HEADER RNA 11-AUG-23 8TSV TITLE CRYSTAL STRUCTURE OF THE ZIKA VIRUS STEM-LOOP A (SLA) TOP STEM COMPND MOL_ID: 1; COMPND 2 MOLECULE: ZIKA VIRUS STEM-LOOP A (SLA) TOP STEM; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: A GGGCCC LINKER SEQUENCE IS USED TO CONNECT THE COMPND 6 ANTIPARALLEL STRANDS OF THE TOP STEM SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: ZIKA VIRUS; SOURCE 4 ORGANISM_TAXID: 64320 KEYWDS ZIKA VIRUS, FLAVIVIRUS, RNA STRUCTURE, STEM-LOOP A, RNA EXPDTA X-RAY DIFFRACTION AUTHOR J.TIPO,K.GOTTIPATI,K.H.CHOI REVDAT 2 29-MAY-24 8TSV 1 JRNL REVDAT 1 06-MAR-24 8TSV 0 JRNL AUTH J.TIPO,K.GOTTIPATI,K.H.CHOI JRNL TITL HIGH-RESOLUTION RNA TERTIARY STRUCTURES IN ZIKA VIRUS JRNL TITL 2 STEM-LOOP A FOR THE DEVELOPMENT OF INHIBITORY SMALL JRNL TITL 3 MOLECULES. JRNL REF RNA V. 30 609 2024 JRNL REFN ESSN 1469-9001 JRNL PMID 38383158 JRNL DOI 10.1261/RNA.079796.123 REMARK 2 REMARK 2 RESOLUTION. 1.51 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.51 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.15 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.030 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 3 NUMBER OF REFLECTIONS : 43148 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.156 REMARK 3 R VALUE (WORKING SET) : 0.155 REMARK 3 FREE R VALUE : 0.175 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.620 REMARK 3 FREE R VALUE TEST SET COUNT : 1992 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.1500 - 3.6400 0.98 2978 138 0.1247 0.1277 REMARK 3 2 3.6400 - 2.8900 0.98 3009 150 0.1542 0.1614 REMARK 3 3 2.8900 - 2.5200 0.98 2999 141 0.1833 0.2217 REMARK 3 4 2.5200 - 2.2900 0.98 2985 137 0.1817 0.2026 REMARK 3 5 2.2900 - 2.1300 0.98 2992 148 0.1824 0.1916 REMARK 3 6 2.1300 - 2.0000 0.97 2925 143 0.1678 0.2034 REMARK 3 7 2.0000 - 1.9000 0.97 2990 154 0.1612 0.2050 REMARK 3 8 1.9000 - 1.8200 0.97 2903 131 0.1542 0.1835 REMARK 3 9 1.8200 - 1.7500 0.96 2974 153 0.1468 0.1700 REMARK 3 10 1.7500 - 1.6900 0.96 2909 142 0.1400 0.1706 REMARK 3 11 1.6900 - 1.6400 0.95 2888 146 0.1408 0.1714 REMARK 3 12 1.6400 - 1.5900 0.95 2917 134 0.1431 0.1567 REMARK 3 13 1.5900 - 1.5500 0.95 2880 141 0.1513 0.2097 REMARK 3 14 1.5500 - 1.5100 0.91 2807 134 0.1725 0.2071 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.129 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.503 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.52 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.76 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 2365 REMARK 3 ANGLE : 1.351 3676 REMARK 3 CHIRALITY : 0.058 495 REMARK 3 PLANARITY : 0.015 98 REMARK 3 DIHEDRAL : 10.215 1186 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.9636 -13.0859 4.6338 REMARK 3 T TENSOR REMARK 3 T11: 0.1208 T22: 0.1269 REMARK 3 T33: 0.1195 T12: -0.0022 REMARK 3 T13: 0.0080 T23: 0.0041 REMARK 3 L TENSOR REMARK 3 L11: 0.6007 L22: 0.8854 REMARK 3 L33: 0.4854 L12: -0.3337 REMARK 3 L13: 0.4446 L23: 0.1423 REMARK 3 S