90 ? 19 1 1 A G 12 1_555 A U 89 1_555 -1.990 -0.478 0.356 3.152 -10.450 -0.197 2 A_G12:U89_A A 12 ? A 89 ? 28 1 1 A A 13 1_555 A U 88 1_555 -0.190 -0.029 0.415 -1.180 -12.849 -3.148 3 A_A13:U88_A A 13 ? A 88 ? 20 1 1 A U 14 1_555 A A 87 1_555 0.055 -0.229 0.388 -2.023 -11.161 -4.209 4 A_U14:A87_A A 14 ? A 87 ? 20 1 1 A U 15 1_555 A A 86 1_555 0.671 -0.069 0.552 0.506 -5.044 4.880 5 A_U15:A86_A A 15 ? A 86 ? 20 1 1 A U 16 1_555 A G 85 1_555 2.163 -0.449 -0.193 0.122 -10.636 2.446 6 A_U16:G85_A A 16 ? A 85 ? 28 1 1 A A 6 1_555 A A 18 1_555 2.293 2.894 -0.019 -16.149 -2.407 -125.506 7 A_A6:A18_A A 6 ? A 18 ? ? ? 1 A A 5 1_555 A G 19 1_555 -0.643 1.570 -0.066 -5.289 -6.944 -18.623 8 A_A5:G19_A A 5 ? A 19 ? 8 1 1 A G 20 1_555 A C 4 1_555 0.275 -0.077 0.116 3.004 -9.240 -5.220 9 A_G20:C4_A A 20 ? A 4 ? 19 1 1 A C 21 1_555 A G 3 1_555 -0.268 -0.124 0.059 4.739 -12.019 -1.370 10 A_C21:G3_A A 21 ? A 3 ? 19 1 1 A U 22 1_555 A A 2 1_555 0.072 0.020 0.081 2.748 -7.899 1.986 11 A_U22:A2_A A 22 ? A 2 ? 20 1 1 A C 23 1_555 A GTP 1 1_555 0.047 -0.171 -0.096 8.176 -3.497 0.155 12 A_C23:GTP1_A A 23 ? A 1 ? 19 1 1 A C 24 1_555 A G 49 1_555 0.275 0.105 0.318 -1.688 -10.147 5.724 13 A_C24:G49_A A 24 ? A 49 ? 19 1 1 A C 25 1_555 A G 48 1_555 0.289 -0.431 0.384 6.824 -14.678 -3.545 14 A_C25:G48_A A 25 ? A 48 ? 19 1 1 A C 26 1_555 A G 47 1_555 -0.385 -0.108 0.086 5.385 -8.940 -1.920 15 A_C26:G47_A A 26 ? A 47 ? 19 1 1 A G 27 1_555 A C 46 1_555 -0.541 -0.195 0.507 14.263 0.376 -1.700 16 A_G27:C46_A A 27 ? A 46 ? 19 1 1 A G 28 1_555 A C 45 1_555 -1.039 -0.277 -0.288 -0.610 -21.039 2.558 17 A_G28:C45_A A 28 ? A 45 ? 19 1 1 A C 29 1_555 A G 44 1_555 -0.418 0.347 -0.681 11.648 -18.868 10.958 18 A_C29:G44_A A 29 ? A 44 ? 19 1 1 A G 30 1_555 A U 43 1_555 -2.607 -0.662 -0.193 3.618 -17.441 -11.632 19 A_G30:U43_A A 30 ? A 43 ? 28 1 1 A U 31 1_555 A A 42 1_555 -0.993 0.001 0.367 0.247 -18.539 0.942 20 A_U31:A42_A A 31 ? A 42 ? 20 1 1 A G 32 1_555 A C 41 1_555 0.115 0.270 0.112 -8.116 -12.488 6.357 21 A_G32:C41_A A 32 ? A 41 ? 19 1 1 A U 33 1_555 A C 40 1_555 -0.984 0.270 -0.520 13.038 -11.765 -51.831 22 A_U33:C40_A A 33 ? A 40 ? ? ? 1 A A 53 1_555 A C 83 1_555 -5.081 -0.976 0.588 0.855 2.785 11.170 23 A_A53:C83_A A 53 ? A 83 ? ? ? 1 A A 54 1_555 A U 82 1_555 -0.865 0.154 -0.052 5.014 0.522 1.137 24 A_A54:U82_A A 54 ? A 82 ? 20 1 1 A C 55 1_555 A G 81 1_555 0.264 -0.163 -0.480 12.404 -12.680 2.453 25 A_C55:G81_A A 55 ? A 81 ? 