HEADER SUGAR BINDING PROTEIN/IMMUNE SYSTEM 10-AUG-23 8TS0 TITLE CRYSTAL STRUCTURE OF HUMAN ASGR1 CRD (CARBOHYDRATE RECOGNITION DOMAIN) TITLE 2 BOUND TO 8M24 FAB COMPND MOL_ID: 1; COMPND 2 MOLECULE: 8M24 FAB HEAVY CHAIN; COMPND 3 CHAIN: H; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: 8M24 FAB LIGHT CHAIN; COMPND 7 CHAIN: L; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: ASIALOGLYCOPROTEIN RECEPTOR 1; COMPND 11 CHAIN: A; COMPND 12 FRAGMENT: CARBOHYDRATE RECOGNITION DOMAIN; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 8 ORGANISM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 11 MOL_ID: 3; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: ASGR1; SOURCE 16 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS ASGR, ASGPR, 8M24, ENDOCYTOSIS, SUGAR BINDING PROTEIN, SUGAR BINDING KEYWDS 2 PROTEIN-IMMUNE SYSTEM COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR P.SAMPATHKUMAR,Y.LI REVDAT 1 19-JUN-24 8TS0 0 JRNL AUTH P.SAMPATHKUMAR,H.JUNG,H.CHEN,Z.ZHANG,N.SUEN,Y.YANG,Z.HUANG, JRNL AUTH 2 T.LOPEZ,R.BENISCH,S.J.LEE,J.YE,W.C.YEH,Y.LI JRNL TITL TARGETED PROTEIN DEGRADATION SYSTEMS TO ENHANCE WNT JRNL TITL 2 SIGNALING. JRNL REF ELIFE V. 13 2024 JRNL REFN ESSN 2050-084X JRNL PMID 38847394 JRNL DOI 10.7554/ELIFE.93908 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14RC1_3177 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.05 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 66188 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.880 REMARK 3 FREE R VALUE TEST SET COUNT : 3233 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.0470 - 4.8314 1.00 2972 165 0.1614 0.1882 REMARK 3 2 4.8314 - 3.8360 1.00 2819 150 0.1314 0.1718 REMARK 3 3 3.8360 - 3.3515 1.00 2806 140 0.1485 0.1712 REMARK 3 4 3.3515 - 3.0452 1.00 2756 159 0.1644 0.1794 REMARK 3 5 3.0452 - 2.8270 1.00 2746 133 0.1782 0.2210 REMARK 3 6 2.8270 - 2.6604 1.00 2790 118 0.1801 0.1851 REMARK 3 7 2.6604 - 2.5271 1.00 2759 140 0.1761 0.2167 REMARK 3 8 2.5271 - 2.4172 1.00 2722 127 0.1733 0.2213 REMARK 3 9 2.4172 - 2.3241 1.00 2753 139 0.1819 0.2141 REMARK 3 10 2.3241 - 2.2439 1.00 2703 153 0.1835 0.2161 REMARK 3 11 2.2439 - 2.1738 1.00 2706 132 0.1823 0.2253 REMARK 3 12 2.1738 - 2.1116 1.00 2749 149 0.1822 0.2363 REMARK 3 13 2.1116 - 2.0561 1.00 2646 149 0.1807 0.2238 REMARK 3 14 2.0561 - 2.0059 1.00 2765 113 0.1746 0.2103 REMARK 3 15 2.0059 - 1.9603 1.00 2700 131 0.1821 0.2274 REMARK 3 16 1.9603 - 1.9186 1.00 2750 119 0.2032 0.2271 REMARK 3 17 1.9186 - 1.8802 1.00 2692 152 0.2191 0.2672 REMARK 3 18 1.8802 - 1.8447 1.00 2666 141 0.2534 0.2939 REMARK 3 19 1.8447 - 1.8118 1.00 2730 148 0.2820 0.2982 REMARK 3 20 1.8118 - 1.7811 1.00 2667 138 0.2812 0.3030 REMARK 3 21 1.7811 - 1.7523 1.00 2708 151 0.2647 0.2818 REMARK 3 22 1.7523 - 1.7254 1.00 2690 134 0.2810 0.3242 REMARK 3 23 1.7254 - 1.7000 1.00 2660 152 0.2949 0.3189 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.900 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 4561 REMARK 3 ANGLE : 0.870 6218 REMARK 3 CHIRALITY : 0.056 659 REMARK 3 PLANARITY : 0.005 798 REMARK 3 DIHEDRAL : 7.445 3621 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 1 THROUGH 125 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.6835 86.0718 47.0766 REMARK 3 T TENSOR REMARK 3 T11: 0.2286 T22: 0.1914 REMARK 3 T33: 0.2347 T12: 0.0305 REMARK 3 T13: -0.0217 T23: -0.0010 REMARK 3 L TENSOR REMARK 3 L11: 1.2711 L22: 1.9561 REMARK 3 L33: 1.9107 L12: 0.2758 REMARK 3 L13: 1.0121 L23: -1.0871 REMARK 3 S TENSOR REMARK 3 S11: -0.1879 S12: 0.0405 S13: 0.1008 REMARK 3 S21: 0.0588 S22: 0.0775 S23: -0.0504 REMARK 3 S31: -0.2220 S32: 0.1118 S33: 0.0001 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 126 THROUGH 222 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.8921 87.2026 17.7388 REMARK 3 T TENSOR REMARK 3 T11: 0.3040 T22: 0.3244 REMARK 3 T33: 0.3226 T12: -0.0500 REMARK 3 T13: -0.0168 T23: 0.0509 REMARK 3 L TENSOR REMARK 3 L11: 0.6826 L22: 1.1769 REMARK 3 L33: 1.5941 L12: 0.5214 REMARK 3 L13: -0.7400 L23: -0.3763 REMARK 3 S TENSOR REMARK 3 S11: 0.0663 S12: 0.0637 S13: 0.1104 REMARK 3 S21: -0.0019 S22: -0.0122 S23: 0.1933 REMARK 3 S31: -0.1052 S32: -0.2951 S33: -0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 1 THROUGH 110 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.3432 65.6584 45.5292 REMARK 3 T TENSOR REMARK 3 T11: 0.1905 T22: 0.2187 REMARK 3 T33: 0.2283 T12: 0.0190 REMARK 3 T13: -0.0037 T23: 0.0225 REMARK 3 L TENSOR REMARK 3 L11: 0.8939 L22: 1.0334 REMARK 3 L33: 1.1797 L12: 0.3497 REMARK 3 L13: 0.7724 L23: 0.1331 REMARK 3 S TENSOR REMARK 3 S11: -0.1065 S12: 0.0662 S13: -0.0744 REMARK 3 S21: -0.0706 S22: 0.1724 S23: 0.0696 REMARK 3 S31: 0.0627 S32: -0.0276 S33: -0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 111 THROUGH 212 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.7558 73.8632 11.0286 REMARK 3 T TENSOR REMARK 3 T11: 0.4821 T22: 0.3217 REMARK 3 T33: 0.3132 T12: -0.0578 REMARK 3 T13: 0.0109 T23: 0.0516 REMARK 3 L TENSOR REMARK 3 L11: 1.0828 L22: 1.3613 REMARK 3 L33: 0.9847 L12: 0.4435 REMARK 3 L13: 0.2522 L23: -0.2451 REMARK 