HEADER RNA 04-AUG-23 8TOZ TITLE CLASS III PREQ1 RIBOSWITCH DOUBLE MUTANT U8C/A85G COMPND MOL_ID: 1; COMPND 2 MOLECULE: CLASS-III PREQ1 RIBOSWITCH; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: FAECALIBACTERIUM PRAUSNITZII; SOURCE 4 ORGANISM_TAXID: 853 KEYWDS PREQ1, QUEUOSINE, THREE-WAY HELICAL JUNCTION, APTAMER, METABOLITE, KEYWDS 2 TRANSLATIONAL REGULATION, HL(OUT)-TYPE PSEUDOKNOT, RIBOSWITCH, RNA EXPDTA X-RAY DIFFRACTION AUTHOR Y.SRIVASTAVA,J.L.JENKINS,J.E.WEDEKIND REVDAT 1 07-AUG-24 8TOZ 0 JRNL AUTH Y.SRIVASTAVA,J.L.JERMAINE,J.E.WEDEKIND JRNL TITL NEW INSIGHTS INTO CLASS III PREQ1 METABOLITE BINDING JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.20.1_4487: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.35 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.910 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 21797 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.920 REMARK 3 FREE R VALUE TEST SET COUNT : 2163 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.3500 - 7.3800 0.99 1328 156 0.1939 0.2137 REMARK 3 2 7.3800 - 5.8700 1.00 1333 145 0.1728 0.2077 REMARK 3 3 5.8700 - 5.1300 1.00 1340 154 0.1744 0.1875 REMARK 3 4 5.1300 - 4.6600 1.00 1313 148 0.1787 0.2057 REMARK 3 5 4.6600 - 4.3300 1.00 1355 151 0.1630 0.2087 REMARK 3 6 4.3300 - 4.0700 1.00 1319 143 0.1690 0.1738 REMARK 3 7 4.0700 - 3.8700 0.99 1330 138 0.1842 0.2107 REMARK 3 8 3.8700 - 3.7000 0.98 1307 146 0.1998 0.2367 REMARK 3 9 3.7000 - 3.5600 0.97 1290 149 0.2209 0.2401 REMARK 3 10 3.5600 - 3.4300 0.96 1304 137 0.2532 0.2690 REMARK 3 11 3.4300 - 3.3300 0.97 1271 144 0.2624 0.2619 REMARK 3 12 3.3300 - 3.2300 0.96 1270 140 0.2684 0.2697 REMARK 3 13 3.2300 - 3.1500 0.96 1316 148 0.2983 0.3367 REMARK 3 14 3.1500 - 3.0700 0.96 1290 132 0.3426 0.3033 REMARK 3 15 3.0700 - 3.0000 0.96 1268 132 0.3467 0.3909 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.310 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.200 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 2303 REMARK 3 ANGLE : 0.694 3585 REMARK 3 CHIRALITY : 0.030 478 REMARK 3 PLANARITY : 0.006 98 REMARK 3 DIHEDRAL : 13.506 1158 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.6306 32.5707 112.2689 REMARK 3 T TENSOR REMARK 3 T11: 1.4715 T22: 1.2153 REMARK 3 T33: 0.1126 T12: 0.0973 REMARK 3 T13: -0.0139 T23: 0.0568 REMARK 3 L TENSOR REMARK 3 L11: 1.2992 L22: 0.6611 REMARK 3 L33: 3.0610 L12: -0.1641 REMARK 3 L13: 0.4744 L23: -0.7004 REMARK 3 S TENSOR REMARK 3 S11: -0.0347 S12: 0.1173 S13: 0.1569 REMARK 3 S21: -0.0795 S22: 0.2393 S23: 0.0650 REMARK 3 S31: -0.3545 S32: -0.0441 S33: 0.2624 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 11 THROUGH 22 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.1328 34.0055 111.6188 REMARK 3 T TENSOR REMARK 3 T11: 1.3153 T22: 1.4402 REMARK 3 T33: 0.0638 T12: 0.1632 REMARK 3 T13: 0.0096 T23: 0.0316 REMARK 3 L TENSOR REMARK 3 L11: 0.0483 L22: 0.1704 REMARK 3 L33: 0.2612 L12: 0.0739 REMARK 3 L13: -0.1158 L23: -0.1833 REMARK 3 S TENSOR REMARK 3 S11: -0.0536 S12: 0.0242 S13: 0.1142 REMARK 3 S21: 0.0323 S22: 0.1414 S23: 0.1659 REMARK 3 S31: -0.1804 S32: 0.0529 S33: 0.6101 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 23 THROUGH 30 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.3461 33.8066 139.4242 REMARK 3 T TENSOR REMARK 3 T11: 1.8146 T22: 1.7020 REMARK 3 T33: 0.4489 T12: 0.1386 