19 1 1 A C 56 1_555 A G 80 1_555 0.471 -0.143 0.165 -1.726 -3.471 5.641 26 A_C56:G80_A A 56 ? A 80 ? 19 1 1 A C 57 1_555 A G 78 1_555 -0.404 -0.062 -0.370 5.245 -7.107 1.325 27 A_C57:G78_A A 57 ? A 78 ? 19 1 1 A A 58 1_555 A U 77 1_555 -0.675 -0.161 0.251 4.527 -13.831 1.414 28 A_A58:U77_A A 58 ? A 77 ? 20 1 1 A U 59 1_555 A G 76 1_555 2.122 -0.532 0.488 -2.854 -12.134 2.974 29 A_U59:G76_A A 59 ? A 76 ? 28 1 1 A A 60 1_555 A U 75 1_555 -0.084 -0.227 -0.242 -1.689 -3.506 4.583 30 A_A60:U75_A A 60 ? A 75 ? 20 1 1 A G 61 1_555 A C 74 1_555 -0.140 -0.133 -0.431 -2.005 -11.059 -2.685 31 A_G61:C74_A A 61 ? A 74 ? 19 1 1 A G 62 1_555 A C 73 1_555 0.567 -0.003 -0.466 -17.251 -16.333 0.130 32 A_G62:C73_A A 62 ? A 73 ? 19 1 1 A G 63 1_555 A C 72 1_555 0.578 0.019 -0.443 -15.828 -10.558 -0.530 33 A_G63:C72_A A 63 ? A 72 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 11 1_555 A C 90 1_555 A G 12 1_555 A U 89 1_555 0.167 -2.050 3.040 -3.208 6.661 25.751 -5.892 -1.066 2.404 14.568 7.016 26.774 1 AA_G11G12:U89C90_AA A 11 ? A 90 ? A 12 ? A 89 ? 1 A G 12 1_555 A U 89 1_555 A A 13 1_555 A U 88 1_555 -0.084 -1.470 3.313 -2.430 5.250 38.753 -2.812 -0.162 3.095 7.859 3.637 39.166 2 AA_G12A13:U88U89_AA A 12 ? A 89 ? A 13 ? A 88 ? 1 A A 13 1_555 A U 88 1_555 A U 14 1_555 A A 87 1_555 -0.042 -1.794 3.219 0.390 1.858 32.878 -3.472 0.138 3.115 3.279 -0.688 32.932 3 AA_A13U14:A87U88_AA A 13 ? A 88 ? A 14 ? A 87 ? 1 A U 14 1_555 A A 87 1_555 A U 15 1_555 A A 86 1_555 1.264 -2.060 3.072 0.837 -0.312 34.220 -3.452 -2.023 3.120 -0.531 -1.422 34.232 4 AA_U14U15:A86A87_AA A 14 ? A 87 ? A 15 ? A 86 ? 1 A U 15 1_555 A A 86 1_555 A U 16 1_555 A G 85 1_555 0.215 -2.459 3.083 8.964 2.070 29.307 -5.024 1.230 2.847 3.969 -17.190 30.687 5 AA_U15U16:G85A86_AA A 15 ? A 86 ? A 16 ? A 85 ? 1 A U 16 1_555 A G 85 1_555 A A 6 1_555 A A 18 1_555 1.137 6.540 -1.239 146.392 58.210 -96.798 -2.987 -0.208 -3.215 -30.134 75.784 -165.142 6 AA_U16A6:A18G85_AA A 16 ? A 85 ? A 6 ? A 18 ? 1 A A 6 1_555 A A 18 1_555 A A 5 1_555 A G 19 1_555 0.059 2.134 -3.168 -4.974 -1.689 -85.755 -1.602 0.152 -3.128 1.240 -3.652 -85.885 7 AA_A6A5:G19A18_AA A 6 ? A 18 ? A 5 ? A 19 ? 1 A A 5 1_555 A G 19 1_555 A G 20 1_555 A C 4 1_555 1.164 -3.627 0.216 163.991 -45.378 156.779 -1.802 -0.541 0.631 -22.716 -82.092 178.021 8 AA_A5G20:C4G19_AA A 5 ? A 19 ? A 20 ? A 4 ? 