HEADER SIGNALING PROTEIN/IMMUNE SYSTEM 17-AUG-23 8TV1 TITLE STRUCTURE OF THE EPHA2 LBDCRD BOUND TO FABS1C_L1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: S1C VARIANT OF FAB_L1 HEAVY CHAIN; COMPND 3 CHAIN: D; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: FAB PRODUCED BY RANDOMIZATION OF CDR REGIONS AND COMPND 6 SELECTED BY PHAGE DISPLAY. FABS UTILIZE IMGT (LECLERC ET AL., DEV COMPND 7 COMP IMMUNOL. 2003 JAN;27(1):55-77) NUMBERING.; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: S1C VARIANT OF FAB_L1 LIGHT CHAIN; COMPND 10 CHAIN: E; COMPND 11 ENGINEERED: YES; COMPND 12 MUTATION: YES; COMPND 13 OTHER_DETAILS: FAB PRODUCED BY RANDOMIZATION OF CDR REGIONS AND COMPND 14 SELECTED BY PHAGE DISPLAY. FABS UTILIZE IMGT (LECLERC ET AL., DEV COMPND 15 COMP IMMUNOL. 2003 JAN;27(1):55-77) NUMBERING.; COMPND 16 MOL_ID: 3; COMPND 17 MOLECULE: EPHRIN TYPE-A RECEPTOR 2; COMPND 18 CHAIN: C; COMPND 19 SYNONYM: EPITHELIAL CELL KINASE,TYROSINE-PROTEIN KINASE RECEPTOR ECK; COMPND 20 EC: 2.7.10.1; COMPND 21 ENGINEERED: YES; COMPND 22 OTHER_DETAILS: EXPRESSED WITH A C-TERMINAL THROMBIN CLEAVAGE SITE AND COMPND 23 6-HIS SEQUENCE. THE RESIDUES LTPR AT THE C-TERMINUS ARE DERIVED FROM COMPND 24 THE THROMBIN CLEAVAGE SITE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: EXPI293; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PSCSTA; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 16 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 18 EXPRESSION_SYSTEM_CELL_LINE: EXPI293; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PSCSTA; SOURCE 21 MOL_ID: 3; SOURCE 22 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 23 ORGANISM_COMMON: HUMAN; SOURCE 24 ORGANISM_TAXID: 9606; SOURCE 25 GENE: EPHA2, ECK; SOURCE 26 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 27 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 28 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 29 EXPRESSION_SYSTEM_CELL_LINE: EXPI293; SOURCE 30 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 31 EXPRESSION_SYSTEM_PLASMID: PSCSTA KEYWDS CELL SIGNALLING, ANTIBODY, AGONIST, HIGH AFFINITY, CLUSTERING, KEYWDS 2 ACTIVATION, SIGNALING PROTEIN-IMMUNE SYSTEM COMPLEX, SIGNALING KEYWDS 3 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.U.SINGER,H.A.BRUCE,L.BLAZER,J.J.ADAMS,F.SICHERI,S.S.SIDHU REVDAT 1 26-JUN-24 8TV1 0 JRNL AUTH J.J.ADAMS,H.A.BRUCE,L.PLODER,J.GARCIA,G.KHUTORESKAYA, JRNL AUTH 2 N.JARVIK,L.E.COSTA,M.GORELIK,I.POT,F.SICHERI,L.L.BLAZER, JRNL AUTH 3 A.U.SINGER,S.S.SIDHU JRNL TITL SYNTHETIC ANTIBODIES TARGETING EPHA2 INDUCE DIVERSE JRNL TITL 2 SIGNALING-COMPETENT CLUSTERS WITH DIFFERENTIAL