HEADER VIRAL PROTEIN/INHIBITOR 04-AUG-23 8TPB TITLE SYNTHESIS, X-RAY CRYSTALLOGRAPHIC AND BIOLOGICAL ACTIVITIES OF TITLE 2 COVALENT, NON-PEPTIDIC INHIBITORS OF SARS-COV-2 MAIN PROTEASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: NON-STRUCTURAL PROTEIN 7; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: NSP7; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 3 2; SOURCE 4 ORGANISM_TAXID: 2697049; SOURCE 5 GENE: REP, 1A-1B; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NON-PEPTIDIC INHIBITORS, INHIBITORS, SARS-COV-2, MAIN PROTEASE, MPRO, KEYWDS 2 VIRAL PROTEIN, VIRAL PROTEIN-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR T.K.CHUA,Y.SONG REVDAT 2 21-FEB-24 8TPB 1 JRNL REVDAT 1 24-JAN-24 8TPB 0 JRNL AUTH M.ASHRAF-UZ-ZAMAN,T.K.CHUA,X.LI,Y.YAO,B.K.MOKU,C.B.MISHRA, JRNL AUTH 2 V.AVADHANULA,P.A.PIEDRA,Y.SONG JRNL TITL DESIGN, SYNTHESIS, X-RAY CRYSTALLOGRAPHY, AND BIOLOGICAL JRNL TITL 2 ACTIVITIES OF COVALENT, NON-PEPTIDIC INHIBITORS OF JRNL TITL 3 SARS-COV-2 MAIN PROTEASE. JRNL REF ACS INFECT DIS. V. 10 715 2024 JRNL REFN ESSN 2373-8227 JRNL PMID 38192109 JRNL DOI 10.1021/ACSINFECDIS.3C00565 REMARK 2 REMARK 2 RESOLUTION. 1.88 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.14_3260: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.88 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.84 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 43299 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.770 REMARK 3 FREE R VALUE TEST SET COUNT : 1632 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.8420 - 4.3029 0.99 3608 146 0.1489 0.2009 REMARK 3 2 4.3029 - 3.4158 1.00 3541 139 0.1517 0.1856 REMARK 3 3 3.4158 - 2.9841 1.00 3531 138 0.1816 0.2179 REMARK 3 4 2.9841 - 2.7113 1.00 3551 134 0.2083 0.2772 REMARK 3 5 2.7113 - 2.5170 1.00 3522 141 0.2198 0.3115 REMARK 3 6 2.5170 - 2.3686 1.00 3498 138 0.2373 0.3130 REMARK 3 7 2.3686 - 2.2500 1.00 3489 134 0.2461 0.3160 REMARK 3 8 2.2500 - 2.1520 1.00 3517 136 0.2612 0.3121 REMARK 3 9 2.1520 - 2.0692 0.99 3481 142 0.2734 0.3188 REMARK 3 10 2.0692 - 1.9978 0.99 3474 139 0.2933 0.3438 REMARK 3 11 1.9978 - 1.9353 0.96 3365 123 0.3299 0.3657 REMARK 3 12 1.9353 - 1.8800 0.88 3090 122 0.3979 0.4517 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.350 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.070 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 4952 REMARK 3 ANGLE : 1.055 6750 REMARK 3 CHIRALITY : 0.060 751 REMARK 3 PLANARITY : 0.006 880 REMARK 3 DIHEDRAL : 6.643 4461 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 62 