HEADER PEPTIDE BINDING PROTEIN 17-AUG-23 8TV8 TITLE CRYSTAL STRUCTURE OF NONTYPEABLE HAEMOPHILUS INFLUENZAE SAPA COMPND MOL_ID: 1; COMPND 2 MOLECULE: ABC-TYPE TRANSPORT SYSTEM, PERIPLASMIC COMPONENT, INVOLVED COMPND 3 IN ANTIMICROBIAL PEPTIDE RESISTANCE; COMPND 4 CHAIN: A; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HAEMOPHILUS INFLUENZAE 86-028NP; SOURCE 3 ORGANISM_TAXID: 281310; SOURCE 4 GENE: SAPA, NTHI1401; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS PEPTIDE BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.J.TANAKA,E.R.BUECHEL,K.G.RIVERA,H.W.PINKETT REVDAT 2 21-FEB-24 8TV8 1 JRNL REVDAT 1 17-JAN-24 8TV8 0 JRNL AUTH K.G.RIVERA,K.J.TANAKA,E.R.BUECHEL,O.ORIGEL JR.,A.HARRISON, JRNL AUTH 2 K.M.MASON,H.W.PINKETT JRNL TITL ANTIMICROBIAL PEPTIDE RECOGNITION MOTIF OF THE SUBSTRATE JRNL TITL 2 BINDING PROTEIN SAPA FROM NONTYPEABLE HAEMOPHILUS INFLUENZAE JRNL TITL 3 . JRNL REF BIOCHEMISTRY V. 63 294 2024 JRNL REFN ISSN 0006-2960 JRNL PMID 38189237 JRNL DOI 10.1021/ACS.BIOCHEM.3C00562 REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0352 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.01 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 45239 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.133 REMARK 3 FREE R VALUE TEST SET COUNT : 2322 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.25 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.31 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3109 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.97 REMARK 3 BIN R VALUE (WORKING SET) : 0.2520 REMARK 3 BIN FREE R VALUE SET COUNT : 183 REMARK 3 BIN FREE R VALUE : 0.3080 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4152 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 114 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 54.69 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.11300 REMARK 3 B22 (A**2) : -0.11300 REMARK 3 B33 (A**2) : 0.22700 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.183 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.162 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.120 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.866 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.946 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4253 ; 0.009 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 3826 ; 0.012 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5779 ; 1.691 ; 1.648 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8923 ; 0.622 ; 1.561 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 511 ; 7.093 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 23 ;15.333 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 722 ;15.632 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 641 ; 0.076 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4803 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 853 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 711 ; 0.216 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 74 ; 0.145 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2039 ; 0.178 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 110 ; 0.173 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2050 ; 5.398 ; 5.467 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2050 ; 5.399 ; 5.468 