3 S TENSOR REMARK 3 S11: -0.0625 S12: 0.1790 S13: -0.0327 REMARK 3 S21: -0.4903 S22: 0.0472 S23: -0.1414 REMARK 3 S31: 0.2097 S32: 0.2048 S33: -0.0004 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 153 THROUGH 281 ) REMARK 3 ORIGIN FOR THE GROUP (A): 42.7057 69.2512 72.0619 REMARK 3 T TENSOR REMARK 3 T11: 0.1575 T22: 0.2059 REMARK 3 T33: 0.1811 T12: 0.0412 REMARK 3 T13: -0.0002 T23: -0.0201 REMARK 3 L TENSOR REMARK 3 L11: 1.9632 L22: 1.2780 REMARK 3 L33: 2.7831 L12: -0.3041 REMARK 3 L13: 1.0561 L23: 0.0844 REMARK 3 S TENSOR REMARK 3 S11: 0.1111 S12: 0.1623 S13: -0.0217 REMARK 3 S21: 0.0688 S22: -0.0221 S23: -0.0463 REMARK 3 S31: -0.0354 S32: 0.1808 S33: 0.0037 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8TS0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-AUG-23. REMARK 100 THE DEPOSITION ID IS D_1000276548. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-AUG-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9999 REMARK 200 MONOCHROMATOR : DOUBLE-CRYSTAL, SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 66288 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 38.910 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.00 REMARK 200 R MERGE (I) : 0.10300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 13.60 REMARK 200 R MERGE FOR SHELL (I) : 2.81400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM SPG (SUCCINIC ACID:SODIUM REMARK 280 DIHYDROGEN PHOSPHATE:GLYCINE) BUFFER PH 9.0, 25% PEG1500, CRYO REMARK 280 PROTECTANT: 20% GLYCEROL, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 19.45550 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 83.90250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.15800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 83.90250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 19.45550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.15800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6800 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -68.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER H 136 REMARK 465 SER H 137 REMARK 465 LYS H 138 REMARK 465 SER H 139 REMARK 465 THR H 140 REMARK 465 SER H 141 REMARK 465 GLY H 142 REMARK 465 LYS H 223 REMARK 465 SER H 224 REMARK 465 CYS H 225 REMARK 465 GLY H 226 REMARK 465 SER H 227 REMARK 465 GLY H 228 REMARK 465 SER H 229 REMARK 465 GLY H 230 REMARK 465 HIS H 231 REMARK 465 HIS H 232 REMARK 465 HIS H 233 REMARK 465 HIS H 234 REMARK 465 HIS H 235 REMARK 465 HIS H 236 REMARK 465 GLU L 213 REMARK 465 CYS L 214 REMARK 465 HIS A 123 REMARK 465 HIS