TENSOR REMARK 3 S11: 0.0776 S12: -0.1019 S13: -0.0668 REMARK 3 S21: 0.0483 S22: -0.0555 S23: 0.1560 REMARK 3 S31: 0.1020 S32: -0.0499 S33: -0.0209 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 11 THROUGH 15 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.9274 -20.7151 20.5427 REMARK 3 T TENSOR REMARK 3 T11: 0.1891 T22: 0.2959 REMARK 3 T33: 0.1639 T12: -0.0137 REMARK 3 T13: 0.0122 T23: -0.0214 REMARK 3 L TENSOR REMARK 3 L11: 3.6999 L22: 0.4555 REMARK 3 L33: 0.9515 L12: -0.8575 REMARK 3 L13: -0.7284 L23: 0.3161 REMARK 3 S TENSOR REMARK 3 S11: -0.2042 S12: -0.5962 S13: 0.0291 REMARK 3 S21: 0.1426 S22: 0.0874 S23: 0.2125 REMARK 3 S31: 0.2522 S32: -0.2379 S33: 0.0980 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 16 THROUGH 20 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.7800 -25.6522 24.9795 REMARK 3 T TENSOR REMARK 3 T11: 0.2024 T22: 0.3053 REMARK 3 T33: 0.1861 T12: 0.0172 REMARK 3 T13: 0.0409 T23: -0.0043 REMARK 3 L TENSOR REMARK 3 L11: 3.0356 L22: 3.5288 REMARK 3 L33: 2.7180 L12: 0.0624 REMARK 3 L13: 0.8297 L23: -1.0437 REMARK 3 S TENSOR REMARK 3 S11: 0.1217 S12: -0.7120 S13: 0.0371 REMARK 3 S21: 0.3926 S22: 0.0903 S23: 0.4231 REMARK 3 S31: 0.2006 S32: -0.0156 S33: -0.2064 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 21 THROUGH 25 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.2486 -35.6684 39.0691 REMARK 3 T TENSOR REMARK 3 T11: 0.1763 T22: 0.1095 REMARK 3 T33: 0.0981 T12: 0.0021 REMARK 3 T13: -0.0309 T23: -0.0167 REMARK 3 L TENSOR REMARK 3 L11: 0.7519 L22: 2.0057 REMARK 3 L33: 3.4858 L12: -0.8142 REMARK 3 L13: -0.9283 L23: 0.6245 REMARK 3 S TENSOR REMARK 3 S11: 0.1364 S12: 0.0987 S13: -0.0808 REMARK 3 S21: -0.2745 S22: 0.0833 S23: 0.0802 REMARK 3 S31: 0.4006 S32: -0.1049 S33: -0.2254 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.4753 -29.6435 30.8854 REMARK 3 T TENSOR REMARK 3 T11: 0.1878 T22: 0.1796 REMARK 3 T33: 0.1127 T12: 0.0251 REMARK 3 T13: 0.0103 T23: -0.0146 REMARK 3 L TENSOR REMARK 3 L11: 0.5195 L22: 0.2928 REMARK 3 L33: 2.2457 L12: 0.1800 REMARK 3 L13: 1.0991 L23: 0.3589 REMARK 3 S TENSOR REMARK 3 S11: 0.1517 S12: 0.2805 S13: -0.0131 REMARK 3 S21: -0.3154 S22: 0.0779 S23: -0.0441 REMARK 3 S31: 0.0296 S32: 0.4039 S33: -0.1997 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 11 THROUGH 15 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.1766 -17.9486 15.0730 REMARK 3 T TENSOR REMARK 3 T11: 0.1721 T22: 0.2205 REMARK 3 T33: 0.2128 T12: -0.0176 REMARK 3 T13: 0.0109 T23: 0.0032 REMARK 3 L TENSOR REMARK 3 L11: 3.6086 L22: 0.9834 REMARK 3 L33: 0.4199 L12: 1.3798 REMARK 3 L13: 0.8530 L23: 0.4091 REMARK 3 S TENSOR REMARK 3 S11: -0.1480 S12: 0.1488 S13: 0.2709 REMARK 3 S21: -0.2885 S22: 0.1371 S23: -0.1693 REMARK 3 S31: -0.0173 S32: 0.2007 S33: 0.0128 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 16 THROUGH 25 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.3283 -11.8071 2.2577 REMARK 3 T TENSOR REMARK 3 T11: 0.1197 T22: 0.1170 REMARK 