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2559 ; 7.057 ; 8.180 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2560 ; 7.056 ; 8.181 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2203 ; 6.101 ; 6.050 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2204 ; 6.100 ; 6.051 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 3220 ; 8.657 ; 8.841 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3221 ; 8.656 ; 8.843 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 8TV8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-AUG-23. REMARK 100 THE DEPOSITION ID IS D_1000275874. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-JUN-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978560 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45307 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 44.014 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 19.20 REMARK 200 R MERGE (I) : 0.08900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.32 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 19.90 REMARK 200 R MERGE FOR SHELL (I) : 0.71800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: BALBES REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS PH 9.4, 1.5 M AMMONIUM REMARK 280 PHOSPHATE, 0.18 M SODIUM THIOCYANATE, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.79250 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 59.87750 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 59.87750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 32.39625 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 59.87750 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 59.87750 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 97.18875 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 59.87750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 59.87750 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 32.39625 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 59.87750 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 59.87750 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 97.18875 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 64.79250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LEU A 2 REMARK 465 ARG A 3 REMARK 465 LEU A 4 REMARK 465 ASN A 5 REMARK 465 LEU A 6 REMARK 465 ARG A 7 REMARK 465 PHE A 8 REMARK 465 LEU A 9 REMARK 465 SER A 10 REMARK 465 PHE A 11 REMARK 465 LEU A 12 REMARK 465 LEU A 13 REMARK 465 CYS A 14 REMARK 465 ILE A 15 REMARK 465 SER A 16 REMARK 465 GLN A 17 REMARK 465 SER A 18 REMARK 465 VAL A 19 REMARK 465 GLU A 20 REMARK 465 LEU A 21 REMARK 465 GLN A 22 REMARK 465 ALA A 23 REMARK 465 ALA A 24 REMARK 465 PRO A 25 REMARK 465 SER A 26 REMARK 465 VAL A 27 REMARK 465 PRO A 28 REMARK 465 THR A 29 REMARK 465 PHE A 30 REMARK 465 LEU A 31 REMARK 465 THR A 32 REMARK 465 GLU A 33 REMARK 465 GLY A 44 REMARK 465 PHE A 45 REMARK 465 SER A 46 REMARK 465 PHE A 47 REMARK 465 ASN A 48 REMARK 465 PRO A 49 REMARK 465 GLN A 50 REMARK 465 THR A 51 REMARK 465 ALA A 52 REMARK 465 ASP A 53 REMARK 465 ALA A 54 REMARK 465 GLY A 55 REMARK 465 THR A 56 REMARK 465 SER A 57 REMARK 465 GLN A 561 REMARK 465 GLU A 562 REMARK 465 LYS A 563 REMARK 465 HIS A 564 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 540 O ILE A 560 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 252 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 252 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 ARG A 277 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 277 NE - CZ - NH2 ANGL. DEV. = -6.0 DEGREES REMARK 500 ARG A 344 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG A 533 CB - CG - CD ANGL. DEV. = -16.3 DEGREES REMARK 500 ARG A 533 NE - CZ - NH2 ANGL. DEV. = -5.