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.8390 8.5500 14.0541 REMARK 3 T TENSOR REMARK 3 T11: 0.3850 T22: 0.4975 REMARK 3 T33: 0.3057 T12: 0.1933 REMARK 3 T13: -0.0412 T23: -0.0529 REMARK 3 L TENSOR REMARK 3 L11: 2.2077 L22: 3.1080 REMARK 3 L33: 5.4140 L12: -1.0920 REMARK 3 L13: 1.1611 L23: 0.2006 REMARK 3 S TENSOR REMARK 3 S11: 0.3023 S12: 0.5480 S13: -0.1398 REMARK 3 S21: -0.6127 S22: -0.3799 S23: 0.4852 REMARK 3 S31: -0.2322 S32: -0.5237 S33: 0.0496 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 63 THROUGH 91 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.8401 18.1869 11.5204 REMARK 3 T TENSOR REMARK 3 T11: 0.7019 T22: 0.5406 REMARK 3 T33: 0.4343 T12: 0.3155 REMARK 3 T13: -0.0734 T23: -0.0159 REMARK 3 L TENSOR REMARK 3 L11: 1.9030 L22: 3.8689 REMARK 3 L33: 3.2920 L12: 0.2876 REMARK 3 L13: 1.3115 L23: -0.0815 REMARK 3 S TENSOR REMARK 3 S11: 0.2531 S12: 0.1811 S13: 0.4203 REMARK 3 S21: -0.4782 S22: -0.3907 S23: 0.3007 REMARK 3 S31: -0.3369 S32: -0.5677 S33: 0.1505 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 92 THROUGH 180 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.0617 2.8658 16.0828 REMARK 3 T TENSOR REMARK 3 T11: 0.2554 T22: 0.3983 REMARK 3 T33: 0.2394 T12: 0.1446 REMARK 3 T13: 0.0328 T23: -0.0175 REMARK 3 L TENSOR REMARK 3 L11: 1.3428 L22: 4.6562 REMARK 3 L33: 4.1402 L12: 0.1254 REMARK 3 L13: 1.1623 L23: 0.0813 REMARK 3 S TENSOR REMARK 3 S11: 0.2139 S12: 0.3263 S13: -0.0688 REMARK 3 S21: -0.4023 S22: -0.1801 S23: -0.2824 REMARK 3 S31: 0.1023 S32: 0.3403 S33: -0.0209 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 181 THROUGH 214 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.5971 -10.4530 13.1626 REMARK 3 T TENSOR REMARK 3 T11: 0.4477 T22: 0.5345 REMARK 3 T33: 0.2437 T12: 0.3394 REMARK 3 T13: 0.0477 T23: -0.2823 REMARK 3 L TENSOR REMARK 3 L11: 1.4853 L22: 3.2731 REMARK 3 L33: 1.8418 L12: -2.1895 REMARK 3 L13: -0.0126 L23: -0.6211 REMARK 3 S TENSOR REMARK 3 S11: 0.3304 S12: 0.1469 S13: -0.6283 REMARK 3 S21: -0.6431 S22: 0.0421 S23: 0.6715 REMARK 3 S31: 0.6024 S32: 0.0309 S33: 0.5463 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 215 THROUGH 274 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.7530 -20.9851 15.3370 REMARK 3 T TENSOR REMARK 3 T11: 0.5628 T22: 0.6351 REMARK 3 T33: 0.4537 T12: 0.3204 REMARK 3 T13: -0.0433 T23: -0.1272 REMARK 3 L TENSOR REMARK 3 L11: 3.7298 L22: 1.5897 REMARK 3 L33: 1.9052 L12: 0.4530 REMARK 3 L13: -1.2550 L23: -0.8282 REMARK 3 S TENSOR REMARK 3 S11: 0.1310 S12: 0.2785 S13: -0.4304 REMARK 3 S21: -0.3616 S22: -0.1454 S23: 0.0728 REMARK 3 S31: 0.3999 