1 A G 20 1_555 A C 4 1_555 A C 21 1_555 A G 3 1_555 0.564 -1.947 3.108 -0.110 7.110 32.061 -4.528 -1.015 2.626 12.679 0.196 32.820 9 AA_G20C21:G3C4_AA A 20 ? A 4 ? A 21 ? A 3 ? 1 A C 21 1_555 A G 3 1_555 A U 22 1_555 A A 2 1_555 -0.033 -1.919 3.308 0.813 5.254 30.518 -4.570 0.213 2.942 9.887 -1.530 30.967 10 AA_C21U22:A2G3_AA A 21 ? A 3 ? A 22 ? A 2 ? 1 A U 22 1_555 A A 2 1_555 A C 23 1_555 A GTP 1 1_555 1.082 -2.249 3.210 0.989 -1.460 26.054 -4.577 -2.124 3.367 -3.234 -2.191 26.113 11 AA_U22C23:GTP1A2_AA A 22 ? A 2 ? A 23 ? A 1 ? 1 A C 23 1_555 A GTP 1 1_555 A C 24 1_555 A G 49 1_555 1.097 -2.215 3.358 -1.209 8.428 36.931 -4.439 -1.837 2.769 13.092 1.878 37.867 12 AA_C23C24:G49GTP1_AA A 23 ? A 1 ? A 24 ? A 49 ? 1 A C 24 1_555 A G 49 1_555 A C 25 1_555 A G 48 1_555 -0.503 -1.728 2.934 -5.866 5.878 35.065 -3.520 0.089 2.666 9.590 9.570 36.005 13 AA_C24C25:G48G49_AA A 24 ? A 49 ? A 25 ? A 48 ? 1 A C 25 1_555 A G 48 1_555 A C 26 1_555 A G 47 1_555 -0.777 -2.003 3.108 -2.238 7.860 28.106 -5.464 1.112 2.520 15.768 4.489 29.248 14 AA_C25C26:G47G48_AA A 25 ? A 48 ? A 26 ? A 47 ? 1 A C 26 1_555 A G 47 1_555 A G 27 1_555 A C 46 1_555 -0.108 -1.602 2.902 -5.054 5.174 31.668 -3.638 -0.563 2.600 9.329 9.113 32.463 15 AA_C26G27:C46G47_AA A 26 ? A 47 ? A 27 ? A 46 ? 1 A G 27 1_555 A C 46 1_555 A G 28 1_555 A C 45 1_555 0.782 -2.252 3.589 5.298 8.182 26.398 -6.598 -0.340 2.875 17.188 -11.131 28.110 16 AA_G27G28:C45C46_AA A 27 ? A 46 ? A 28 ? A 45 ? 1 A G 28 1_555 A C 45 1_555 A C 29 1_555 A G 44 1_555 0.060 -1.263 2.973 3.894 -1.311 38.809 -1.746 0.341 3.005 -1.966 -5.840 39.017 17 AA_G28C29:G44C45_AA A 28 ? A 45 ? A 29 ? A 44 ? 1 A C 29 1_555 A G 44 1_555 A G 30 1_555 A U 43 1_555 -0.603 -2.293 3.490 -3.566 18.829 18.069 -9.066 0.564 0.863 46.249 8.759 26.281 18 AA_C29G30:U43G44_AA A 29 ? A 44 ? A 30 ? A 43 ? 1 A G 30 1_555 A U 43 1_555 A U 31 1_555 A A 42 1_555 0.537 -1.064 3.325 -6.528 7.174 43.025 -2.081 -1.319 3.010 9.636 8.768 44.055 19 AA_G30U31:A42U43_AA A 30 ? A 43 ? A 31 ? A 42 ? 1 A U 31 1_555 A A 42 1_555 A G 32 1_555 A C 41 1_555 0.174 -1.514 3.548 2.547 10.117 34.980 -3.859 0.084 3.013 16.386 -4.126 36.456 20 AA_U31G32:C41A42_AA A 31 ? A 42 ? A 32 ? A 41 ? 1 A G 32 1_555 A C 41 1_555 A U 33 1_555 A C 40 1_555 -2.712 -1.203 3.083 4.537 11.536 24.137 -4.878 6.697 1.800 25.544 -10.045 27.092 21 AA_G32U33:C40C41_AA A 32 ? A 41 ? A 33 ? A 40 ? 