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 82 -95.58 -123.94 REMARK 500 PRO A 138 151.41 -49.08 REMARK 500 GLU A 142 -72.28 -124.51 REMARK 500 ALA A 143 117.43 112.29 REMARK 500 ASN A 144 6.20 84.50 REMARK 500 ARG A 153 -52.04 77.09 REMARK 500 PHE A 164 79.38 -114.05 REMARK 500 ASP A 195 97.58 -161.88 REMARK 500 ALA A 207 36.63 -96.11 REMARK 500 ASP A 222 78.37 6.56 REMARK 500 ASN A 223 42.03 -153.00 REMARK 500 LYS A 258 -158.32 -122.71 REMARK 500 TYR A 291 56.52 39.40 REMARK 500 PHE A 379 41.40 -107.14 REMARK 500 HIS A 382 76.25 -153.08 REMARK 500 SER A 456 -152.36 -152.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 129 0.10 SIDE CHAIN REMARK 500 ARG A 277 0.20 SIDE CHAIN REMARK 500 ARG A 344 0.10 SIDE CHAIN REMARK 500 ARG A 437 0.08 SIDE CHAIN REMARK 500 ARG A 533 0.16 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 8TV8 A 1 564 UNP Q4QL73 Q4QL73_HAEI8 1 564 SEQRES 1 A 564 MET LEU ARG LEU ASN LEU ARG PHE LEU SER PHE LEU LEU SEQRES 2 A 564 CYS ILE SER GLN SER VAL GLU LEU GLN ALA ALA PRO SER SEQRES 3 A 564 VAL PRO THR PHE LEU THR GLU ASN GLY LEU THR TYR CYS SEQRES 4 A 564 THR HIS ALA SER GLY PHE SER PHE ASN PRO GLN THR ALA SEQRES 5 A 564 ASP ALA GLY THR SER MET ASN VAL VAL THR GLU GLN ILE SEQRES 6 A 564 TYR ASN LYS LEU PHE ASP ILE LYS ASN HIS SER ALA THR SEQRES 7 A 564 LEU THR PRO MET LEU ALA GLN SER TYR SER ILE SER ALA SEQRES 8 A 564 ASP GLY LYS GLU ILE LEU LEU ASN LEU ARG HIS GLY VAL SEQRES 9 A 564 LYS PHE HIS GLN THR PRO TRP PHE THR PRO THR ARG ASP SEQRES 10 A 564 PHE ASN ALA GLU ASP VAL VAL PHE SER ILE ASN ARG VAL SEQRES 11 A 564 LEU GLY HIS ASN THR TYR LEU PRO THR LEU ALA GLU ALA SEQRES 12 A 564 ASN VAL THR TYR SER ASN PRO GLN TYR ARG VAL PHE HIS SEQRES 13 A 564 GLU GLN ALA ARG LYS VAL ARG PHE PRO TYR PHE ASP SER SEQRES 14 A 564 ILE LYS LEU ASN GLU LYS ILE LYS SER VAL THR ALA LEU SEQRES 15 A 564 SER PRO TYR GLN VAL LYS ILE GLU LEU PHE ALA PRO ASP SEQRES 16 A 564 SER SER ILE LEU SER HIS LEU ALA SER GLN TYR ALA ILE SEQRES 17 A 564 ILE PHE SER GLN GLU TYR ALA TYR GLN LEU SER ALA ASP SEQRES 18 A 564 ASP ASN LEU ALA GLN LEU ASP THR HIS PRO VAL GLY THR SEQRES 19 A 564 GLY PRO TYR GLN VAL LYS ASP TYR VAL TYR ASN GLN TYR SEQRES 20 A 564 VAL ARG LEU VAL ARG ASN GLU ASN TYR TRP LYS LYS GLU SEQRES 21 A 564 ALA LYS ILE GLU HIS ILE ILE VAL ASP LEU SER THR ASP SEQRES 22 A 564 ARG SER GLY ARG LEU VAL LYS PHE PHE ASN ASN GLU CYS SEQRES 23 A 564 GLN ILE ALA SER TYR PRO GLU VAL SER GLN ILE GLY LEU SEQRES 24 A 564 LEU LYS ASN ASP ASP LYS HIS TYR TYR MET GLN SER THR SEQRES 25 A 564 ASP GLY MET ASN LEU ALA TYR LEU ALA PHE ASN PHE ASP SEQRES 26 A 564 LYS PRO LEU MET ARG ASP HIS GLU ILE ARG ALA ALA ILE SEQRES 27 A 564 SER GLN SER LEU ASN ARG ALA ARG ILE ILE HIS SER ILE SEQRES 28 A 564 TYR HIS ASN THR ALA THR VAL ALA ASN ASN ILE ILE PRO SEQRES 29 A 564 GLU VAL SER TRP ALA SER THR VAL ASN THR PRO GLU PHE SEQRES 30 A 564 GLU PHE ASP TYR