S32: 0.3944 S33: 0.0337 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 275 THROUGH 305 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.9944 -11.2821 24.5430 REMARK 3 T TENSOR REMARK 3 T11: 0.5362 T22: 0.6370 REMARK 3 T33: 0.4631 T12: 0.2872 REMARK 3 T13: 0.0023 T23: -0.1175 REMARK 3 L TENSOR REMARK 3 L11: 3.5884 L22: 3.6815 REMARK 3 L33: 2.7869 L12: 1.9010 REMARK 3 L13: -0.7695 L23: -1.6442 REMARK 3 S TENSOR REMARK 3 S11: 0.2001 S12: -0.1099 S13: 0.1012 REMARK 3 S21: 0.7350 S22: -0.1811 S23: 0.0533 REMARK 3 S31: -0.2380 S32: 0.2218 S33: -0.0709 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 43 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.5599 9.1624 37.9892 REMARK 3 T TENSOR REMARK 3 T11: 0.2798 T22: 0.3341 REMARK 3 T33: 0.3051 T12: -0.0646 REMARK 3 T13: -0.0054 T23: 0.0802 REMARK 3 L TENSOR REMARK 3 L11: 2.7733 L22: 1.5482 REMARK 3 L33: 4.1057 L12: 0.2076 REMARK 3 L13: 1.8000 L23: -0.9380 REMARK 3 S TENSOR REMARK 3 S11: -0.3080 S12: 0.5322 S13: 0.2702 REMARK 3 S21: -0.1186 S22: -0.0053 S23: -0.2508 REMARK 3 S31: -0.6408 S32: 0.7928 S33: 0.2012 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 44 THROUGH 70 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.3161 10.7701 49.1984 REMARK 3 T TENSOR REMARK 3 T11: 0.4310 T22: 0.6338 REMARK 3 T33: 0.7836 T12: -0.2340 REMARK 3 T13: -0.1647 T23: 0.0536 REMARK 3 L TENSOR REMARK 3 L11: 0.0833 L22: 3.5677 REMARK 3 L33: 5.9252 L12: 0.0692 REMARK 3 L13: 0.5347 L23: -0.3178 REMARK 3 S TENSOR REMARK 3 S11: -0.8686 S12: 1.1318 S13: 0.6723 REMARK 3 S21: -0.0580 S22: 0.5172 S23: -1.3181 REMARK 3 S31: -0.6199 S32: 1.3057 S33: 0.4448 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 71 THROUGH 120 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.6302 12.2929 42.9419 REMARK 3 T TENSOR REMARK 3 T11: 0.3500 T22: 0.2646 REMARK 3 T33: 0.3725 T12: -0.1001 REMARK 3 T13: -0.0506 T23: 0.0758 REMARK 3 L TENSOR REMARK 3 L11: 1.1909 L22: 3.4689 REMARK 3 L33: 3.2382 L12: -0.8272 REMARK 3 L13: 1.8425 L23: -0.1362 REMARK 3 S TENSOR REMARK 3 S11: -0.3039 S12: 0.2313 S13: 0.5285 REMARK 3 S21: 0.1686 S22: -0.1157 S23: -0.2916 REMARK 3 S31: -0.8260 S32: 0.5349 S33: 0.2315 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 121 THROUGH 139 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.0980 -4.1280 38.7049 REMARK 3 T TENSOR REMARK 3 T11: 0.2480 T22: 0.2067 REMARK 3 T33: 0.2983 T12: 0.0193 REMARK 3 T13: -0.0257 T23: -0.0199 REMARK 3 L TENSOR REMARK 3 L11: 1.9802 L22: 3.5117 REMARK 3 L33: 2.8646 L12: -0.5922 REMARK 3 L13: 1.1924 L23: -2.9376 REMARK 3 S TENSOR REMARK 3 S11: 