HEADER PROTEIN TRANSPORT 13-AUG-23 8TTC TITLE STRUCTURE OF RETROMER VPS29-VPS35 (483-796) COMPLEXED WITH FAM21A TITLE 2 REPEAT 20 (1289-1302) COMPND MOL_ID: 1; COMPND 2 MOLECULE: VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 29; COMPND 3 CHAIN: A, C; COMPND 4 SYNONYM: VESICLE PROTEIN SORTING 29; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 35; COMPND 8 CHAIN: B, D; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: SER-ILE-PHE-ASP-ASP-ASP-MET-ASP-ASP-ILE-PHE-SER-SER-GLY; COMPND 12 CHAIN: E; COMPND 13 SYNONYM: WASH COMPLEX SUBUNIT 2A; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: VPS29; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 10 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 11 ORGANISM_TAXID: 10090; SOURCE 12 GENE: VPS35; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 18 ORGANISM_COMMON: HUMAN; SOURCE 19 ORGANISM_TAXID: 9606 KEYWDS VPS29, VPS35, FAM21, RETROMER, WASH COMPLEX, ENDOSOME, PROTEIN KEYWDS 2 TRANSPORT, ENDOCYTOSIS EXPDTA X-RAY DIFFRACTION AUTHOR K.-E.CHEN,Q.GUO,B.M.COLLINS REVDAT 1 21-AUG-24 8TTC 0 JRNL AUTH Q.GUO,K.E.CHEN,M.GIMENEZ-ANDRES,A.P.JELLETT,Y.GAO, JRNL AUTH 2 B.SIMONETTI,M.LIU,C.M.DANSON,K.J.HEESOM,P.J.CULLEN, JRNL AUTH 3 B.M.COLLINS JRNL TITL STRUCTURAL BASIS FOR COUPLING OF THE WASH SUBUNIT FAM21 WITH JRNL TITL 2 THE ENDOSOMAL SNX27-RETROMER COMPLEX. JRNL REF PROC.NATL.ACAD.SCI.USA V. 121 41121 2024 JRNL REFN ESSN 1091-6490 JRNL PMID 39116126 JRNL DOI 10.1073/PNAS.2405041121 REMARK 2 REMARK 2 RESOLUTION. 3.01 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.19.2_4158: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.01 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.58 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 26912 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.239 REMARK 3 R VALUE (WORKING SET) : 0.238 REMARK 3 FREE R VALUE : 0.271 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 1343 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.5800 - 6.4900 1.00 2801 155 0.2139 0.2417 REMARK 3 2 6.4800 - 5.1500 1.00 2614 144 0.2436 0.2465 REMARK 3 3 5.1500 - 4.5000 1.00 2579 129 0.2058 0.2316 REMARK 3 4 4.5000 - 4.0900 1.00 2560 149 0.2129 0.2655 REMARK 3 5 4.0900 - 3.8000 1.00 2539 133 0.2394 0.2829 REMARK 3 6 3.7900 - 3.5700 1.00 2519 129 0.2568 0.2793 REMARK 3 7 3.5700 - 3.3900 1.00 2531 104 0.2653 0.3736 REMARK 3 8 3.3900 - 3.2500 1.00 2536 136 0.2978 0.3700 REMARK 3 9 3.2400 - 3.1200 1.00 2493 128 0.3461 0.3612 REMARK 3 10 3.1200 - 3.0100 0.96 2397 136 0.3412 0.3684 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.450 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.430 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 7939 REMARK 3 ANGLE : 1.082 10709 REMARK 3 CHIRALITY : 0.060 1183 REMARK 3 PLANARITY : 0.007 1384 REMARK 3 DIHEDRAL : 4.731 1044 