HEADER MOTOR PROTEIN 12-AUG-23 8TT7 TITLE NMR ASSIGNMENTS AND STRUCTURE FOR THE DIMERIC KINESIN NECK DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: KINESIN HEAVY CHAIN ISOFORM 5C; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: NECK DOMAIN, RESIDUES 325-376; COMPND 5 SYNONYM: KINESIN HEAVY CHAIN NEURON-SPECIFIC 2,KINESIN-1; COMPND 6 EC: 3.6.4.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: NORWAY RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: KIF5C, NKHC2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: JM109(DE3); SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PHISTRX2 KEYWDS MICROTUBULE MOTORS, INTRACELLULAR TRANSPORT, MOTOR PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR A.T.ALEXANDRESCU REVDAT 3 15-MAY-24 8TT7 1 REMARK REVDAT 2 15-NOV-23 8TT7 1 JRNL REVDAT 1 01-NOV-23 8TT7 0 JRNL AUTH D.SEO,R.A.KAMMERER,A.T.ALEXANDRESCU JRNL TITL SOLUTION NMR ASSIGNMENTS AND STRUCTURE FOR THE DIMERIC JRNL TITL 2 KINESIN NECK DOMAIN. JRNL REF BIOMOL.NMR ASSIGN. V. 17 301 2023 JRNL REFN ESSN 1874-270X JRNL PMID 37861970 JRNL DOI 10.1007/S12104-023-10159-X REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: SA.INP SCRIPT OF X-PLOR NIH TUTORIAL REMARK 3 FOLLOWED BY 3 CYCLES OF REFINE.INP (FROM X-PLOR NIH). STRUCTURES REMARK 3 WITH NO VIOLATIONS SELECTED FOR NEXT ROUND. MULTIPLE CYCLES OF REMARK 3 PROT_SA_REFINE.INP FROM THIS SITE (HTTPS:// REMARK 3 NESGWIKI.CHEM.BUFFALO.EDU/INDEX.PHP/STRUCTURE_REFINEMENT_USING_ REMARK 3 XPLOR-NIH) UNTIL NO VIOLATIONS. STRUCTURES HAVE NO DIFFERENCES REMARK 3 THE HUMAN EYE CAN SEE BUT HAVE BETTER PDB QUALITY BARS. REMARK 4 REMARK 4 8TT7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-AUG-23. REMARK 100 THE DEPOSITION ID IS D_1000276591. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 310; 310; 310; 296 REMARK 210 PH : 6.1; 6.1; 6.1; 6.1 REMARK 210 IONIC STRENGTH : 150; 150; 150; 150 REMARK 210 PRESSURE : 1 ATM; 1 ATM; 1 ATM; 1 ATM REMARK 210 SAMPLE CONTENTS : 0.75 MM [U-13C; U-15N] REMARK 210 KINESIN_NECK, 90% H2O/10% D2O; REMARK 210 0.75 MM [U-13C; U-15N] KINESIN_ REMARK 210 NECK, 100% D2O; 0.75 MM [U-15N] REMARK 210 KINESIN_NECK, 90% H2O/10% D2O; REMARK 210 0.75 MM [U-15N] KINESIN_NECK, REMARK 210 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCACB; 3D REMARK 210 HN(CO)CA; 3D 1H-15N TOCSY; 3D 1H- REMARK 210 15N NOESY; 2D 1H-13C HSQC; 3D REMARK 210 HCACO; 3D HCCH-TOCSY; 3D 1H-13C REMARK 210 NOESY; HYDROGEN EXCHANGE N-HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 500 MHZ REMARK 210 SPECTROMETER MODEL : INOVA; AVANCE NEO REMARK 210 SPECTROMETER MANUFACTURER : VARIAN; BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : IN-HOUSE / CUSTOM, NMRPIPE, REMARK 210 FELIX, X-PLOR NIH, CCPNMR REMARK 210 ANALYSIS, VNMRJ, TOPSPIN REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 6 125.64 54.44 