ACTIVATION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 62.20 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.1 REMARK 3 NUMBER OF REFLECTIONS : 28500 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.990 REMARK 3 FREE R VALUE TEST SET COUNT : 1992 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 62.2000 - 6.2600 0.92 1994 154 0.1609 0.1710 REMARK 3 2 6.2600 - 4.9700 0.98 2068 156 0.1611 0.2155 REMARK 3 3 4.9700 - 4.3400 0.99 2040 152 0.1460 0.1736 REMARK 3 4 4.3400 - 3.9500 0.92 1903 149 0.1682 0.2276 REMARK 3 5 3.9500 - 3.7000 0.83 1507 114 0.2072 0.2519 REMARK 3 6 3.6600 - 3.4700 0.98 1727 134 0.2287 0.2858 REMARK 3 7 3.4400 - 3.2800 0.97 1897 140 0.2372 0.3252 REMARK 3 8 3.2800 - 3.1300 0.98 2021 145 0.2451 0.2982 REMARK 3 9 3.1300 - 3.0100 0.98 2045 154 0.2741 0.3186 REMARK 3 10 3.0100 - 2.9100 0.98 2026 148 0.2754 0.3230 REMARK 3 11 2.9100 - 2.8200 0.92 1872 146 0.2738 0.3535 REMARK 3 12 2.8200 - 2.7400 0.96 2001 140 0.2726 0.3246 REMARK 3 13 2.7400 - 2.6700 0.67 1392 98 0.2867 0.3131 REMARK 3 14 2.6700 - 2.6000 0.98 2015 162 0.3225 0.3601 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.349 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.065 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 54.37 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 66.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 5701 REMARK 3 ANGLE : 1.041 7781 REMARK 3 CHIRALITY : 0.056 869 REMARK 3 PLANARITY : 0.009 1005 REMARK 3 DIHEDRAL : 17.793 1969 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 1 THROUGH 148 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.8071 7.8944 36.1421 REMARK 3 T TENSOR REMARK 3 T11: 0.3697 T22: 0.3479 REMARK 3 T33: 0.3537 T12: 0.0029 REMARK 3 T13: 0.0715 T23: -0.0001 REMARK 3 L TENSOR REMARK 3 L11: 2.8165 L22: 1.3649 REMARK 3 L33: 4.6499 L12: -1.1909 REMARK 3 L13: 2.7178 L23: -1.3977 REMARK 3 S TENSOR REMARK 3 S11: -0.1172 S12: -0.1748 S13: 0.1671 REMARK 3 S21: 0.0354 S22: 0.2196 S23: 0.1586 REMARK 3 S31: -0.4007 S32: -0.5668 S33: -0.1065 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 149 THROUGH 169 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.9319 -10.6549 55.5613 REMARK 3 T TENSOR REMARK 3 T11: 0.5816 T22: 0.4909 REMARK 3 T33: 0.4746 T12: 0.1166 REMARK 3 T13: -0.0048 T23: 0.1193 REMARK 3 L TENSOR REMARK 3 L11: 9.5624 L22: 8.5027 REMARK 3 L33: 7.6346 L12: 1.3084 REMARK 3 L13: -2.7579 L23: 5.0631 REMARK 3 S TENSOR REMARK 3 S11: -1.0222 S12: -1.2225 S13: -0.8720 REMARK 3 S21: 1.4531 S22: 0.8942 S23: -1.0469 REMARK 3 S31: 1.0428 S32: 1.3958 S33: 0.1596 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 170 THROUGH 238 