3 T33: 0.1333 T12: 0.0006 REMARK 3 T13: -0.0010 T23: -0.0093 REMARK 3 L TENSOR REMARK 3 L11: 0.6394 L22: 1.4969 REMARK 3 L33: 0.0953 L12: 0.0814 REMARK 3 L13: 0.1916 L23: -0.0407 REMARK 3 S TENSOR REMARK 3 S11: 0.0520 S12: 0.0051 S13: 0.0836 REMARK 3 S21: -0.0663 S22: -0.0844 S23: -0.0044 REMARK 3 S31: -0.0246 S32: 0.0262 S33: 0.0383 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 15 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.2584 -7.6701 38.7857 REMARK 3 T TENSOR REMARK 3 T11: 0.1359 T22: 0.1235 REMARK 3 T33: 0.1209 T12: -0.0342 REMARK 3 T13: 0.0121 T23: 0.0085 REMARK 3 L TENSOR REMARK 3 L11: 1.0191 L22: 1.2102 REMARK 3 L33: 0.2538 L12: -0.1799 REMARK 3 L13: 0.5244 L23: -0.2109 REMARK 3 S TENSOR REMARK 3 S11: -0.1579 S12: 0.2358 S13: 0.1449 REMARK 3 S21: -0.2029 S22: 0.0953 S23: -0.0955 REMARK 3 S31: 0.0153 S32: 0.0892 S33: 0.0626 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 16 THROUGH 25 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.4618 5.9391 13.6440 REMARK 3 T TENSOR REMARK 3 T11: 0.1722 T22: 0.2003 REMARK 3 T33: 0.1423 T12: 0.0208 REMARK 3 T13: 0.0112 T23: -0.0152 REMARK 3 L TENSOR REMARK 3 L11: 0.8137 L22: 1.2603 REMARK 3 L33: 3.3407 L12: -0.8666 REMARK 3 L13: -0.6259 L23: 1.1498 REMARK 3 S TENSOR REMARK 3 S11: 0.0455 S12: -0.3188 S13: 0.1768 REMARK 3 S21: 0.1991 S22: 0.2473 S23: -0.0916 REMARK 3 S31: -0.1794 S32: 0.0004 S33: -0.2876 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 1 THROUGH 5 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.8652 1.6591 7.2487 REMARK 3 T TENSOR REMARK 3 T11: 0.1146 T22: 0.1288 REMARK 3 T33: 0.1009 T12: 0.0120 REMARK 3 T13: 0.0123 T23: -0.0159 REMARK 3 L TENSOR REMARK 3 L11: 2.5733 L22: 2.4894 REMARK 3 L33: 2.5196 L12: 0.2743 REMARK 3 L13: 0.2103 L23: -0.1764 REMARK 3 S TENSOR REMARK 3 S11: 0.0133 S12: -0.3298 S13: 0.0261 REMARK 3 S21: 0.2198 S22: 0.1656 S23: 0.0746 REMARK 3 S31: -0.1411 S32: -0.0742 S33: -0.1622 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 6 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.5289 2.8824 24.2996 REMARK 3 T TENSOR REMARK 3 T11: 0.5807 T22: 0.4160 REMARK 3 T33: 0.2624 T12: 0.1818 REMARK 3 T13: 0.0109 T23: 0.0070 REMARK 3 L TENSOR REMARK 3 L11: 1.1022 L22: 3.0722 REMARK 3 L33: 7.5965 L12: 0.6955 REMARK 3 L13: -0.1175 L23: 4.3667 REMARK 3 S TENSOR REMARK 3 S11: -0.2581 S12: -0.0822 S13: 0.0729 REMARK 3 S21: 1.1031 S22: 0.4138 S23: -0.4152 REMARK 3 S31: 1.1321 S32: 1.0003 S33: -0.1622 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 11 THROUGH 15 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.6713 1.8699 29.3942 REMARK 3 T TENSOR REMARK 3 T11: 0.4159 T22: 0.5994 REMARK 3 T33: 0.4481 T12: -0.1083 REMARK 3 T13: -0.0115 T23: 0.1136 REMARK 3 L TENSOR REMARK 3 L11: 2.3459 L22: 3.2880 REMARK 3 L33: 2.2570 L12: -0.4735 REMARK 3 L13: -1.5607 L23: -1.6564 REMARK 3 S TENSOR REMARK 3 S11: 0.2379 S12: -0.8177 S13: 0.2797 REMARK 3 S21: 0.1037 S22: 0.4991 S23: 0.6729 REMARK 3 S31: 0.1118 