REMARK 3 T13: 0.1838 T23: 0.0867 REMARK 3 L TENSOR REMARK 3 L11: 4.5330 L22: 2.5972 REMARK 3 L33: 1.8752 L12: -0.6618 REMARK 3 L13: -0.8138 L23: 0.3817 REMARK 3 S TENSOR REMARK 3 S11: 0.1768 S12: -0.8309 S13: -0.0624 REMARK 3 S21: 0.5674 S22: 0.6403 S23: 0.3469 REMARK 3 S31: 0.1680 S32: -0.1328 S33: -0.1387 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 31 THROUGH 40 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.2857 28.7196 154.2597 REMARK 3 T TENSOR REMARK 3 T11: 2.5578 T22: 2.7745 REMARK 3 T33: 1.5894 T12: 0.3519 REMARK 3 T13: 0.0648 T23: 0.1941 REMARK 3 L TENSOR REMARK 3 L11: 5.5602 L22: 2.9289 REMARK 3 L33: 4.5232 L12: -4.0080 REMARK 3 L13: 5.0131 L23: -3.6140 REMARK 3 S TENSOR REMARK 3 S11: 0.9675 S12: -1.1389 S13: 1.4418 REMARK 3 S21: 1.7222 S22: 1.2545 S23: 0.4273 REMARK 3 S31: -0.4817 S32: -4.5330 S33: -2.2625 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 41 THROUGH 51 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.5086 31.6703 135.9026 REMARK 3 T TENSOR REMARK 3 T11: 1.6269 T22: 1.8725 REMARK 3 T33: 0.5436 T12: -0.0280 REMARK 3 T13: 0.0228 T23: 0.0352 REMARK 3 L TENSOR REMARK 3 L11: 6.2238 L22: 6.3956 REMARK 3 L33: 8.2623 L12: -4.2846 REMARK 3 L13: 7.0120 L23: -3.7177 REMARK 3 S TENSOR REMARK 3 S11: -0.2671 S12: 0.1621 S13: 0.2214 REMARK 3 S21: -0.1923 S22: 0.6229 S23: -0.1680 REMARK 3 S31: 0.5797 S32: 0.0957 S33: -0.2860 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 52 THROUGH 56 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.7436 39.8230 105.9064 REMARK 3 T TENSOR REMARK 3 T11: 1.1835 T22: 1.5005 REMARK 3 T33: 0.4395 T12: 0.3715 REMARK 3 T13: 0.0106 T23: 0.0184 REMARK 3 L TENSOR REMARK 3 L11: 1.9014 L22: 2.8534 REMARK 3 L33: 2.3628 L12: 0.2278 REMARK 3 L13: 0.7432 L23: -0.1109 REMARK 3 S TENSOR REMARK 3 S11: -0.1135 S12: -0.1824 S13: 0.0687 REMARK 3 S21: 0.0183 S22: -0.5731 S23: 0.0681 REMARK 3 S31: -1.1771 S32: 0.1506 S33: 0.5293 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 57 THROUGH 63 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.1988 52.7133 109.2699 REMARK 3 T TENSOR REMARK 3 T11: 1.3603 T22: 1.2083 REMARK 3 T33: 0.4165 T12: 0.0992 REMARK 3 T13: -0.0317 T23: -0.0994 REMARK 3 L TENSOR REMARK 3 L11: 1.1318 L22: 1.6774 REMARK 3 L33: 1.5505 L12: 0.6644 REMARK 3 L13: 1.3218 L23: 0.8950 REMARK 3 S TENSOR REMARK 3 S11: 0.1568 S12: 0.2426 S13: -0.1251 REMARK 3 S21: 0.1702 S22: 0.0740 S23: 0.0463 REMARK 3 S31: 0.1077 S32: 0.1704 S33: -0.1681 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 64 THROUGH 72 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.3027 60.4335 101.6942 REMARK 3 T TENSOR REMARK 3 T11: 1.2764 T22: 1.1815 REMARK 3 T33: 0.4450 T12: 0.1363 REMARK 3 T13: 0.0044 T23: 0.0621 REMARK 3 L TENSOR REMARK 3 L11: 1.2148 L22: 3.2722 REMARK 3 L33: 0.3381 L12: 0.3912 REMARK 3 L13: -0.1116 L23: 0.5993 REMARK 3 S TENSOR REMARK 3 S11: -0.2082 S12: 0.1801 S13: 0.3017 REMARK 3 S21: 0.5694 S22: 0.3490 S23: 0.5809 REMARK 3 S31: 0.0179 S32: -0.3555 S33: -0.0827 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 73 THROUGH 79 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.9880 48.3393 111.1564 REMARK 3 T TENSOR REMARK 3 T11: 1.4221 T22: 1.1944 REMARK 3 T33: 0.2261 T12: 0.2066 REMARK 3 T13: -0.0144 T23: -0.0002 REMARK 3 L TENSOR REMARK 3 L11: 2.4697 L22: 1.0422 REMARK 3 L33: 5.5739 L12: 0.6419 REMARK 3 L13: -2.4008 L23: 