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.2469 -3.2755 50.3225 REMARK 3 T TENSOR REMARK 3 T11: 0.4169 T22: 0.2317 REMARK 3 T33: 0.3442 T12: 0.0017 REMARK 3 T13: 0.0122 T23: -0.0245 REMARK 3 L TENSOR REMARK 3 L11: 4.4083 L22: 2.4053 REMARK 3 L33: 3.8907 L12: 1.7474 REMARK 3 L13: 0.1670 L23: -0.9966 REMARK 3 S TENSOR REMARK 3 S11: -0.0620 S12: -0.0462 S13: -0.0812 REMARK 3 S21: -0.3111 S22: -0.1218 S23: -0.2801 REMARK 3 S31: 0.1112 S32: 0.2891 S33: 0.1543 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 2 THROUGH 119 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.9071 -12.7861 31.5918 REMARK 3 T TENSOR REMARK 3 T11: 0.5667 T22: 0.4367 REMARK 3 T33: 0.4823 T12: -0.1612 REMARK 3 T13: -0.0922 T23: -0.0265 REMARK 3 L TENSOR REMARK 3 L11: 2.9928 L22: 7.7395 REMARK 3 L33: 5.0624 L12: -1.3647 REMARK 3 L13: 1.2056 L23: -1.1863 REMARK 3 S TENSOR REMARK 3 S11: 0.2140 S12: 0.2294 S13: -0.8071 REMARK 3 S21: -0.0551 S22: 0.1533 S23: 0.8731 REMARK 3 S31: 0.9081 S32: -0.6129 S33: -0.3565 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 120 THROUGH 146 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.3935 -14.7539 54.5310 REMARK 3 T TENSOR REMARK 3 T11: 0.4447 T22: 0.2742 REMARK 3 T33: 0.3419 T12: 0.0124 REMARK 3 T13: 0.0356 T23: 0.0084 REMARK 3 L TENSOR REMARK 3 L11: 3.6637 L22: 1.5618 REMARK 3 L33: 2.4059 L12: -0.6006 REMARK 3 L13: 2.0256 L23: -1.7792 REMARK 3 S TENSOR REMARK 3 S11: 0.2738 S12: 0.0047 S13: -0.4123 REMARK 3 S21: -0.3610 S22: -0.0849 S23: 0.1500 REMARK 3 S31: 0.4588 S32: -0.0321 S33: -0.1502 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 147 THROUGH 232 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.7561 -17.4018 61.0476 REMARK 3 T TENSOR REMARK 3 T11: 0.3328 T22: 0.2444 REMARK 3 T33: 0.3447 T12: 0.0026 REMARK 3 T13: 0.0790 T23: 0.0225 REMARK 3 L TENSOR REMARK 3 L11: 4.3538 L22: 7.4815 REMARK 3 L33: 6.9372 L12: 0.6141 REMARK 3 L13: 2.2459 L23: 1.2413 REMARK 3 S TENSOR REMARK 3 S11: 0.0112 S12: -0.3309 S13: -0.2465 REMARK 3 S21: 0.1650 S22: -0.0919 S23: 0.4841 REMARK 3 S31: -0.0034 S32: -0.1654 S33: 0.0459 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 27 THROUGH 188 ) REMARK 3 ORIGIN FOR THE GROUP (A): -31.0308 6.6108 4.4009 REMARK 3 T TENSOR REMARK 3 T11: 0.4261 T22: 0.6809 REMARK 3 T33: 0.3796 T12: -0.0717 REMARK 3 T13: -0.0320 T23: 0.0794 REMARK 3 L TENSOR REMARK 3 L11: 4.6080 L22: 4.3357 REMARK 3 L33: 5.8463 L12: 1.0166 REMARK 3 L13: 1.7675 L23: 1.1454 REMARK 3 S TENSOR REMARK 3 S11: -0.2681 S12: 0.1841 S13: -0.0054 REMARK 3 S21: 0.2026 S22: 0.2504 S23: 0.0607 REMARK 3 S31: -0.0656 S32: -0.7930 S33: 0.0275 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 