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 1.5377 -27.7225 -43.1348 REMARK 3 T TENSOR REMARK 3 T11: 0.4540 T22: 1.0536 REMARK 3 T33: 0.6335 T12: 0.0660 REMARK 3 T13: 0.0036 T23: 0.0149 REMARK 3 L TENSOR REMARK 3 L11: -0.3308 L22: 1.0034 REMARK 3 L33: 1.7213 L12: 0.2190 REMARK 3 L13: -0.3207 L23: -0.1173 REMARK 3 S TENSOR REMARK 3 S11: 0.0906 S12: 0.0611 S13: -0.0125 REMARK 3 S21: 0.1034 S22: -0.2619 S23: -0.0140 REMARK 3 S31: -0.0581 S32: -0.0135 S33: 0.1472 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8TTC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-AUG-23. REMARK 100 THE DEPOSITION ID IS D_1000276599. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-JUN-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95365 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27047 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.010 REMARK 200 RESOLUTION RANGE LOW (A) : 46.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 12.90 REMARK 200 R MERGE (I) : 0.13700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.01 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.20 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 13.10 REMARK 200 R MERGE FOR SHELL (I) : 1.58800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: ROD SHAPE CRYSTAL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.81 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM CITRATE PH 4.2, 0.2 M REMARK 280 NACL 16% PEG1000, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 164.14550 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 44.38150 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 44.38150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 246.21825 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 44.38150 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 44.38150 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 82.07275 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 44.38150 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 44.38150 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 246.21825 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 44.38150 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 44.38150 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 82.07275 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 164.14550 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B 481 REMARK 465 SER B 482 REMARK 465 ASP B 483 REMARK 465 PHE B 484 REMARK 465 ALA B 485 REMARK 465 ASP B 486 REMARK 465 GLU B 487 REMARK 465 GLN B 488 REMARK 465 SER B 489 REMARK 465 SER B 786 REMARK 465 GLU B 787 REMARK 465 GLY B 788 REMARK 465 PRO B 789 REMARK 465 ILE B 790 REMARK 465 TYR B 791 REMARK 465 GLU B 792 REMARK 465 GLY B 793 REMARK 465 LEU B 794 REMARK 465 ILE B 795 REMARK 465 LEU B 796 REMARK 465 MET C 1 REMARK 465 GLY D 481 REMARK 465 SER D 482 