1 A A 53 1_555 A C 83 1_555 A A 54 1_555 A U 82 1_555 -1.031 -1.101 3.314 -3.069 8.583 43.580 -2.241 1.080 3.116 11.412 4.081 44.478 22 AA_A53A54:U82C83_AA A 53 ? A 83 ? A 54 ? A 82 ? 1 A A 54 1_555 A U 82 1_555 A C 55 1_555 A G 81 1_555 -0.054 -1.406 3.086 1.245 5.790 36.008 -2.976 0.244 2.831 9.288 -1.997 36.476 23 AA_A54C55:G81U82_AA A 54 ? A 82 ? A 55 ? A 81 ? 1 A C 55 1_555 A G 81 1_555 A C 56 1_555 A G 80 1_555 0.422 -1.922 3.420 -5.432 11.590 35.979 -4.338 -1.299 2.611 18.074 8.471 38.117 24 AA_C55C56:G80G81_AA A 55 ? A 81 ? A 56 ? A 80 ? 1 A C 56 1_555 A G 80 1_555 A C 57 1_555 A G 78 1_555 0.459 -1.552 2.936 5.457 4.290 34.586 -3.124 -0.044 2.768 7.126 -9.065 35.255 25 AA_C56C57:G78G80_AA A 56 ? A 80 ? A 57 ? A 78 ? 1 A C 57 1_555 A G 78 1_555 A A 58 1_555 A U 77 1_555 0.271 -1.764 3.177 -3.467 11.238 28.006 -5.336 -1.124 2.268 22.032 6.797 30.330 26 AA_C57A58:U77G78_AA A 57 ? A 78 ? A 58 ? A 77 ? 1 A A 58 1_555 A U 77 1_555 A U 59 1_555 A G 76 1_555 0.098 -1.251 3.408 -0.873 8.409 42.353 -2.532 -0.219 3.113 11.501 1.195 43.151 27 AA_A58U59:G76U77_AA A 58 ? A 77 ? A 59 ? A 76 ? 1 A U 59 1_555 A G 76 1_555 A A 60 1_555 A U 75 1_555 -0.185 -1.992 2.945 4.491 10.143 25.077 -6.171 1.261 1.945 22.036 -9.757 27.385 28 AA_U59A60:U75G76_AA A 59 ? A 76 ? A 60 ? A 75 ? 1 A A 60 1_555 A U 75 1_555 A G 61 1_555 A C 74 1_555 -0.339 -1.560 3.302 0.552 8.918 27.342 -5.017 0.800 2.663 18.257 -1.131 28.739 29 AA_A60G61:C74U75_AA A 60 ? A 75 ? A 61 ? A 74 ? 1 A G 61 1_555 A C 74 1_555 A G 62 1_555 A C 73 1_555 0.232 -1.715 3.792 -0.585 9.016 37.819 -3.788 -0.427 3.308 13.673 0.887 38.845 30 AA_G61G62:C73C74_AA A 61 ? A 74 ? A 62 ? A 73 ? 1 A G 62 1_555 A C 73 1_555 A G 63 1_555 A C 72 1_555 -0.028 -1.675 3.373 3.891 8.149 30.648 -4.477 0.734 2.821 15.013 -7.169 31.920 31 AA_G62G63:C72C73_AA A 62 ? A 73 ? A 63 ? A 72 ? # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number GM63162-14 _pdbx_audit_support.ordinal 1 # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id PRF _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id PRF _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 4rzd _pdbx_initial_refinement_model.details ? # _atom_sites.entry_id 8TOZ _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 0.011893 _atom_sites.fract_transf_matrix[1][2] 0.006867 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013733 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.003561 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H N O P # loop_