189 THROUGH 329 ) REMARK 3 ORIGIN FOR THE GROUP (A): -68.8665 -16.5380 -19.5229 REMARK 3 T TENSOR REMARK 3 T11: 0.6150 T22: 1.2887 REMARK 3 T33: 0.6918 T12: -0.3789 REMARK 3 T13: 0.0319 T23: -0.0376 REMARK 3 L TENSOR REMARK 3 L11: 4.2011 L22: 1.1138 REMARK 3 L33: 3.5488 L12: 2.2387 REMARK 3 L13: 4.7321 L23: 2.1720 REMARK 3 S TENSOR REMARK 3 S11: -0.7664 S12: 0.7262 S13: 0.3466 REMARK 3 S21: -0.5228 S22: 0.5270 S23: 0.2265 REMARK 3 S31: -0.4674 S32: 0.5882 S33: 0.2174 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8TV1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-AUG-23. REMARK 100 THE DEPOSITION ID IS D_1000276673. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-NOV-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28513 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 62.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.4 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.13000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.72 REMARK 200 COMPLETENESS FOR SHELL (%) : 79.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 1.10200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 14% PEG 20K, 100 MM HEPES 7.0, 200 MM REMARK 280 KSCN, PH 7.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 61.71850 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.62450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 61.71850 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 36.62450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6810 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32840 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -62.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER D 239 REMARK 465 CYS D 240 REMARK 465 ASP D 241 REMARK 465 LYS D 242 REMARK 465 THR D 243 REMARK 465 HIS D 244 REMARK 465 THR D 245 REMARK 465 ASP E 1 REMARK 465 ALA C 23 REMARK 465 ALA C 24 REMARK 465 GLN C 25 REMARK 465 GLY C 26 REMARK 465 ARG C 330 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU D 1 CG CD OE1 OE2 REMARK 470 LYS D 48 NZ REMARK 470 LYS D 72 CG CD CE NZ REMARK 470 GLU D 97 CG CD OE1 OE2 REMARK 470 LYS D 153 CG CD CE NZ REMARK 470 LYS D 225 CD CE NZ REMARK 470 ILE E 2 CG1 CG2 CD1 REMARK 470 GLN E 3 OE1 NE2 REMARK 470 GLN E 27 CG CD OE1 NE2 REMARK 470 LYS E 48 NZ REMARK 470 LYS E 51 NZ REMARK 470 GLN E 118 CG CD OE1 NE2 REMARK 470 LYS E 125 CD CE NZ REMARK 470 LYS E 187 CG CD CE NZ REMARK 470 LYS E 206 CD CE NZ REMARK 470 LYS E 208 CE NZ REMARK 470 LEU C 41 CG CD1 CD2 REMARK 470 TYR C 48 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS C 50 CG CD CE NZ REMARK 470 ASN C 60 CG OD1 ND2 REMARK 470 ASP C 61 CG OD1 OD2 