0.2647 S12: 0.2000 S13: -0.2250 REMARK 3 S21: -0.1070 S22: -0.0947 S23: 0.0056 REMARK 3 S31: 0.3269 S32: 0.5708 S33: -0.1625 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 140 THROUGH 200 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.8730 -0.9484 44.7349 REMARK 3 T TENSOR REMARK 3 T11: 0.1595 T22: 0.2074 REMARK 3 T33: 0.2243 T12: 0.0164 REMARK 3 T13: 0.0459 T23: 0.0166 REMARK 3 L TENSOR REMARK 3 L11: 2.7116 L22: 4.1575 REMARK 3 L33: 4.3167 L12: 2.0074 REMARK 3 L13: 1.9245 L23: 0.0568 REMARK 3 S TENSOR REMARK 3 S11: 0.1793 S12: 0.1959 S13: -0.2111 REMARK 3 S21: 0.0949 S22: -0.0831 S23: -0.1087 REMARK 3 S31: 0.1176 S32: 0.4014 S33: -0.0830 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 201 THROUGH 274 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.7353 -19.0387 40.8570 REMARK 3 T TENSOR REMARK 3 T11: 0.3262 T22: 0.3430 REMARK 3 T33: 0.6272 T12: -0.0842 REMARK 3 T13: -0.0411 T23: 0.0851 REMARK 3 L TENSOR REMARK 3 L11: 2.8679 L22: 4.3700 REMARK 3 L33: 3.5245 L12: -0.8046 REMARK 3 L13: 1.1068 L23: 0.2696 REMARK 3 S TENSOR REMARK 3 S11: 0.1764 S12: -0.3596 S13: -1.1172 REMARK 3 S21: 0.1137 S22: 0.2343 S23: 0.4736 REMARK 3 S31: 0.6810 S32: -0.6805 S33: -0.3265 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 275 THROUGH 305 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.3437 -10.7142 32.7339 REMARK 3 T TENSOR REMARK 3 T11: 0.2420 T22: 0.3681 REMARK 3 T33: 0.4300 T12: -0.0239 REMARK 3 T13: -0.0500 T23: -0.0509 REMARK 3 L TENSOR REMARK 3 L11: 5.5265 L22: 3.9845 REMARK 3 L33: 6.2834 L12: 0.1324 REMARK 3 L13: -0.6666 L23: -2.6186 REMARK 3 S TENSOR REMARK 3 S11: 0.2011 S12: 1.0063 S13: -0.2244 REMARK 3 S21: -0.3206 S22: -0.3844 S23: 0.0217 REMARK 3 S31: 0.1579 S32: -0.1054 S33: 0.1430 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8TPB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-AUG-23. REMARK 100 THE DEPOSITION ID IS D_1000276104. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JUL-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97919 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52904 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.630 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 79.4 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : 0.10900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.69 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.72 REMARK 200 COMPLETENESS FOR SHELL (%) : 24.6 REMARK 200 DATA REDUNDANCY IN SHELL : 1.50 REMARK 200 R MERGE FOR SHELL (I) : 4.45700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.82 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 3350, 0.1M HEPES PH 7.