A 124 REMARK 465 HIS A 125 REMARK 465 HIS A 126 REMARK 465 HIS A 127 REMARK 465 HIS A 128 REMARK 465 HIS A 129 REMARK 465 HIS A 130 REMARK 465 GLY A 131 REMARK 465 SER A 132 REMARK 465 GLY A 133 REMARK 465 SER A 134 REMARK 465 GLY A 135 REMARK 465 LEU A 136 REMARK 465 ASN A 137 REMARK 465 ASP A 138 REMARK 465 ILE A 139 REMARK 465 PHE A 140 REMARK 465 GLU A 141 REMARK 465 ALA A 142 REMARK 465 GLN A 143 REMARK 465 LYS A 144 REMARK 465 ILE A 145 REMARK 465 GLU A 146 REMARK 465 TRP A 147 REMARK 465 HIS A 148 REMARK 465 GLU A 149 REMARK 465 SER A 150 REMARK 465 GLY A 151 REMARK 465 SER A 152 REMARK 465 ASP A 282 REMARK 465 LYS A 283 REMARK 465 ALA A 284 REMARK 465 SER A 285 REMARK 465 GLN A 286 REMARK 465 GLU A 287 REMARK 465 PRO A 288 REMARK 465 PRO A 289 REMARK 465 LEU A 290 REMARK 465 LEU A 291 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR H 105 -87.72 -123.06 REMARK 500 ASP H 153 61.26 65.74 REMARK 500 TYR L 30 -126.59 57.62 REMARK 500 ALA L 51 -39.46 68.97 REMARK 500 ALA L 84 -178.92 -173.23 REMARK 500 PHE L 91 55.15 -119.56 REMARK 500 ASN A 235 48.97 -140.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 303 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL A 191 O REMARK 620 2 GLU A 197 OE1 71.9 REMARK 620 3 GLU A 197 OE2 83.3 47.7 REMARK 620 4 GLU A 278 OE1 80.2 129.4 88.5 REMARK 620 5 GLU A 278 OE2 129.5 126.6 83.1 51.0 REMARK 620 6 HOH A 441 O 104.0 151.7 160.4 75.2 78.3 REMARK 620 7 HOH A 445 O 85.4 76.9 124.2 142.4 140.4 74.9 REMARK 620 8 HOH A 499 O 148.2 79.6 87.7 130.0 79.1 94.5 74.7 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 216 OD1 REMARK 620 2 ASP A 216 OD2 45.2 REMARK 620 3 ASP A 243 OD1 161.2 152.1 REMARK 620 4 GLU A 253 O 90.5 120.8 81.1 REMARK 620 5 ASP A 254 OD1 71.4 110.9 90.2 75.8 REMARK 620 6 HOH A 461 O 95.3 87.9 81.7 142.5 71.2 REMARK 620 7 HOH A 466 O 102.4 79.8 91.5 73.9 149.0 139.6 REMARK 620 8 HOH A 497 O 116.9 73.8 78.4 143.4 133.8 63.0 76.7 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 302 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 240 OE1 REMARK 620 2 ASP A 242 OD1 74.3 REMARK 620 3 GLU A 253 OE1 146.8 73.0 REMARK 620 4 ASN A 265 OD1 72.2 146.0 140.8 REMARK 620 5 ASP A 266 O 133.3 135.9 71.4 74.3 REMARK 620 6 ASP A 266 OD1 76.0 84.0 95.2 93.1 74.3 REMARK 620 7 GOL A 304 O1 129.7 119.9 73.3 79.0 72.7 147.0 REMARK 620 8 GOL A 304 O2 77.8 72.0 97.2 95.4 137.4 148.3 64.7 REMARK 620 N 1 2 3 4 5 6 7 DBREF 8TS0 H 1 236 PDB 8TS0 8TS0 1 236 DBREF 8TS0 L 1 214 PDB 8TS0 8TS0 1 214 DBREF 8TS0 A 154 291 UNP P07306 ASGR1_HUMAN 154 291 