REMARK 470 MET C 62 CG SD CE REMARK 470 GLU C 90 CG CD OE1 OE2 REMARK 470 GLU C 92 CG CD OE1 OE2 REMARK 470 LYS C 116 CG CD CE NZ REMARK 470 LYS C 136 CG CD CE NZ REMARK 470 ASP C 148 CG OD1 OD2 REMARK 470 GLU C 149 CG CD OE1 OE2 REMARK 470 ARG C 159 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 176 CG CD CE NZ REMARK 470 ASP C 219 CG OD1 OD2 REMARK 470 LEU C 223 CG CD1 CD2 REMARK 470 ARG C 244 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 270 CG CD OE1 OE2 REMARK 470 GLU C 311 CB CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA D 122 36.15 -143.40 REMARK 500 ALA D 123 -149.67 56.26 REMARK 500 ALA E 57 -22.24 76.55 REMARK 500 SER E 58 -10.75 -141.84 REMARK 500 ALA E 100 -173.12 -175.59 REMARK 500 PHE E 111 25.30 49.96 REMARK 500 SER E 186 0.74 -69.80 REMARK 500 LEU C 41 -129.40 33.68 REMARK 500 CYS C 70 40.86 -144.70 REMARK 500 VAL C 255 72.08 49.13 REMARK 500 GLU C 270 -125.03 54.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8TRV RELATED DB: PDB REMARK 900 RELATED ID: 8TV2 RELATED DB: PDB REMARK 900 RELATED ID: 8TV5 RELATED DB: PDB DBREF 8TV1 D 1 245 PDB 8TV1 8TV1 1 245 DBREF 8TV1 E 1 232 PDB 8TV1 8TV1 1 232 DBREF 8TV1 C 23 326 UNP P29317 EPHA2_HUMAN 23 326 SEQADV 8TV1 LEU C 327 UNP P29317 EXPRESSION TAG SEQADV 8TV1 VAL C 328 UNP P29317 EXPRESSION TAG SEQADV 8TV1 PRO C 329 UNP P29317 EXPRESSION TAG SEQADV 8TV1 ARG C 330 UNP P29317 EXPRESSION TAG SEQRES 1 D 237 GLU VAL GLN LEU VAL GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 D 237 PRO GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 D 237 PHE THR ILE SER SER SER TYR ILE HIS TRP VAL ARG GLN SEQRES 4 D 237 ALA PRO GLY LYS GLY LEU GLU TRP VAL ALA SER ILE SER SEQRES 5 D 237 SER TYR TYR GLY SER THR SER TYR ALA ASP SER VAL LYS SEQRES 6 D 237 GLY ARG PHE THR ILE SER ALA ASP THR SER LYS ASN THR SEQRES 7 D 237 ALA TYR LEU GLN MET ASN SER LEU ARG ALA GLU ASP THR SEQRES 8 D 237 ALA VAL TYR TYR CYS ALA ARG SER HIS TYR SER VAL TRP SEQRES 9 D 237 TRP GLY TRP HIS SER VAL SER TYR TYR ALA ALA PHE ASP SEQRES 10 D 237 TYR TRP GLY GLN GLY THR LEU VAL THR VAL SER SER ALA SEQRES 11 D 237 SER THR LYS GLY PRO SER VAL PHE PRO LEU ALA PRO SER SEQRES 12 D 237 SER LYS SER THR SER GLY GLY THR ALA ALA LEU GLY CYS SEQRES 13 D 237 LEU VAL LYS ASP TYR PHE PRO GLU PRO VAL THR VAL SER SEQRES 14 D 237 TRP ASN SER GLY ALA LEU THR SER GLY VAL HIS THR PHE SEQRES 15 D 237 PRO ALA VAL LEU GLN SER SER GLY LEU TYR SER LEU SER SEQRES 16 D 237 SER VAL VAL THR VAL PRO SER SER SER LEU GLY THR GLN SEQRES 17 D 237 THR TYR ILE CYS ASN VAL ASN HIS LYS PRO SER ASN THR SEQRES 18 D 237 LYS VAL ASP LYS LYS VAL GLU PRO LYS SER CYS ASP LYS SEQRES 19 D 237 THR