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 295.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 26.79850 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24520 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 217 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 217 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 222 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 637 O HOH B 742 1.87 REMARK 500 ND1 HIS A 64 O HOH A 601 1.90 REMARK 500 O HOH A 683 O HOH A 699 2.02 REMARK 500 OD1 ASP B 34 O HOH B 601 2.05 REMARK 500 O HOH B 766 O HOH B 774 2.06 REMARK 500 O HOH B 740 O HOH B 752 2.06 REMARK 500 O LEU A 75 O HOH A 602 2.06 REMARK 500 O HOH A 717 O HOH A 738 2.07 REMARK 500 O HOH A 653 O HOH A 716 2.08 REMARK 500 N ASN B 221 O HOH B 602 2.12 REMARK 500 O HOH A 682 O HOH A 718 2.12 REMARK 500 O HOH B 613 O HOH B 762 2.12 REMARK 500 OG SER A 62 O HOH A 603 2.14 REMARK 500 O ASN A 72 O HOH A 604 2.15 REMARK 500 O ALA A 194 O HOH A 605 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 612 O HOH A 696 2545 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 128 CB CYS A 128 SG -0.097 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 33 -134.06 56.12 REMARK 500 ASN A 51 79.26 -163.49 REMARK 500 ASN A 84 -118.37 52.61 REMARK 500 TYR A 154 -100.02 52.37 REMARK 500 ASP B 33 -131.65 50.52 REMARK 500 ASN B 51 75.73 -160.59 REMARK 500 ASN B 84 -117.02 45.32 REMARK 500 TYR B 154 -92.16 44.94 REMARK 500 REMARK 500 REMARK: NULL DBREF 8TPB A 1 305 UNP P0DTD1 R1AB_SARS2 3264 3568 DBREF 8TPB B 1 305 UNP P0DTD1 R1AB_SARS2 3264 3568 SEQRES 1 A 305 SER GLY PHE ARG LYS MET ALA PHE PRO SER GLY LYS VAL SEQRES 2 A 305 GLU GLY CYS MET VAL GLN VAL THR CYS GLY THR THR THR SEQRES 3 A 305 LEU ASN GLY LEU TRP LEU ASP ASP VAL VAL TYR CYS PRO SEQRES 4 A 305 ARG HIS VAL ILE CYS THR SER GLU ASP MET LEU ASN PRO SEQRES 5 A 305 ASN TYR GLU ASP LEU LEU ILE ARG LYS SER ASN HIS ASN SEQRES 6 A 305 PHE LEU VAL GLN ALA GLY ASN VAL GLN LEU ARG VAL ILE SEQRES 7 A 305 GLY HIS SER MET GLN ASN CYS VAL LEU LYS LEU LYS VAL SEQRES 8 A 305 ASP THR ALA ASN PRO LYS THR PRO LYS TYR LYS PHE VAL SEQRES 9 A 305 ARG ILE GLN PRO GLY GLN THR PHE SER VAL LEU ALA CYS SEQRES 10 A 305 TYR ASN GLY SER PRO SER GLY VAL TYR GLN CYS ALA MET SEQRES 11 A 305 ARG PRO ASN PHE THR ILE LYS GLY SER PHE LEU ASN GLY SEQRES 12 A 305 SER CYS GLY SER VAL GLY PHE ASN ILE ASP TYR ASP CYS SEQRES 13 A 305 VAL SER PHE CYS TYR MET HIS HIS MET GLU LEU PRO THR SEQRES 14 A 305 GLY VAL HIS ALA GLY THR ASP LEU GLU GLY ASN PHE