SEQADV 8TS0 HIS A 123 UNP P07306 EXPRESSION TAG SEQADV 8TS0 HIS A 124 UNP P07306 EXPRESSION TAG SEQADV 8TS0 HIS A 125 UNP P07306 EXPRESSION TAG SEQADV 8TS0 HIS A 126 UNP P07306 EXPRESSION TAG SEQADV 8TS0 HIS A 127 UNP P07306 EXPRESSION TAG SEQADV 8TS0 HIS A 128 UNP P07306 EXPRESSION TAG SEQADV 8TS0 HIS A 129 UNP P07306 EXPRESSION TAG SEQADV 8TS0 HIS A 130 UNP P07306 EXPRESSION TAG SEQADV 8TS0 GLY A 131 UNP P07306 EXPRESSION TAG SEQADV 8TS0 SER A 132 UNP P07306 EXPRESSION TAG SEQADV 8TS0 GLY A 133 UNP P07306 EXPRESSION TAG SEQADV 8TS0 SER A 134 UNP P07306 EXPRESSION TAG SEQADV 8TS0 GLY A 135 UNP P07306 EXPRESSION TAG SEQADV 8TS0 LEU A 136 UNP P07306 EXPRESSION TAG SEQADV 8TS0 ASN A 137 UNP P07306 EXPRESSION TAG SEQADV 8TS0 ASP A 138 UNP P07306 EXPRESSION TAG SEQADV 8TS0 ILE A 139 UNP P07306 EXPRESSION TAG SEQADV 8TS0 PHE A 140 UNP P07306 EXPRESSION TAG SEQADV 8TS0 GLU A 141 UNP P07306 EXPRESSION TAG SEQADV 8TS0 ALA A 142 UNP P07306 EXPRESSION TAG SEQADV 8TS0 GLN A 143 UNP P07306 EXPRESSION TAG SEQADV 8TS0 LYS A 144 UNP P07306 EXPRESSION TAG SEQADV 8TS0 ILE A 145 UNP P07306 EXPRESSION TAG SEQADV 8TS0 GLU A 146 UNP P07306 EXPRESSION TAG SEQADV 8TS0 TRP A 147 UNP P07306 EXPRESSION TAG SEQADV 8TS0 HIS A 148 UNP P07306 EXPRESSION TAG SEQADV 8TS0 GLU A 149 UNP P07306 EXPRESSION TAG SEQADV 8TS0 SER A 150 UNP P07306 EXPRESSION TAG SEQADV 8TS0 GLY A 151 UNP P07306 EXPRESSION TAG SEQADV 8TS0 SER A 152 UNP P07306 EXPRESSION TAG SEQADV 8TS0 GLY A 153 UNP P07306 EXPRESSION TAG SEQRES 1 H 236 GLU VAL GLN LEU VAL GLN SER GLY ALA GLU VAL LYS LYS SEQRES 2 H 236 PRO GLY SER SER VAL LYS VAL SER CYS LYS ALA SER GLY SEQRES 3 H 236 TYR THR PHE THR ASN TYR GLY ILE ASN TRP VAL ARG GLN SEQRES 4 H 236 ALA PRO GLY GLN GLY LEU GLU TRP MET GLY GLU ILE PHE SEQRES 5 H 236 PRO ARG SER ASP ASN THR PHE TYR ALA GLN LYS PHE GLN SEQRES 6 H 236 GLY ARG VAL THR ILE THR ALA ASP LYS SER THR SER THR SEQRES 7 H 236 ALA TYR MET GLU LEU SER SER LEU ARG SER GLU ASP THR SEQRES 8 H 236 ALA VAL TYR TYR CYS ALA ARG LYS GLY ARG ASP TYR GLY SEQRES 9 H 236 THR SER HIS TYR PHE ASP TYR TRP GLY GLN GLY THR THR SEQRES 10 H 236 VAL THR VAL SER SER ALA SER THR LYS GLY PRO SER VAL SEQRES 11 H 236 PHE PRO LEU ALA PRO SER SER LYS SER THR SER GLY GLY SEQRES 12 H 236 THR ALA ALA LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO SEQRES 13 H 236 GLU PRO VAL THR VAL SER TRP ASN SER GLY ALA LEU THR SEQRES 14 H 236 SER GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SER SER SEQRES 15 H 236 GLY LEU TYR SER LEU SER SER VAL VAL THR VAL PRO SER SEQRES 16 H 236 SER