REMARK 465 ASP D 483 REMARK 465 PHE D 484 REMARK 465 ALA D 485 REMARK 465 ASP D 486 REMARK 465 GLU D 487 REMARK 465 GLU D 787 REMARK 465 GLY D 788 REMARK 465 PRO D 789 REMARK 465 ILE D 790 REMARK 465 TYR D 791 REMARK 465 GLU D 792 REMARK 465 GLY D 793 REMARK 465 LEU D 794 REMARK 465 ILE D 795 REMARK 465 LEU D 796 REMARK 465 SER E 1289 REMARK 465 ILE E 1290 REMARK 465 PHE E 1291 REMARK 465 ASP E 1292 REMARK 465 ASP E 1293 REMARK 465 ASP E 1294 REMARK 465 MET E 1295 REMARK 465 SER E 1300 REMARK 465 SER E 1301 REMARK 465 GLY E 1302 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 MET A 1 CB CG SD CE REMARK 480 MET B 549 CG SD CE REMARK 480 GLU B 597 CD OE1 OE2 REMARK 480 ARG D 499 CD NE CZ NH1 NH2 REMARK 480 ARG D 526 CD NE CZ NH1 NH2 REMARK 480 GLU D 545 CD OE1 OE2 REMARK 480 GLU D 575 CD OE1 OE2 REMARK 480 LYS D 659 CG CD CE NZ REMARK 480 LEU D 661 CG CD1 CD2 REMARK 480 ASP D 736 CG OD1 OD2 REMARK 480 HIS D 771 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O SER B 714 CG2 VAL B 717 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 41 -106.71 58.14 REMARK 500 PHE A 80 129.68 65.34 REMARK 500 HIS A 115 -2.08 65.20 REMARK 500 ALA A 157 -114.22 -160.05 REMARK 500 PHE B 494 -74.32 -78.09 REMARK 500 ILE B 495 21.30 16.22 REMARK 500 HIS B 496 20.53 -77.89 REMARK 500 LEU B 498 -98.01 49.63 REMARK 500 ARG B 499 -88.16 22.78 REMARK 500 SER B 500 144.14 -15.23 REMARK 500 ASP B 502 103.66 92.59 REMARK 500 ASN B 546 44.52 -103.12 REMARK 500 ALA B 577 -53.62 -128.00 REMARK 500 LEU B 661 -71.99 -59.24 REMARK 500 TRP B 678 -65.03 -125.07 REMARK 500 MET B 711 19.89 54.69 REMARK 500 ASN B 756 26.22 -73.39 REMARK 500 SER B 783 108.50 -168.28 REMARK 500 CYS C 41 -101.67 57.22 REMARK 500 ASP C 55 73.83 46.98 REMARK 500 LEU C 67 -56.31 60.35 REMARK 500 HIS C 115 -5.19 64.79 REMARK 500 GLU C 125 39.47 80.17 REMARK 500 ARG D 493 46.59 -95.77 REMARK 500 ILE D 495 91.60 -40.61 REMARK 500 HIS D 496 19.18 -57.13 REMARK 500 LEU D 497 -13.43 -46.99 REMARK 500 ASP D 502 102.74 92.54 REMARK 500 ASN D 522 -60.37 11.35 REMARK 500 ASN D 546 39.19 -99.39 REMARK 500 MET D 711 14.34 58.18 REMARK 500 ASN D 756 23.66 -75.04 REMARK 500 ARG D 780 80.06 53.65 REMARK 500 GLU D 782 -59.25 72.78 REMARK 500 GLU D 785 -130.23 -155.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH D 910 DISTANCE = 6.28 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8TTA RELATED DB: PDB REMARK 900 8TTA DBREF 8TTC A 1 182 UNP Q9QZ88 VPS29_MOUSE 1 182 DBREF 8TTC B 483 796 UNP Q9EQH3 VPS35_MOUSE 483 796 DBREF 8TTC C 1 182 UNP Q9QZ88 VPS29_MOUSE 1 182 DBREF 8TTC D 483 796 UNP Q9EQH3 VPS35_MOUSE 483 796 DBREF 8TTC E 1289 1302 UNP Q641Q2 WAC2A_HUMAN 1289 1302 SEQADV 8TTC GLY B 481 UNP Q9EQH3 EXPRESSION TAG SEQADV 8TTC SER B 482 UNP Q9EQH3 EXPRESSION TAG SEQADV 8TTC GLY D 481 UNP Q9EQH3 EXPRESSION TAG SEQADV 8TTC SER D 482 UNP Q9EQH3 EXPRESSION