S32: -0.6058 S33: -0.7290 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 16 THROUGH 25 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.2573 -11.8781 45.5385 REMARK 3 T TENSOR REMARK 3 T11: 0.1159 T22: 0.0947 REMARK 3 T33: 0.1419 T12: -0.0027 REMARK 3 T13: -0.0072 T23: 0.0019 REMARK 3 L TENSOR REMARK 3 L11: 3.1860 L22: 0.6836 REMARK 3 L33: 0.1415 L12: 0.6858 REMARK 3 L13: -0.1163 L23: -0.0290 REMARK 3 S TENSOR REMARK 3 S11: -0.0989 S12: 0.0140 S13: -0.1857 REMARK 3 S21: -0.0424 S22: 0.0443 S23: 0.0221 REMARK 3 S31: 0.0674 S32: 0.0195 S33: 0.0415 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8TSV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-AUG-23. REMARK 100 THE DEPOSITION ID IS D_1000276430. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-DEC-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43189 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.510 REMARK 200 RESOLUTION RANGE LOW (A) : 29.150 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.03400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 39.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.51 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 0.14400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.32 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM ACETATE, MAGNESIUM SULFATE, REMARK 280 LITHIUM SULFATE, ISOPROPANOL, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2690 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2750 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 G B 7 C8 N7 C5 C6 O6 N1 C2 REMARK 470 G B 7 N2 N3 C4 REMARK 470 G D 7 N9 C8 N7 C5 C6 O6 N1 REMARK 470 G D 7 C2 N2 N3 C4 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 121 O HOH B 218 2.03 REMARK 500 O HOH B 212 O HOH B 218 2.07 REMARK 500 O HOH B 132 O HOH B 213 2.14 REMARK 500 N7 G C 12 O HOH C 201 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 A B 2 N1 - C2 - N3 ANGL. DEV. = -3.1 DEGREES REMARK 500 U C 23 C5 - C4 - O4 ANGL. DEV. = -4.3 DEGREES REMARK 500 U C 24 C5 - C6 - N1 ANGL. DEV. = -3.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8TQX RELATED DB: PDB DBREF 8TSV A 1 25 PDB 8TSV 8TSV 1 25 DBREF 8TSV B 1 25 PDB 8TSV 8TSV 1 25 DBREF 8TSV C 1 25 PDB 8TSV 8TSV 1 25 DBREF 8TSV D 1 25 PDB 8TSV 8TSV 1 25 SEQRES 1 A 25 C A G A C U G C G A G G G SEQRES 2 A 25 C C C U C G A G U U U G SEQRES 1 B 25 C A G A C U G C G A G G G SEQRES 2 B 25 C C C U C G A G U U U G SEQRES 1 C 25 C A G A C U G C G A G G G SEQRES 2 C 25 C C C U C G A G U U U G SEQRES 1 D 25 C A G A C U G C G A G G G SEQRES 2 D 25 C C C U C G A G U U U G HET SO4 A 101 5 HET GOL C 101 6 HET GOL D 101 6 HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 SO4 O4 S 2- FORMUL 6 GOL 2(C3 H8 O3) FORMUL 8 HOH *440(H2 O) CRYST1 29.226 52.532 53.670 63.60 88.08 85.94 P 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.034216 -0.002429 -0.000078 0.00000 SCALE2 0.000000 0.019084 -0.009447 0.00000 SCALE3 0.000000 0.000000 0.020802 0.00000