TYR SEQRES 15 A 305 GLY PRO PHE VAL ASP ARG GLN THR ALA GLN ALA ALA GLY SEQRES 16 A 305 THR ASP THR THR ILE THR VAL ASN VAL LEU ALA TRP LEU SEQRES 17 A 305 TYR ALA ALA VAL ILE ASN GLY ASP ARG TRP PHE LEU ASN SEQRES 18 A 305 ARG PHE THR THR THR LEU ASN ASP PHE ASN LEU VAL ALA SEQRES 19 A 305 MET LYS TYR ASN TYR GLU PRO LEU THR GLN ASP HIS VAL SEQRES 20 A 305 ASP ILE LEU GLY PRO LEU SER ALA GLN THR GLY ILE ALA SEQRES 21 A 305 VAL LEU ASP MET CYS ALA SER LEU LYS GLU LEU LEU GLN SEQRES 22 A 305 ASN GLY MET ASN GLY ARG THR ILE LEU GLY SER ALA LEU SEQRES 23 A 305 LEU GLU ASP GLU PHE THR PRO PHE ASP VAL VAL ARG GLN SEQRES 24 A 305 CYS SER GLY VAL THR PHE SEQRES 1 B 305 SER GLY PHE ARG LYS MET ALA PHE PRO SER GLY LYS VAL SEQRES 2 B 305 GLU GLY CYS MET VAL GLN VAL THR CYS GLY THR THR THR SEQRES 3 B 305 LEU ASN GLY LEU TRP LEU ASP ASP VAL VAL TYR CYS PRO SEQRES 4 B 305 ARG HIS VAL ILE CYS THR SER GLU ASP MET LEU ASN PRO SEQRES 5 B 305 ASN TYR GLU ASP LEU LEU ILE ARG LYS SER ASN HIS ASN SEQRES 6 B 305 PHE LEU VAL GLN ALA GLY ASN VAL GLN LEU ARG VAL ILE SEQRES 7 B 305 GLY HIS SER MET GLN ASN CYS VAL LEU LYS LEU LYS VAL SEQRES 8 B 305 ASP THR ALA ASN PRO LYS THR PRO LYS TYR LYS PHE VAL SEQRES 9 B 305 ARG ILE GLN PRO GLY GLN THR PHE SER VAL LEU ALA CYS SEQRES 10 B 305 TYR ASN GLY SER PRO SER GLY VAL TYR GLN CYS ALA MET SEQRES 11 B 305 ARG PRO ASN PHE THR ILE LYS GLY SER PHE LEU ASN GLY SEQRES 12 B 305 SER CYS GLY SER VAL GLY PHE ASN ILE ASP TYR ASP CYS SEQRES 13 B 305 VAL SER PHE CYS TYR MET HIS HIS MET GLU LEU PRO THR SEQRES 14 B 305 GLY VAL HIS ALA GLY THR ASP LEU GLU GLY ASN PHE TYR SEQRES 15 B 305 GLY PRO PHE VAL ASP ARG GLN THR ALA GLN ALA ALA GLY SEQRES 16 B 305 THR ASP THR THR ILE THR VAL ASN VAL LEU ALA TRP LEU SEQRES 17 B 305 TYR ALA ALA VAL ILE ASN GLY ASP ARG TRP PHE LEU ASN SEQRES 18 B 305 ARG PHE THR THR THR LEU ASN ASP PHE ASN LEU VAL ALA SEQRES 19 B 305 MET LYS TYR ASN TYR GLU PRO LEU THR GLN ASP HIS VAL SEQRES 20 B 305 ASP ILE LEU GLY PRO LEU SER ALA GLN THR GLY ILE ALA SEQRES 21 B 305 VAL LEU ASP MET CYS ALA SER LEU LYS GLU LEU LEU GLN SEQRES 22 B 305 ASN GLY MET ASN GLY ARG THR ILE LEU GLY SER ALA LEU SEQRES 23 B 305 LEU GLU ASP GLU PHE THR PRO PHE ASP VAL VAL ARG GLN SEQRES 24 B 305 CYS SER GLY VAL THR PHE HET JVX A 500 28 HET JVX B 500 28 HETNAM JVX N-[(1R)-2-(TERT-BUTYLAMINO)-2-OXO-1-(PYRIDIN-3-YL) HETNAM 2 JVX ETHYL]-N-(4-TERT-BUTYLPHENYL)-2-CHLOROACETAMIDE FORMUL 3 JVX 2(C23 H30 CL N3 O2) FORMUL 5 HOH *314(H2 O) HELIX 1 AA1 SER A 10 GLY A 15 1 6 HELIX 2 AA2 HIS A 41 CYS A 44 5 4 HELIX 3 AA3 SER A 46 ASN A 51 5 6 HELIX 4 AA4 