TAG SEQRES 1 A 182 MET LEU VAL LEU VAL LEU GLY ASP LEU HIS ILE PRO HIS SEQRES 2 A 182 ARG CYS ASN SER LEU PRO ALA LYS PHE LYS LYS LEU LEU SEQRES 3 A 182 VAL PRO GLY LYS ILE GLN HIS ILE LEU CYS THR GLY ASN SEQRES 4 A 182 LEU CYS THR LYS GLU SER TYR ASP TYR LEU LYS THR LEU SEQRES 5 A 182 ALA GLY ASP VAL HIS ILE VAL ARG GLY ASP PHE ASP GLU SEQRES 6 A 182 ASN LEU ASN TYR PRO GLU GLN LYS VAL VAL THR VAL GLY SEQRES 7 A 182 GLN PHE LYS ILE GLY LEU ILE HIS GLY HIS GLN VAL ILE SEQRES 8 A 182 PRO TRP GLY ASP MET ALA SER LEU ALA LEU LEU GLN ARG SEQRES 9 A 182 GLN PHE ASP VAL ASP ILE LEU ILE SER GLY HIS THR HIS SEQRES 10 A 182 LYS PHE GLU ALA PHE GLU HIS GLU ASN LYS PHE TYR ILE SEQRES 11 A 182 ASN PRO GLY SER ALA THR GLY ALA TYR ASN ALA LEU GLU SEQRES 12 A 182 THR ASN ILE ILE PRO SER PHE VAL LEU MET ASP ILE GLN SEQRES 13 A 182 ALA SER THR VAL VAL THR TYR VAL TYR GLN LEU ILE GLY SEQRES 14 A 182 ASP ASP VAL LYS VAL GLU ARG ILE GLU TYR LYS LYS SER SEQRES 1 B 316 GLY SER ASP PHE ALA ASP GLU GLN SER LEU VAL GLY ARG SEQRES 2 B 316 PHE ILE HIS LEU LEU ARG SER ASP ASP PRO ASP GLN GLN SEQRES 3 B 316 TYR LEU ILE LEU ASN THR ALA ARG LYS HIS PHE GLY ALA SEQRES 4 B 316 GLY GLY ASN GLN ARG ILE ARG PHE THR LEU PRO PRO LEU SEQRES 5 B 316 VAL PHE ALA ALA TYR GLN LEU ALA PHE ARG TYR LYS GLU SEQRES 6 B 316 ASN SER GLN MET ASP ASP LYS TRP GLU LYS LYS CYS GLN SEQRES 7 B 316 LYS ILE PHE SER PHE ALA HIS GLN THR ILE SER ALA LEU SEQRES 8 B 316 ILE LYS ALA GLU LEU ALA GLU LEU PRO LEU ARG LEU PHE SEQRES 9 B 316 LEU GLN GLY ALA LEU ALA ALA GLY GLU ILE GLY PHE GLU SEQRES 10 B 316 ASN HIS GLU THR VAL ALA TYR GLU PHE MET SER GLN ALA SEQRES 11 B 316 PHE SER LEU TYR GLU ASP GLU ILE SER ASP SER LYS ALA SEQRES 12 B 316 GLN LEU ALA ALA ILE THR LEU ILE ILE GLY THR PHE GLU SEQRES 13 B 316 ARG MET LYS CYS PHE SER GLU GLU ASN HIS GLU PRO LEU SEQRES 14 B 316 ARG THR GLN CYS ALA LEU ALA ALA SER LYS LEU LEU LYS SEQRES 15 B 316 LYS PRO ASP GLN GLY ARG ALA VAL SER THR CYS ALA HIS SEQRES 16 B 316 LEU PHE TRP SER GLY ARG ASN THR ASP LYS ASN GLY GLU SEQRES 17 B 316 GLU LEU HIS GLY GLY LYS ARG VAL MET GLU CYS LEU LYS SEQRES 18 B 316 LYS ALA LEU LYS ILE ALA ASN GLN CYS MET ASP PRO SER SEQRES 19 B 316 LEU GLN VAL GLN LEU PHE ILE GLU ILE LEU ASN ARG TYR SEQRES 20 B 316 ILE TYR PHE TYR GLU LYS GLU ASN ASP ALA VAL THR ILE SEQRES 21 B 316 GLN VAL LEU ASN GLN LEU ILE GLN LYS ILE ARG GLU ASP SEQRES 22 B 316 LEU PRO ASN LEU GLU SER SER GLU GLU THR GLU GLN ILE SEQRES 23 B 316 ASN LYS HIS PHE HIS ASN THR LEU GLU HIS LEU ARG SER SEQRES 24 B 316 ARG ARG GLU SER PRO GLU SER GLU GLY PRO ILE TYR GLU SEQRES 25 B 316 GLY LEU ILE LEU SEQRES 1 C 182 MET LEU VAL LEU VAL LEU GLY ASP LEU HIS ILE PRO HIS SEQRES 2 C 182 ARG CYS ASN SER LEU PRO ALA LYS PHE LYS LYS LEU LEU SEQRES 3 C 182 VAL PRO GLY LYS ILE GLN HIS ILE LEU CYS THR GLY ASN SEQRES 4 C 182 LEU CYS THR LYS GLU SER