HIS THR SEQRES 1 E 211 ASP ILE GLN MET THR GLN SER PRO SER SER LEU SER ALA SEQRES 2 E 211 SER VAL GLY ASP ARG VAL THR ILE THR CYS ARG ALA SER SEQRES 3 E 211 GLN SER VAL SER SER ALA VAL ALA TRP TYR GLN GLN LYS SEQRES 4 E 211 PRO GLY LYS ALA PRO LYS LEU LEU ILE TYR SER ALA SER SEQRES 5 E 211 SER LEU TYR SER GLY VAL PRO SER ARG PHE SER GLY SER SEQRES 6 E 211 ARG SER GLY THR ASP PHE THR LEU THR ILE SER SER LEU SEQRES 7 E 211 GLN PRO GLU ASP PHE ALA THR TYR TYR CYS GLN GLN GLY SEQRES 8 E 211 SER ALA PRO PHE THR PHE GLY GLN GLY THR LYS VAL GLU SEQRES 9 E 211 ILE LYS ARG THR VAL ALA ALA PRO SER VAL PHE ILE PHE SEQRES 10 E 211 PRO PRO SER ASP GLU GLN LEU LYS SER GLY THR ALA SER SEQRES 11 E 211 VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG GLU ALA SEQRES 12 E 211 LYS VAL SER TRP TYR VAL ASP ASN ALA LEU GLN SER GLY SEQRES 13 E 211 ASN SER GLN GLU SER VAL THR GLU GLN ASP SER LYS ASP SEQRES 14 E 211 SER THR TYR SER LEU SER SER THR LEU THR LEU SER LYS SEQRES 15 E 211 ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA CYS GLU VAL SEQRES 16 E 211 THR GLN GLY THR THR SER VAL THR LYS SER PHE ASN ARG SEQRES 17 E 211 GLY GLU CYS SEQRES 1 C 308 ALA ALA GLN GLY LYS GLU VAL VAL LEU LEU ASP PHE ALA SEQRES 2 C 308 ALA ALA GLY GLY GLU LEU GLY TRP LEU THR HIS PRO TYR SEQRES 3 C 308 GLY LYS GLY TRP ASP LEU MET GLN ASN ILE MET ASN ASP SEQRES 4 C 308 MET PRO ILE TYR MET TYR SER VAL CYS ASN VAL MET SER SEQRES 5 C 308 GLY ASP GLN ASP ASN TRP LEU ARG THR ASN TRP VAL TYR SEQRES 6 C 308 ARG GLY GLU ALA GLU ARG ILE PHE ILE GLU LEU LYS PHE SEQRES 7 C 308 THR VAL ARG ASP CYS ASN SER PHE PRO GLY GLY ALA SER SEQRES 8 C 308 SER CYS LYS GLU THR PHE ASN LEU TYR TYR ALA GLU SER SEQRES 9 C 308 ASP LEU ASP TYR GLY THR ASN PHE GLN LYS ARG LEU PHE SEQRES 10 C 308 THR LYS ILE ASP THR ILE ALA PRO ASP GLU ILE THR VAL SEQRES 11 C 308 SER SER ASP PHE GLU ALA ARG HIS VAL LYS LEU ASN VAL SEQRES 12 C 308 GLU GLU ARG SER VAL GLY PRO LEU THR ARG LYS GLY PHE SEQRES 13 C 308 TYR LEU ALA PHE GLN ASP ILE GLY ALA CYS VAL ALA LEU SEQRES 14 C 308 LEU SER VAL ARG VAL TYR TYR LYS LYS CYS PRO GLU LEU SEQRES 15 C 308 LEU GLN GLY LEU ALA HIS PHE PRO GLU THR ILE ALA GLY SEQRES 16 C 308 SER ASP ALA PRO SER LEU ALA THR VAL ALA GLY THR CYS SEQRES 17 C 308 VAL ASP HIS ALA VAL VAL PRO PRO GLY GLY GLU GLU PRO SEQRES 18 C 308 ARG MET HIS CYS ALA VAL ASP GLY GLU TRP LEU VAL PRO SEQRES 19 C 308 ILE GLY GLN CYS LEU CYS GLN ALA GLY TYR GLU LYS VAL SEQRES 20 C 308 GLU ASP ALA CYS GLN ALA CYS SER PRO GLY PHE PHE LYS SEQRES 21 C 308 PHE GLU ALA SER GLU SER PRO CYS LEU GLU CYS PRO GLU SEQRES 22 C 308 HIS THR LEU PRO SER PRO GLU GLY ALA THR SER CYS GLU SEQRES 23 C 308 