REMARK 500 1 LEU A 13 -102.75 -76.18 REMARK 500 1 LYS B 6 125.53 54.50 REMARK 500 1 LEU B 13 -102.82 -76.14 REMARK 500 2 THR A 4 108.57 69.98 REMARK 500 2 ASN A 12 -101.12 37.43 REMARK 500 2 LEU A 13 -105.44 96.21 REMARK 500 2 GLU A 14 144.14 -39.63 REMARK 500 2 GLU A 52 -79.38 -70.27 REMARK 500 2 THR B 4 108.69 69.89 REMARK 500 2 ASN B 12 -101.14 37.38 REMARK 500 2 LEU B 13 -105.34 96.26 REMARK 500 2 GLU B 14 144.01 -39.66 REMARK 500 2 GLU B 52 -79.32 -70.34 REMARK 500 3 LYS A 3 78.75 -174.21 REMARK 500 3 LYS B 3 78.82 -174.11 REMARK 500 4 THR A 4 14.40 56.12 REMARK 500 4 GLU A 14 98.26 -66.96 REMARK 500 4 GLU A 52 61.71 69.26 REMARK 500 4 THR B 4 14.33 56.21 REMARK 500 4 GLU B 14 98.31 -66.96 REMARK 500 4 GLU B 52 61.76 69.18 REMARK 500 5 LYS A 3 -170.51 39.39 REMARK 500 5 LEU A 13 -147.46 66.07 REMARK 500 5 LYS B 3 -170.54 39.46 REMARK 500 5 LEU B 13 -147.41 65.95 REMARK 500 6 LEU A 13 -71.68 -127.06 REMARK 500 6 THR A 16 -162.93 -111.65 REMARK 500 6 GLU A 52 -146.40 -156.07 REMARK 500 6 LEU B 13 -71.68 -127.13 REMARK 500 6 THR B 16 -162.78 -111.86 REMARK 500 6 GLU B 52 -146.37 -156.06 REMARK 500 7 ASN A 12 96.33 58.85 REMARK 500 7 LEU A 13 -163.57 -104.25 REMARK 500 7 GLU A 52 -101.56 150.53 REMARK 500 7 ASN B 12 96.35 58.76 REMARK 500 7 LEU B 13 -163.53 -104.22 REMARK 500 7 GLU B 52 -101.43 150.63 REMARK 500 8 LEU A 13 79.48 26.19 REMARK 500 8 GLU A 14 89.80 -61.17 REMARK 500 8 GLU A 52 70.17 63.47 REMARK 500 8 LEU B 13 79.51 26.18 REMARK 500 8 GLU B 14 89.41 -60.78 REMARK 500 8 GLU B 52 70.21 63.41 REMARK 500 9 ASN A 12 73.71 -67.96 REMARK 500 9 LEU A 13 117.52 50.58 REMARK 500 9 ASN B 12 73.67 -67.88 REMARK 500 9 LEU B 13 117.48 50.47 REMARK 500 10 LYS A 3 -89.11 -92.42 REMARK 500 10 LEU A 13 168.59 -40.20 REMARK 500 REMARK 500 THIS ENTRY HAS 112 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 52075 RELATED DB: BMRB DBREF 8TT7 A 3 54 UNP P56536 KIF5C_RAT 325 376 DBREF 8TT7 B 3 54 UNP P56536 KIF5C_RAT 325 376 SEQADV 8TT7 GLY A 1 UNP P56536 EXPRESSION TAG SEQADV 8TT7 SER A 2 UNP P56536 EXPRESSION TAG SEQADV 8TT7 GLY B 1 UNP P56536 EXPRESSION TAG SEQADV 8TT7 SER B 2 UNP P56536 EXPRESSION TAG SEQRES 1 A 54 GLY SER LYS THR ILE LYS ASN THR VAL SER VAL ASN LEU SEQRES 2 A 54 GLU LEU THR ALA GLU GLU TRP LYS LYS LYS TYR GLU LYS SEQRES 3 A 54 GLU LYS GLU LYS ASN LYS ALA LEU LYS SER VAL ILE GLN SEQRES 4 A 54 HIS LEU GLU VAL GLU LEU ASN ARG TRP ARG ASN GLY GLU SEQRES 5 A 54 ALA VAL SEQRES 1 B 54 GLY SER LYS THR ILE LYS ASN THR VAL SER VAL ASN LEU SEQRES 2 B 54 GLU LEU THR ALA GLU GLU TRP LYS LYS LYS TYR GLU LYS SEQRES 3 B 54 GLU LYS GLU LYS ASN LYS ALA LEU LYS SER VAL ILE GLN SEQRES 4 B 54 HIS LEU GLU VAL GLU LEU ASN ARG TRP ARG ASN GLY GLU SEQRES 5 B 54 ALA VAL HELIX 1 AA1 THR A 16 ASN A 50 1 35 HELIX 2 AA2 THR B 16 ASN B 50 1 35 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1