TYR ASP TYR LEU LYS THR LEU SEQRES 5 C 182 ALA GLY ASP VAL HIS ILE VAL ARG GLY ASP PHE ASP GLU SEQRES 6 C 182 ASN LEU ASN TYR PRO GLU GLN LYS VAL VAL THR VAL GLY SEQRES 7 C 182 GLN PHE LYS ILE GLY LEU ILE HIS GLY HIS GLN VAL ILE SEQRES 8 C 182 PRO TRP GLY ASP MET ALA SER LEU ALA LEU LEU GLN ARG SEQRES 9 C 182 GLN PHE ASP VAL ASP ILE LEU ILE SER GLY HIS THR HIS SEQRES 10 C 182 LYS PHE GLU ALA PHE GLU HIS GLU ASN LYS PHE TYR ILE SEQRES 11 C 182 ASN PRO GLY SER ALA THR GLY ALA TYR ASN ALA LEU GLU SEQRES 12 C 182 THR ASN ILE ILE PRO SER PHE VAL LEU MET ASP ILE GLN SEQRES 13 C 182 ALA SER THR VAL VAL THR TYR VAL TYR GLN LEU ILE GLY SEQRES 14 C 182 ASP ASP VAL LYS VAL GLU ARG ILE GLU TYR LYS LYS SER SEQRES 1 D 316 GLY SER ASP PHE ALA ASP GLU GLN SER LEU VAL GLY ARG SEQRES 2 D 316 PHE ILE HIS LEU LEU ARG SER ASP ASP PRO ASP GLN GLN SEQRES 3 D 316 TYR LEU ILE LEU ASN THR ALA ARG LYS HIS PHE GLY ALA SEQRES 4 D 316 GLY GLY ASN GLN ARG ILE ARG PHE THR LEU PRO PRO LEU SEQRES 5 D 316 VAL PHE ALA ALA TYR GLN LEU ALA PHE ARG TYR LYS GLU SEQRES 6 D 316 ASN SER GLN MET ASP ASP LYS TRP GLU LYS LYS CYS GLN SEQRES 7 D 316 LYS ILE PHE SER PHE ALA HIS GLN THR ILE SER ALA LEU SEQRES 8 D 316 ILE LYS ALA GLU LEU ALA GLU LEU PRO LEU ARG LEU PHE SEQRES 9 D 316 LEU GLN GLY ALA LEU ALA ALA GLY GLU ILE GLY PHE GLU SEQRES 10 D 316 ASN HIS GLU THR VAL ALA TYR GLU PHE MET SER GLN ALA SEQRES 11 D 316 PHE SER LEU TYR GLU ASP GLU ILE SER ASP SER LYS ALA SEQRES 12 D 316 GLN LEU ALA ALA ILE THR LEU ILE ILE GLY THR PHE GLU SEQRES 13 D 316 ARG MET LYS CYS PHE SER GLU GLU ASN HIS GLU PRO LEU SEQRES 14 D 316 ARG THR GLN CYS ALA LEU ALA ALA SER LYS LEU LEU LYS SEQRES 15 D 316 LYS PRO ASP GLN GLY ARG ALA VAL SER THR CYS ALA HIS SEQRES 16 D 316 LEU PHE TRP SER GLY ARG ASN THR ASP LYS ASN GLY GLU SEQRES 17 D 316 GLU LEU HIS GLY GLY LYS ARG VAL MET GLU CYS LEU LYS SEQRES 18 D 316 LYS ALA LEU LYS ILE ALA ASN GLN CYS MET ASP PRO SER SEQRES 19 D 316 LEU GLN VAL GLN LEU PHE ILE GLU ILE LEU ASN ARG TYR SEQRES 20 D 316 ILE TYR PHE TYR GLU LYS GLU ASN ASP ALA VAL THR ILE SEQRES 21 D 316 GLN VAL LEU ASN GLN LEU ILE GLN LYS ILE ARG GLU ASP SEQRES 22 D 316 LEU PRO ASN LEU GLU SER SER GLU GLU THR GLU GLN ILE SEQRES 23 D 316 ASN LYS HIS PHE HIS ASN THR LEU GLU HIS LEU ARG SER SEQRES 24 D 316 ARG ARG GLU SER PRO GLU SER GLU GLY PRO ILE TYR GLU SEQRES 25 D 316 GLY LEU ILE LEU SEQRES 1 E 14 SER ILE PHE ASP ASP ASP MET ASP ASP ILE PHE SER SER SEQRES 2 E 14 GLY HET CIT A 201 13 HET PEG B 801 7 HET GOL B 802 6 HET CIT B 803 13 HET ACT D 801 4 HETNAM CIT CITRIC ACID HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM GOL GLYCEROL HETNAM ACT ACETATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 6 CIT 2(C6 H8 O7) FORMUL 7 PEG C4 H10 O3 FORMUL 8 GOL C3 H8 O3 FORMUL 10 ACT C2 H3 O2 1- FORMUL 11 HOH *17(H2 O) HELIX 1 AA1 PRO A 19 LEU A 26 1 8 HELIX 2 