CYS GLU GLU GLY PHE PHE ARG ALA PRO GLN ASP PRO ALA SEQRES 24 C 308 SER MET PRO CYS THR LEU VAL PRO ARG HET CL D 301 1 HET EDO E 301 4 HET CL E 302 1 HETNAM CL CHLORIDE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 4 CL 2(CL 1-) FORMUL 5 EDO C2 H6 O2 FORMUL 7 HOH *61(H2 O) HELIX 1 AA1 THR D 29 SER D 32 5 4 HELIX 2 AA2 ARG D 95 THR D 99 5 5 HELIX 3 AA3 SER D 211 LEU D 213 5 3 HELIX 4 AA4 LYS D 225 ASN D 228 5 4 HELIX 5 AA5 GLN E 95 PHE E 99 5 5 HELIX 6 AA6 SER E 139 SER E 145 1 7 HELIX 7 AA7 LYS E 201 LYS E 206 1 6 HELIX 8 AA8 GLN C 135 PHE C 139 5 5 SHEET 1 AA1 4 GLN D 3 SER D 7 0 SHEET 2 AA1 4 LEU D 19 SER D 26 -1 O ALA D 24 N VAL D 5 SHEET 3 AA1 4 THR D 86 MET D 91 -1 O ALA D 87 N CYS D 23 SHEET 4 AA1 4 PHE D 76 ASP D 81 -1 N THR D 77 O GLN D 90 SHEET 1 AA2 6 GLY D 11 VAL D 13 0 SHEET 2 AA2 6 THR D 131 VAL D 135 1 O THR D 134 N GLY D 11 SHEET 3 AA2 6 ALA D 100 SER D 107 -1 N TYR D 102 O THR D 131 SHEET 4 AA2 6 TYR D 34 GLN D 44 -1 N HIS D 40 O ALA D 105 SHEET 5 AA2 6 LEU D 50 SER D 57 -1 O GLU D 51 N ARG D 43 SHEET 6 AA2 6 SER D 62 TYR D 67 -1 O SER D 64 N SER D 55 SHEET 1 AA3 6 HIS D 116 SER D 117 0 SHEET 2 AA3 6 ASP C 53 ASN C 57 -1 O GLN C 56 N HIS D 116 SHEET 3 AA3 6 ILE C 64 VAL C 69 -1 O MET C 66 N MET C 55 SHEET 4 AA3 6 VAL C 189 CYS C 201 -1 O LEU C 191 N TYR C 67 SHEET 5 AA3 6 ILE C 94 VAL C 102 -1 N GLU C 97 O ARG C 195 SHEET 6 AA3 6 ASN C 164 VAL C 170 -1 O ASN C 164 N PHE C 100 SHEET 1 AA4 3 GLU C 28 ASP C 33 0 SHEET 2 AA4 3 VAL C 189 CYS C 201 -1 O VAL C 196 N LEU C 31 SHEET 3 AA4 3 THR C 214 ILE C 215 -1 O THR C 214 N CYS C 201 SHEET 1 AA5 4 SER D 144 LEU D 148 0 SHEET 2 AA5 4 THR D 159 TYR D 169 -1 O LYS D 167 N SER D 144 SHEET 3 AA5 4 TYR D 200 PRO D 209 -1 O LEU D 202 N VAL D 166 SHEET 4 AA5 4 VAL D 187 THR D 189 -1 N HIS D 188 O VAL D 205 SHEET 1 AA6 4 SER D 144 LEU D 148 0 SHEET 2 AA6 4 THR D 159 TYR D 169 -1 O LYS D 167 N SER D 144 SHEET 3 AA6 4 TYR D 200 PRO D 209 -1 O LEU D 202 N VAL D 166 SHEET 4 AA6 4 VAL D 193 LEU D 194 -1 N VAL D 193 O SER D 201 SHEET 1 AA7 3 THR D 175 TRP D 178 0 SHEET 2 AA7 3 ILE D 219 HIS D 224 -1 O ASN D 221 N SER D 177 SHEET 3 AA7 3 THR D 229 LYS D 234 -1 O VAL D 231 N VAL D 222 SHEET 1 AA8 4 MET E 4 SER E 7 0 SHEET 2 AA8 4 VAL E 19 ALA E 25 -1 O ARG E 24 N THR E 5 SHEET 3 AA8 4 ASP E 86 ILE E 91 -1 O PHE E 87 N CYS E 23 SHEET 4 AA8 4 PHE E 76 ARG E 80 -1 N SER E 77 O THR E 90 SHEET 1 AA9 6 SER E 10 SER E 14 0 SHEET 2 AA9 6 THR E 120 LYS E 125 1 O LYS E 125 N ALA E 13 SHEET 3 AA9 6 ALA E 100 GLN E 105 -1 N ALA E 100 O VAL E 122 SHEET 4 AA9 6 ALA E 40 GLN E 44 -1 N ALA E 40 O GLN E 105 SHEET 5 AA9 6 PRO E 50 TYR E 55 -1 O LEU E 53 N TRP E 41 