HIS PRO LYS ILE ALA LYS ASN LYS LEU SEQRES 31 A 564 ALA ASP LYS ASN LEU LEU LEU ASN LEU TRP VAL ILE ASN SEQRES 32 A 564 GLU GLU GLN VAL TYR ASN PRO ALA PRO PHE LYS MET ALA SEQRES 33 A 564 GLU MET ILE LYS TRP ASP LEU ALA GLN ALA GLY VAL LYS SEQRES 34 A 564 VAL LYS VAL ARG ALA VAL THR ARG PRO PHE LEU THR ALA SEQRES 35 A 564 GLN LEU ARG ASN GLN SER GLU ASN TYR ASP LEU ILE LEU SEQRES 36 A 564 SER GLY TRP LEU ALA GLY ASN LEU ASP PRO ASP GLY PHE SEQRES 37 A 564 MET ARG PRO ILE LEU SER CYS GLY THR LYS ASN GLU LEU SEQRES 38 A 564 THR ASN LEU SER ASN TRP CYS ASN GLU GLU PHE ASP GLN SEQRES 39 A 564 PHE MET ASP ARG ALA ILE THR THR SER HIS LEU SER SER SEQRES 40 A 564 ARG ALA LYS ALA TYR ASN GLU ALA GLN GLU LEU VAL LEU SEQRES 41 A 564 ARG GLU LEU PRO ILE ILE PRO ILE ALA ASN VAL LYS ARG SEQRES 42 A 564 ILE LEU VAL ALA ASN SER ARG VAL LYS GLY VAL LYS MET SEQRES 43 A 564 THR PRO PHE GLY SER LEU ASP PHE SER THR LEU TYR PHE SEQRES 44 A 564 ILE GLN GLU LYS HIS FORMUL 2 HOH *114(H2 O) HELIX 1 AA1 VAL A 61 TYR A 66 1 6 HELIX 2 AA2 ASN A 119 LEU A 131 1 13 HELIX 3 AA3 ARG A 153 PHE A 164 1 12 HELIX 4 AA4 PHE A 164 SER A 169 1 6 HELIX 5 AA5 ILE A 170 GLU A 174 5 5 HELIX 6 AA6 SER A 197 ALA A 203 1 7 HELIX 7 AA7 SER A 204 ILE A 208 5 5 HELIX 8 AA8 SER A 211 ASP A 221 1 11 HELIX 9 AA9 ALA A 225 HIS A 230 1 6 HELIX 10 AB1 ASP A 273 ASN A 283 1 11 HELIX 11 AB2 GLU A 293 SER A 295 5 3 HELIX 12 AB3 GLN A 296 LYS A 301 1 6 HELIX 13 AB4 ASP A 331 LEU A 342 1 12 HELIX 14 AB5 ASN A 343 HIS A 353 1 11 HELIX 15 AB6 SER A 367 ASN A 373 5 7 HELIX 16 AB7 HIS A 382 ALA A 391 1 10 HELIX 17 AB8 ASP A 392 ASN A 394 5 3 HELIX 18 AB9 ALA A 411 ALA A 426 1 16 HELIX 19 AC1 THR A 436 ALA A 442 1 7 HELIX 20 AC2 ASP A 464 SER A 474 1 11 HELIX 21 AC3 CYS A 475 LYS A 478 5 4 HELIX 22 AC4 ASN A 489 ILE A 500 1 12 HELIX 23 AC5 HIS A 504 LEU A 523 1 20 HELIX 24 AC6 ASP A 553 LEU A 557 5 5 SHEET 1 AA1 7 TYR A 237 VAL A 243 0 SHEET 2 AA1 7 TYR A 247 ARG A 252 -1 O ARG A 249 N ASP A 241 SHEET 3 AA1 7 HIS A 265 ASP A 269 -1 O ILE A 266 N LEU A 250 SHEET 4 AA1 7 GLY A 35 CYS A 39 1 N TYR A 38 O ASP A 269 SHEET 5 AA1 7 ILE A 288 SER A 290 1 O ILE A 288 N CYS A 39 SHEET 6 AA1 7 ARG A 533 ASN A 538 -1 O VAL A 536 N ALA A 289 SHEET 7 AA1 7 TYR A 307 THR A 312 -1 N THR A 312 O ARG A 533 SHEET 1 AA2 2 PHE A 70 ASP A 71 0 SHEET 2 AA2 2 THR A 80 PRO A 81 -1 O THR A 80 N ASP A 71 SHEET 1 AA3 4 ALA A 84 ILE A 89 0 SHEET 2 AA3 4 GLU A 95 LEU A 100 -1 O LEU A 97 N SER A 88 SHEET 3 AA3 4 GLN A 186 LEU A 191 -1 O VAL A 187 N LEU A 98 SHEET 4 AA3 4 ILE A 176 SER A 183 -1 N THR A 180 O LYS A 188 SHEET 1 AA4 6 ALA A 356 VAL A 358 0 SHEET 2 AA4 6 ILE A 525 VAL A 531 -1 O ASN A 530 N THR A 357 SHEET 3 AA4 6 ASN A 316 PHE A 322 -1 N LEU A 320 O ILE A 526 SHEET 4 AA4 6 LEU A 453 LEU A 459 -1 O ILE A 454 N ALA A 321 SHEET 5 AA4 6 LEU A 396 ILE A 402 1 N TRP A 400 O LEU A 453 SHEET 6 AA4 6 LYS A 429 VAL A 435 1 O LYS A 429 N LEU A 397 SHEET 1 AA5 2 VAL A 541 LYS A 542 0 SHEET 2 AA5 2 TYR A 558 PHE A 559 -1 O TYR A 558 N LYS A 542 SSBOND 1 CYS A 39 CYS A 286 1555 1555 2.99 SSBOND 2 CYS A 475 CYS A 488 1555 1555 2.16 CRYST1 119.755 119.755 129.585 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008350 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008350 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007717 0.00000