1.0596 REMARK 3 S TENSOR REMARK 3 S11: -0.2048 S12: -0.0143 S13: -0.3365 REMARK 3 S21: 0.1893 S22: 0.3210 S23: -0.2035 REMARK 3 S31: 0.6978 S32: 0.5843 S33: -0.1419 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 80 THROUGH 84 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.6378 32.5842 109.4651 REMARK 3 T TENSOR REMARK 3 T11: 1.1219 T22: 1.1529 REMARK 3 T33: 0.6192 T12: 0.1074 REMARK 3 T13: -0.0495 T23: 0.0142 REMARK 3 L TENSOR REMARK 3 L11: 5.9885 L22: 8.4466 REMARK 3 L33: 1.8875 L12: -2.5917 REMARK 3 L13: 1.9982 L23: -3.7625 REMARK 3 S TENSOR REMARK 3 S11: -0.4370 S12: -1.7978 S13: -0.7430 REMARK 3 S21: 1.6757 S22: 0.6271 S23: 0.6501 REMARK 3 S31: -0.2316 S32: 0.7404 S33: -0.2862 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 85 THROUGH 94 ) REMARK 3 ORIGIN FOR THE GROUP (A): 40.1165 39.4849 98.0523 REMARK 3 T TENSOR REMARK 3 T11: 1.4331 T22: 1.2719 REMARK 3 T33: 0.1726 T12: 0.2038 REMARK 3 T13: 0.0074 T23: -0.0684 REMARK 3 L TENSOR REMARK 3 L11: 1.1884 L22: 0.2336 REMARK 3 L33: 2.2111 L12: 0.4367 REMARK 3 L13: -1.6256 L23: -0.6143 REMARK 3 S TENSOR REMARK 3 S11: 0.2034 S12: 0.1457 S13: 0.0772 REMARK 3 S21: -0.0061 S22: 0.1124 S23: 0.0099 REMARK 3 S31: -0.3945 S32: 0.3585 S33: -0.0750 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 95 THROUGH 101 ) REMARK 3 ORIGIN FOR THE GROUP (A): 65.8448 26.3191 92.3020 REMARK 3 T TENSOR REMARK 3 T11: 1.6267 T22: 1.8411 REMARK 3 T33: 1.2754 T12: 0.1572 REMARK 3 T13: -0.1591 T23: 0.2957 REMARK 3 L TENSOR REMARK 3 L11: 8.2404 L22: 5.3839 REMARK 3 L33: 0.1083 L12: 2.3299 REMARK 3 L13: -0.8221 L23: -0.5864 REMARK 3 S TENSOR REMARK 3 S11: -0.3734 S12: -2.7207 S13: -1.2371 REMARK 3 S21: 0.4879 S22: -0.3174 S23: -1.1814 REMARK 3 S31: -0.5389 S32: 0.4909 S33: 0.6429 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8TOZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-AUG-23. REMARK 100 THE DEPOSITION ID IS D_1000276325. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-SEP-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97946 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21799 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 38.350 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 8.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 8.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 71.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 65% TACSIMATE PH 7, 50MM NA REMARK 280 -CACODYLATEPH 7, 1MM SPERMINE HCL, 0.006M HEXAMMINE COBALT (III) REMARK 280 CHLORIDE, 5MM MG ACETATE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 187.21733 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 93.60867 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 140.41300 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 46.80433 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 234.02167 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 187.21733 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 93.60867 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 46.80433 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 140.41300 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 234.02167 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 C A 34 REMARK 465 U A 35 REMARK 465 C A 36 REMARK 465 G A 37 REMARK 465 A A 38 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 A A 39 P OP1 