AA2 THR A 42 ALA A 53 1 12 HELIX 3 AA3 ASP A 95 ASP A 107 1 13 HELIX 4 AA4 ASP B 502 ALA B 519 1 18 HELIX 5 AA5 GLY B 520 ASN B 546 1 27 HELIX 6 AA6 LYS B 552 ALA B 574 1 23 HELIX 7 AA7 ALA B 577 GLY B 595 1 19 HELIX 8 AA8 ASN B 598 ILE B 618 1 21 HELIX 9 AA9 ASP B 620 MET B 638 1 19 HELIX 10 AB1 SER B 642 LYS B 659 1 18 HELIX 11 AB2 LYS B 662 ALA B 674 1 13 HELIX 12 AB3 HIS B 675 GLY B 680 1 6 HELIX 13 AB4 ASN B 682 ASN B 686 5 5 HELIX 14 AB5 GLY B 692 GLN B 709 1 18 HELIX 15 AB6 ASP B 712 LYS B 733 1 22 HELIX 16 AB7 THR B 739 LEU B 754 1 16 HELIX 17 AB8 PRO B 755 LEU B 757 5 3 HELIX 18 AB9 SER B 760 SER B 779 1 20 HELIX 19 AC1 PRO C 19 LEU C 26 1 8 HELIX 20 AC2 THR C 42 ALA C 53 1 12 HELIX 21 AC3 ASP C 95 ASP C 107 1 13 HELIX 22 AC4 HIS D 496 SER D 500 5 5 HELIX 23 AC5 ASP D 502 ALA D 519 1 18 HELIX 24 AC6 ARG D 524 ASN D 546 1 23 HELIX 25 AC7 LYS D 552 LYS D 573 1 22 HELIX 26 AC8 ALA D 577 GLY D 595 1 19 HELIX 27 AC9 ASN D 598 ILE D 618 1 21 HELIX 28 AD1 ASP D 620 MET D 638 1 19 HELIX 29 AD2 SER D 642 LYS D 659 1 18 HELIX 30 AD3 LYS D 662 CYS D 673 1 12 HELIX 31 AD4 CYS D 673 SER D 679 1 7 HELIX 32 AD5 ASN D 682 ASN D 686 5 5 HELIX 33 AD6 GLY D 692 GLN D 709 1 18 HELIX 34 AD7 ASP D 712 GLU D 732 1 21 HELIX 35 AD8 THR D 739 LEU D 754 1 16 HELIX 36 AD9 SER D 760 SER D 779 1 20 SHEET 1 AA1 6 ASP A 55 ILE A 58 0 SHEET 2 AA1 6 HIS A 33 CYS A 36 1 N CYS A 36 O HIS A 57 SHEET 3 AA1 6 LEU A 2 LEU A 6 1 N LEU A 4 O LEU A 35 SHEET 4 AA1 6 SER A 149 ILE A 155 -1 O VAL A 151 N VAL A 5 SHEET 5 AA1 6 THR A 159 ILE A 168 -1 O TYR A 163 N LEU A 152 SHEET 6 AA1 6 ASP A 171 LYS A 180 -1 O TYR A 179 N VAL A 160 SHEET 1 AA2 5 GLN A 72 THR A 76 0 SHEET 2 AA2 5 LYS A 81 ILE A 85 -1 O ILE A 82 N VAL A 75 SHEET 3 AA2 5 ILE A 110 ILE A 112 1 O ILE A 112 N GLY A 83 SHEET 4 AA2 5 LYS A 127 ASN A 131 1 O ILE A 130 N LEU A 111 SHEET 5 AA2 5 GLU A 120 HIS A 124 -1 N PHE A 122 O TYR A 129 SHEET 1 AA3 6 VAL C 56 ILE C 58 0 SHEET 2 AA3 6 HIS C 33 CYS C 36 1 N ILE C 34 O HIS C 57 SHEET 3 AA3 6 VAL C 3 LEU C 6 1 N LEU C 4 O LEU C 35 SHEET 4 AA3 6 SER C 149 ILE C 155 -1 O MET C 153 N VAL C 3 SHEET 5 AA3 6 THR C 159 ILE C 168 -1 O TYR C 165 N PHE C 150 SHEET 6 AA3 6 ASP C 171 LYS C 180 -1 O GLU C 175 N VAL C 164 SHEET 1 AA4 5 GLN C 72 VAL C 77 0 SHEET 2 AA4 5 PHE C 80 ILE C 85 -1 O ILE C 82 N VAL C 75 SHEET 3 AA4 5 ILE C 110 ILE C 112 1 O ILE C 112 N GLY C 83 SHEET 4 AA4 5 LYS C 127 ASN C 131 1 O ILE C 130 N LEU C 111 SHEET 5 AA4 5 GLU C 120 HIS C 124 -1 N PHE C 122 O TYR C 129 CISPEP 1 ILE A 11 PRO A 12 0 0.96 CISPEP 2 ILE A 91 PRO A 92 0 -9.80 CISPEP 3 ILE C 11 PRO C 12 0 -0.34 CISPEP 4 ILE C 91 PRO C 92 0 -11.42 CRYST1 88.763 88.763 328.291 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011266 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011266 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003046 0.00000