ASN A 53 LYS A 61 1 9 HELIX 5 AA5 SER A 62 HIS A 64 5 3 HELIX 6 AA6 ILE A 200 ASN A 214 1 15 HELIX 7 AA7 THR A 226 TYR A 237 1 12 HELIX 8 AA8 THR A 243 GLY A 258 1 16 HELIX 9 AA9 ALA A 260 GLY A 275 1 16 HELIX 10 AB1 THR A 292 GLY A 302 1 11 HELIX 11 AB2 SER B 10 GLY B 15 1 6 HELIX 12 AB3 HIS B 41 CYS B 44 5 4 HELIX 13 AB4 THR B 45 MET B 49 5 5 HELIX 14 AB5 ASN B 53 LYS B 61 1 9 HELIX 15 AB6 SER B 62 HIS B 64 5 3 HELIX 16 AB7 ILE B 200 ASN B 214 1 15 HELIX 17 AB8 THR B 226 TYR B 237 1 12 HELIX 18 AB9 THR B 243 LEU B 250 1 8 HELIX 19 AC1 LEU B 250 GLY B 258 1 9 HELIX 20 AC2 ALA B 260 GLY B 275 1 16 HELIX 21 AC3 THR B 292 GLY B 302 1 11 SHEET 1 AA1 7 VAL A 73 LEU A 75 0 SHEET 2 AA1 7 PHE A 66 ALA A 70 -1 N ALA A 70 O VAL A 73 SHEET 3 AA1 7 MET A 17 CYS A 22 -1 N THR A 21 O LEU A 67 SHEET 4 AA1 7 THR A 25 LEU A 32 -1 O LEU A 27 N VAL A 20 SHEET 5 AA1 7 VAL A 35 PRO A 39 -1 O TYR A 37 N LEU A 30 SHEET 6 AA1 7 VAL A 86 VAL A 91 -1 O LEU A 87 N CYS A 38 SHEET 7 AA1 7 VAL A 77 GLN A 83 -1 N SER A 81 O LYS A 88 SHEET 1 AA2 5 LYS A 100 PHE A 103 0 SHEET 2 AA2 5 CYS A 156 GLU A 166 1 O VAL A 157 N LYS A 100 SHEET 3 AA2 5 VAL A 148 ASP A 153 -1 N ASN A 151 O SER A 158 SHEET 4 AA2 5 THR A 111 TYR A 118 -1 N SER A 113 O PHE A 150 SHEET 5 AA2 5 SER A 121 ALA A 129 -1 O SER A 123 N ALA A 116 SHEET 1 AA3 3 LYS A 100 PHE A 103 0 SHEET 2 AA3 3 CYS A 156 GLU A 166 1 O VAL A 157 N LYS A 100 SHEET 3 AA3 3 HIS A 172 THR A 175 -1 O THR A 175 N MET A 162 SHEET 1 AA4 7 VAL B 73 LEU B 75 0 SHEET 2 AA4 7 PHE B 66 ALA B 70 -1 N VAL B 68 O LEU B 75 SHEET 3 AA4 7 MET B 17 CYS B 22 -1 N THR B 21 O LEU B 67 SHEET 4 AA4 7 THR B 25 LEU B 32 -1 O LEU B 27 N VAL B 20 SHEET 5 AA4 7 VAL B 35 PRO B 39 -1 O TYR B 37 N LEU B 30 SHEET 6 AA4 7 VAL B 86 VAL B 91 -1 O LEU B 87 N CYS B 38 SHEET 7 AA4 7 VAL B 77 GLN B 83 -1 N GLY B 79 O LYS B 90 SHEET 1 AA5 5 LYS B 100 PHE B 103 0 SHEET 2 AA5 5 CYS B 156 GLU B 166 1 O VAL B 157 N LYS B 100 SHEET 3 AA5 5 VAL B 148 ASP B 153 -1 N ASN B 151 O SER B 158 SHEET 4 AA5 5 THR B 111 TYR B 118 -1 N SER B 113 O PHE B 150 SHEET 5 AA5 5 SER B 121 ALA B 129 -1 O TYR B 126 N VAL B 114 SHEET 1 AA6 3 LYS B 100 PHE B 103 0 SHEET 2 AA6 3 CYS B 156 GLU B 166 1 O VAL B 157 N LYS B 100 SHEET 3 AA6 3 HIS B 172 THR B 175 -1 O ALA B 173 N MET B 165 LINK SG CYS A 145 C07 JVX A 500 1555 1555 1.80 LINK SG CYS B 145 C07 JVX B 500 1555 1555 1.71 CRYST1 44.857 53.597 114.959 90.00 100.21 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022293 0.000000 0.004014 0.00000 SCALE2 0.000000 0.018658 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008839 0.00000