SER LEU GLY THR GLN THR TYR ILE CYS ASN VAL ASN SEQRES 17 H 236 HIS LYS PRO SER ASN THR LYS VAL ASP LYS LYS VAL GLU SEQRES 18 H 236 PRO LYS SER CYS GLY SER GLY SER GLY HIS HIS HIS HIS SEQRES 19 H 236 HIS HIS SEQRES 1 L 214 ASP ILE GLN MET THR GLN SER PRO SER SER LEU SER ALA SEQRES 2 L 214 SER VAL GLY ASP ARG VAL THR ILE THR CYS ARG ILE SER SEQRES 3 L 214 GLU ASN ILE TYR SER ASN LEU ALA TRP TYR GLN GLN LYS SEQRES 4 L 214 PRO GLY LYS ALA PRO LYS LEU LEU ILE TYR ALA ALA ILE SEQRES 5 L 214 ASN LEU ALA ASP GLY VAL PRO SER ARG PHE SER GLY SER SEQRES 6 L 214 GLY SER GLY THR ASP PHE THR LEU THR ILE SER SER LEU SEQRES 7 L 214 GLN PRO GLU ASP PHE ALA THR TYR TYR CYS GLN HIS PHE SEQRES 8 L 214 TRP GLY THR PRO PHE THR PHE GLY GLN GLY THR LYS LEU SEQRES 9 L 214 GLU ILE LYS ARG THR VAL ALA ALA PRO SER VAL PHE ILE SEQRES 10 L 214 PHE PRO PRO SER ASP GLU GLN LEU LYS SER GLY THR ALA SEQRES 11 L 214 SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG GLU SEQRES 12 L 214 ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU GLN SER SEQRES 13 L 214 GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SER LYS SEQRES 14 L 214 ASP SER THR TYR SER LEU SER SER THR LEU THR LEU SER SEQRES 15 L 214 LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA CYS GLU SEQRES 16 L 214 VAL THR HIS GLN GLY LEU SER SER PRO VAL THR LYS SER SEQRES 17 L 214 PHE ASN ARG GLY GLU CYS SEQRES 1 A 169 HIS HIS HIS HIS HIS HIS HIS HIS GLY SER GLY SER GLY SEQRES 2 A 169 LEU ASN ASP ILE PHE GLU ALA GLN LYS ILE GLU TRP HIS SEQRES 3 A 169 GLU SER GLY SER GLY CYS PRO VAL ASN TRP VAL GLU HIS SEQRES 4 A 169 GLU ARG SER CYS TYR TRP PHE SER ARG SER GLY LYS ALA SEQRES 5 A 169 TRP ALA ASP ALA ASP ASN TYR CYS ARG LEU GLU ASP ALA SEQRES 6 A 169 HIS LEU VAL VAL VAL THR SER TRP GLU GLU GLN LYS PHE SEQRES 7 A 169 VAL GLN HIS HIS ILE GLY PRO VAL ASN THR TRP MET GLY SEQRES 8 A 169 LEU HIS ASP GLN ASN GLY PRO TRP LYS TRP VAL ASP GLY SEQRES 9 A 169 THR ASP TYR GLU THR GLY PHE LYS ASN TRP ARG PRO GLU SEQRES 10 A 169 GLN PRO ASP ASP TRP TYR GLY HIS GLY LEU GLY GLY GLY SEQRES 11 A 169 GLU ASP CYS ALA HIS PHE THR ASP ASP GLY ARG TRP ASN SEQRES 12 A 169 ASP ASP VAL CYS GLN ARG PRO TYR ARG TRP VAL CYS GLU SEQRES 13 A 169 THR GLU LEU ASP LYS ALA SER GLN GLU PRO PRO LEU LEU HET GOL H 301 6 HET GOL H 302 6 HET GOL H 303 6 HET GOL L 301 6 HET GOL L 302 6 HET CA A 301 1 HET CA A 302 1 HET CA A 303 1 HET GOL A 304 6 HETNAM GOL GLYCEROL HETNAM CA CALCIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 4 GOL 6(C3 H8 O3) FORMUL 9 CA 3(CA 2+) FORMUL 13 HOH *416(H2 O) HELIX 1 