OP2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GTP A 1 C3' - O3' - P ANGL. DEV. = -11.2 DEGREES REMARK 500 C A 7 C2 - N3 - C4 ANGL. DEV. = -3.1 DEGREES REMARK 500 C A 7 N3 - C4 - C5 ANGL. DEV. = 3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL DBREF 8TOZ A 1 101 PDB 8TOZ 8TOZ 1 101 SEQRES 1 A 101 GTP A G C A A C C U A G G A SEQRES 2 A 101 U U U U A G G C U C C C C SEQRES 3 A 101 G G C G U G U C U C G A A SEQRES 4 A 101 C C A U G C C G G G C C A SEQRES 5 A 101 A A C C C A U A G G G C U SEQRES 6 A 101 G G C G G U C C C U G U G SEQRES 7 A 101 C G G U C A G A A U U C A SEQRES 8 A 101 U C C G C C G G A G HET GTP A 1 41 HET PRF A 201 22 HETNAM GTP GUANOSINE-5'-TRIPHOSPHATE HETNAM PRF 7-DEAZA-7-AMINOMETHYL-GUANINE FORMUL 1 GTP C10 H16 N5 O14 P3 FORMUL 2 PRF C7 H9 N5 O FORMUL 3 HOH *5(H2 O) LINK O3' GTP A 1 P A A 2 1555 1555 1.60 CRYST1 84.082 84.082 280.826 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011893 0.006867 0.000000 0.00000 SCALE2 0.000000 0.013733 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003561 0.00000 HETATM 1 PG GTP A 1 31.450 46.097 129.356 1.00209.91 P HETATM 2 O1G GTP A 1 31.730 47.397 130.083 1.00200.04 O HETATM 3 O2G GTP A 1 31.489 44.953 130.351 1.00180.55 O HETATM 4 O3G GTP A 1 32.493 45.893 128.278 1.00175.84 O HETATM 5 O3B GTP A 1 29.970 46.206 128.707 1.00204.55 O HETATM 6 PB GTP A 1 29.713 46.642 127.169 1.00210.63 P HETATM 7 O1B GTP A 1 29.164 48.052 127.121 1.00199.53 O HETATM 8 O2B GTP A 1 30.981 46.528 126.347 1.00183.19 O HETATM 9 O3A GTP A 1 28.595 45.590 126.659 1.00193.73 O HETATM 10 PA GTP A 1 28.905 44.584 125.436 1.00202.23 P HETATM 11 O1A GTP A 1 27.666 43.780 125.110 1.00176.37 O HETATM 12 O2A GTP A 1 29.427 45.337 124.227 1.00171.63 O HETATM 13 O5' GTP A 1 30.028 43.607 126.064 1.00177.66 O HETATM 14 C5' GTP A 1 31.159 43.237 125.303 1.00151.89 C HETATM 15 C4' GTP A 1 32.351 43.206 126.245 1.00130.65 C HETATM 16 O4' GTP A 1 32.047 42.408 127.404 1.00116.37 O HETATM 17 C3' GTP A 1 33.702 42.704 125.689 1.00134.51 C HETATM 18 O3' GTP A 1 34.425 43.726 125.060 1.00124.16 O HETATM 19 C2' GTP A 1 34.368 42.134 126.960 1.00116.97 C HETATM 20 O2' GTP A 1 35.137 43.134 127.579 1.00105.96 O HETATM 21 C1' GTP A 1 33.203 41.704 127.866 1.00 99.22 C HETATM 22 N9 GTP A 1 32.963 40.257 127.759 1.00 88.51 N HETATM 23 C8 GTP A 1 31.788 39.635 127.415 1.00107.28 C HETATM 24 N7 GTP A 1 31.983 38.289 127.433 1.00 76.79 N HETATM 25 C5 GTP A 1 33.261 38.061 127.795 1.00 76.78 C HETATM 26 C6 GTP A 1 33.966 36.883 127.975 1.00 83.59 C HETATM 27 O6 GTP A 1 33.393 35.804 127.781 1.00 89.28 O HETATM 28 N1 GTP A 1 35.291 36.948 128.373 1.00 73.50 N HETATM 29 C2 GTP A 1 35.885 38.185 128.579 1.00 78.91 C HETATM 30 N2 GTP A 1 37.160 38.258 128.952 1.00 77.69 N HETATM 31 N3 GTP A 1 35.173 39.355 128.398 1.00 71.77 N HETATM 32 C4 GTP A 1 33.881 39.284 128.014 1.00 78.90 C HETATM 33 H4' GTP A 1 32.498 44.263 126.466 1.00156.96 H HETATM 34 H3' GTP A 1 33.626 41.965 124.892 1.00161.58 H HETATM 35 H2' GTP A 1 35.041 41.303 126.747 1.00140.54 H HETATM 36 HO2' GTP A 1 34.772 43.322 128.469 1.00127.33 H HETATM 37 H1' GTP A 1 33.441 41.933 128.904 1.00119.24 H HETATM 38 H8 GTP A 1 30.853 40.138 127.169 1.00128.91 H HETATM 39 HN1 GTP A 1 35.837 36.075 128.516 1.00 88.37 H HETATM 40 HN21 GTP A 1 37.594 39.164 129.099 1.00 93.40 H HETATM 41 HN22 GTP A 1 37.698 37.409 129.089 1.00 93.40 H