SHEET 6 AA9 6 SER E 66 LEU E 67 -1 O SER E 66 N TYR E 55 SHEET 1 AB1 4 SER E 132 PHE E 136 0 SHEET 2 AB1 4 THR E 147 PHE E 157 -1 O LEU E 153 N PHE E 134 SHEET 3 AB1 4 TYR E 191 SER E 200 -1 O LEU E 199 N ALA E 148 SHEET 4 AB1 4 SER E 177 VAL E 181 -1 N SER E 180 O SER E 194 SHEET 1 AB2 4 ALA E 171 LEU E 172 0 SHEET 2 AB2 4 LYS E 163 VAL E 168 -1 N VAL E 168 O ALA E 171 SHEET 3 AB2 4 VAL E 209 GLN E 216 -1 O THR E 215 N LYS E 163 SHEET 4 AB2 4 THR E 219 ASN E 228 -1 O VAL E 223 N VAL E 214 SHEET 1 AB3 4 LEU C 44 HIS C 46 0 SHEET 2 AB3 4 ASN C 79 ARG C 82 -1 O TRP C 80 N HIS C 46 SHEET 3 AB3 4 GLY C 177 ASP C 184 -1 O PHE C 182 N LEU C 81 SHEET 4 AB3 4 VAL C 86 TYR C 87 -1 N VAL C 86 O PHE C 178 SHEET 1 AB4 5 LEU C 44 HIS C 46 0 SHEET 2 AB4 5 ASN C 79 ARG C 82 -1 O TRP C 80 N HIS C 46 SHEET 3 AB4 5 GLY C 177 ASP C 184 -1 O PHE C 182 N LEU C 81 SHEET 4 AB4 5 PHE C 119 SER C 126 -1 N ALA C 124 O TYR C 179 SHEET 5 AB4 5 THR C 140 ILE C 145 -1 O ILE C 145 N PHE C 119 SHEET 1 AB5 3 LEU C 204 GLN C 206 0 SHEET 2 AB5 3 ALA C 209 PHE C 211 -1 O PHE C 211 N LEU C 204 SHEET 3 AB5 3 THR C 229 CYS C 230 -1 O THR C 229 N HIS C 210 SHEET 1 AB6 3 ALA C 224 ALA C 227 0 SHEET 2 AB6 3 ARG C 244 CYS C 247 -1 O MET C 245 N VAL C 226 SHEET 3 AB6 3 TRP C 253 ILE C 257 -1 O ILE C 257 N ARG C 244 SHEET 1 AB7 2 ALA C 234 VAL C 235 0 SHEET 2 AB7 2 LEU C 261 CYS C 262 -1 O LEU C 261 N VAL C 235 SHEET 1 AB8 2 TYR C 266 VAL C 269 0 SHEET 2 AB8 2 ALA C 272 ALA C 275 -1 O GLN C 274 N GLU C 267 SHEET 1 AB9 2 PHE C 280 PHE C 281 0 SHEET 2 AB9 2 LEU C 291 GLU C 292 -1 O LEU C 291 N PHE C 281 SHEET 1 AC1 2 PHE C 313 PHE C 314 0 SHEET 2 AC1 2 THR C 326 LEU C 327 -1 O THR C 326 N PHE C 314 SSBOND 1 CYS D 23 CYS D 104 1555 1555 2.06 SSBOND 2 CYS D 164 CYS D 220 1555 1555 2.03 SSBOND 3 CYS E 23 CYS E 104 1555 1555 2.04 SSBOND 4 CYS E 152 CYS E 212 1555 1555 2.02 SSBOND 5 CYS C 70 CYS C 188 1555 1555 2.04 SSBOND 6 CYS C 105 CYS C 115 1555 1555 2.04 SSBOND 7 CYS C 201 CYS C 247 1555 1555 2.04 SSBOND 8 CYS C 230 CYS C 260 1555 1555 2.05 SSBOND 9 CYS C 262 CYS C 273 1555 1555 2.05 SSBOND 10 CYS C 276 CYS C 290 1555 1555 2.05 SSBOND 11 CYS C 293 CYS C 307 1555 1555 2.05 SSBOND 12 CYS C 309 CYS C 325 1555 1555 2.06 CISPEP 1 PHE D 170 PRO D 171 0 -7.25 CISPEP 2 GLU D 172 PRO D 173 0 0.18 CISPEP 3 SER E 7 PRO E 8 0 -2.56 CISPEP 4 TYR E 158 PRO E 159 0 -2.25 CISPEP 5 HIS C 46 PRO C 47 0 2.91 CISPEP 6 GLY C 171 PRO C 172 0 -7.37 CRYST1 123.437 73.249 118.570 90.00 107.43 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008101 0.000000 0.002543 0.00000 SCALE2 0.000000 0.013652 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008840 0.00000