AA1 THR H 28 TYR H 32 5 5 HELIX 2 AA2 GLN H 62 GLN H 65 5 4 HELIX 3 AA3 ARG H 87 THR H 91 5 5 HELIX 4 AA4 SER H 165 ALA H 167 5 3 HELIX 5 AA5 SER H 196 LEU H 198 5 3 HELIX 6 AA6 LYS H 210 ASN H 213 5 4 HELIX 7 AA7 GLN L 79 PHE L 83 5 5 HELIX 8 AA8 SER L 121 SER L 127 1 7 HELIX 9 AA9 LYS L 183 LYS L 188 1 6 HELIX 10 AB1 ALA A 174 GLU A 185 1 12 HELIX 11 AB2 SER A 194 GLY A 206 1 13 SHEET 1 AA1 4 GLN H 3 GLN H 6 0 SHEET 2 AA1 4 VAL H 18 SER H 25 -1 O LYS H 23 N VAL H 5 SHEET 3 AA1 4 THR H 78 LEU H 83 -1 O MET H 81 N VAL H 20 SHEET 4 AA1 4 VAL H 68 ASP H 73 -1 N ASP H 73 O THR H 78 SHEET 1 AA2 6 GLU H 10 LYS H 12 0 SHEET 2 AA2 6 THR H 116 VAL H 120 1 O THR H 119 N LYS H 12 SHEET 3 AA2 6 ALA H 92 ARG H 101 -1 N ALA H 92 O VAL H 118 SHEET 4 AA2 6 GLY H 33 GLN H 39 -1 N VAL H 37 O TYR H 95 SHEET 5 AA2 6 GLU H 46 ILE H 51 -1 O MET H 48 N TRP H 36 SHEET 6 AA2 6 THR H 58 TYR H 60 -1 O PHE H 59 N GLU H 50 SHEET 1 AA3 4 GLU H 10 LYS H 12 0 SHEET 2 AA3 4 THR H 116 VAL H 120 1 O THR H 119 N LYS H 12 SHEET 3 AA3 4 ALA H 92 ARG H 101 -1 N ALA H 92 O VAL H 118 SHEET 4 AA3 4 HIS H 107 TRP H 112 -1 O TYR H 111 N ARG H 98 SHEET 1 AA4 4 SER H 129 LEU H 133 0 SHEET 2 AA4 4 THR H 144 TYR H 154 -1 O GLY H 148 N LEU H 133 SHEET 3 AA4 4 TYR H 185 PRO H 194 -1 O VAL H 193 N ALA H 145 SHEET 4 AA4 4 VAL H 172 THR H 174 -1 N HIS H 173 O VAL H 190 SHEET 1 AA5 4 SER H 129 LEU H 133 0 SHEET 2 AA5 4 THR H 144 TYR H 154 -1 O GLY H 148 N LEU H 133 SHEET 3 AA5 4 TYR H 185 PRO H 194 -1 O VAL H 193 N ALA H 145 SHEET 4 AA5 4 VAL H 178 LEU H 179 -1 N VAL H 178 O SER H 186 SHEET 1 AA6 3 THR H 160 TRP H 163 0 SHEET 2 AA6 3 TYR H 203 HIS H 209 -1 O ASN H 206 N SER H 162 SHEET 3 AA6 3 THR H 214 VAL H 220 -1 O VAL H 216 N VAL H 207 SHEET 1 AA7 4 MET L 4 SER L 7 0 SHEET 2 AA7 4 VAL L 19 ILE L 25 -1 O ARG L 24 N THR L 5 SHEET 3 AA7 4 ASP L 70 ILE L 75 -1 O LEU L 73 N ILE L 21 SHEET 4 AA7 4 PHE L 62 SER L 67 -1 N SER L 63 O THR L 74 SHEET 1 AA8 6 SER L 10 ALA L 13 0 SHEET 2 AA8 6 THR L 102 ILE L 106 1 O GLU L 105 N LEU L 11 SHEET 3 AA8 6 THR L 85 HIS L 90 -1 N TYR L 86 O THR L 102 SHEET 4 AA8 6 LEU L 33 GLN L 38 -1 N GLN L 38 O THR L 85 SHEET 5 AA8 6 LYS L 45 TYR L 49 -1 O LEU L 47 N TRP L 35 SHEET 6 AA8 6 ASN L 53 LEU L 54 -1 O ASN L 53 N TYR L 49 SHEET 1 AA9 4 SER L 114 PHE L 118 0 SHEET 2 AA9 4 THR L 129 PHE L 139 -1 O LEU L 135 N PHE L 116 SHEET 3 AA9 4 TYR L 173 SER L 182 -1 O LEU L 179 N VAL L 132 SHEET 4 AA9 4 SER L 159 VAL L 163 -1 N GLN L 160 O THR L 178 SHEET 1 AB1 4 ALA L 153 LEU L 154 0 SHEET 2 AB1 4 LYS L 145 VAL L 150 -1 N VAL L 150 O ALA L 153 SHEET 3 AB1 4 VAL L 191 THR L 197 -1 O GLU L 195 N GLN L 147 SHEET 4 AB1 4 VAL L 205 ASN L 210 -1 O VAL L 205 N VAL L 196 SHEET 1 AB2 5 VAL A 159 HIS A 161 0 SHEET 2 AB2 5 SER A 164 PHE A 168 -1 O TYR A 166 N VAL A 159 SHEET 3 AB2 5 ARG A 274 GLU A 280 -1 O THR A 279 N CYS A 165 SHEET 4 AB2 5 THR A 210 HIS A 215 1 N TRP A 211 O ARG A 274 SHEET 5 AB2 5 LYS A 222 TRP A 223 -1 O LYS A 222 N HIS A 215 SHEET 1 AB3 5 HIS A 188 LEU A 189 0 SHEET 2 AB3 5 ARG A 274 GLU A 280 -1 O GLU A 278 N HIS A 188 SHEET 3 AB3 5 THR A 210 HIS A 215 1 N TRP A 211 O ARG A 274 SHEET 4 AB3 5 CYS A 255 PHE A 258 -1 O ALA A 256 N LEU A 214 SHEET 5 AB3 5 TRP A 264 ASP A 267 -1 O ASP A 267 N CYS A 255 SSBOND 1 CYS H 22 CYS H 96 1555 1555 2.07 SSBOND 2 CYS H 149 CYS H 205 1555 1555 2.03 SSBOND 3 CYS L 23 CYS L 88 1555 1555 2.10 SSBOND 4 CYS L 134 CYS L 194 1555 1555 2.05 SSBOND 5 CYS A 154 CYS A 165 1555 1555 2.05 SSBOND 6 CYS A 182 CYS A 277 1555 1555 2.12 SSBOND 7 CYS A 255 CYS A 269 1555 1555 2.04 LINK O VAL A 191 CA CA A 303 1555 1555 2.30 LINK OE1 GLU A 197 CA CA A 303 1555 1555 2.93 LINK OE2 GLU A 197 CA CA A 303 1555 1555 2.35 LINK OD1 ASP A 216 CA CA A 301 1555 1555 3.00 LINK OD2 ASP A 216 CA CA A 301 1555 1555 2.56 LINK OE1 GLN A 240 CA CA A 302 1555 1555 2.39 LINK OD1 ASP A 242 CA CA A 302 1555 1555 2.44 LINK OD1 ASP A 243 CA CA A 301 1555 1555 2.38 LINK O GLU A 253 CA CA A 301 1555 1555 2.40 LINK OE1 GLU A 253 CA CA A 302 1555 1555 2.38 LINK OD1 ASP A 254 CA CA A 301 1555 1555 2.34 LINK OD1 ASN A 265 CA CA A 302 1555 1555 2.40 LINK O ASP A 266 CA CA A 302 1555 1555 2.46 LINK OD1 ASP A 266 CA CA A 302 1555 1555 2.25 LINK OE1 GLU A 278 CA CA A 303 1555 1555 2.69 LINK OE2 GLU A 278 CA CA A 303 1555 1555 2.38 LINK CA CA A 301 O HOH A 461 1555 1555 2.44 LINK CA CA A 301 O HOH A 466 1555 1555 2.38 LINK CA CA A 301 O HOH A 497 1555 1555 2.55 LINK CA CA A 302 O1 GOL A 304 1555 1555 2.53 LINK CA CA A 302 O2 GOL A 304 1555 1555 2.55 LINK CA CA A 303 O HOH A 441 1555 1555 2.36 LINK CA CA A 303 O HOH A 445 1555 1555 2.42 LINK CA CA A 303 O HOH A 499 1555 1555 2.51 CISPEP 1 PHE H 155 PRO H 156 0 -7.97 CISPEP 2 GLU H 157 PRO H 158 0 -1.53 CISPEP 3 GLU H 157 PRO H 158 0 -0.48 CISPEP 4 SER L 7 PRO L 8 0 -5.23 CISPEP 5 THR L 94 PRO L 95 0 -4.15 CISPEP 6 TYR L 140 PRO L 141 0 3.23 CISPEP 7 GLN A 240 PRO A 241 0 -1.72 CRYST1 38.911 90.316 167.805 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025700 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011072 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005959 0.00000