HEADER TRANSFERASE 18-AUG-23 8TVT TITLE STRUCTURE OF HUMAN CYSTEINE DESULFURASE NFS1 WITH L-PROPARGYLGLYCINE TITLE 2 BOUND TO ACTIVE SITE PLP IN COMPLEX WITH ISD11, ACP1 AND ISCU2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYSTEINE DESULFURASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.8.1.7; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: LYR MOTIF-CONTAINING PROTEIN 4; COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: ACYL CARRIER PROTEIN; COMPND 12 CHAIN: C; COMPND 13 SYNONYM: ACP; COMPND 14 ENGINEERED: YES; COMPND 15 MOL_ID: 4; COMPND 16 MOLECULE: IRON-SULFUR CLUSTER ASSEMBLY ENZYME ISCU; COMPND 17 CHAIN: D; COMPND 18 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NFS1, NIFS, HUSSY-08; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: LYRM4, C6ORF149, ISD11, CGI-203; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 17 ORGANISM_TAXID: 562; SOURCE 18 GENE: ACPP; SOURCE 19 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 20 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 21 MOL_ID: 4; SOURCE 22 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 23 ORGANISM_COMMON: HUMAN; SOURCE 24 ORGANISM_TAXID: 9606; SOURCE 25 GENE: ISCU; SOURCE 26 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 27 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NFS1, PG-PLP BOUND, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.CYGLER,M.T.BONIECKI REVDAT 1 11-SEP-24 8TVT 0 JRNL AUTH J.ZANGARI,O.STEHLING,S.A.FREIBERT,F.ROUAUD,K.MAUNDRELL, JRNL AUTH 2 V.S.BEINIER,M.S.FERRE,E.VARTHOLOMAIOU,S.MONTESSUIT,V.SCHULZ, JRNL AUTH 3 K.ZUHRA,V.G.RUIZ,S.RUDAZ,C.SZABO,S.HANSCHKE,T.TSUKAMOTO, JRNL AUTH 4 M.T.BONIECKI,M.CYGLER,R.LILL,J.C.MARTINOU JRNL TITL D-CYSTEINE IMPAIRS TUMOR GROWTH BY INHIBITING CYSTEINE JRNL TITL 2 DESULFURASE NFS1 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.20_4459: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.95 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 63783 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.152 REMARK 3 R VALUE (WORKING SET) : 0.150 REMARK 3 FREE R VALUE : 0.186 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3190 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 8.9400 - 5.6900 1.00 2905 154 0.1758 0.1937 REMARK 3 2 5.6800 - 4.5100 1.00 2739 144 0.1414 0.1664 REMARK 3 3 4.5100 - 3.9400 1.00 2696 142 0.1277 0.1549 REMARK 3 4 3.9400 - 3.5800 1.00 2679 141 0.1298 0.1590 REMARK 3 5 3.5800 - 3.3300 1.00 2658 140 0.1425 0.1701 REMARK 3 6 3.3300 - 3.1300 1.00 2645 139 0.1463 0.1722 REMARK 3 7 3.1300 - 2.9700 1.00 2631 138 0.1458 0.1978 REMARK 3 8 2.9700 - 2.8400 1.00 2645 139 0.1418 0.1828 REMARK 3 9 2.8400 - 2.7300 1.00 2630 139 0.1415 0.1835 REMARK 3 10 2.7300 - 2.6400 1.00 2604 137 0.1402 0.1779 REMARK 3 11 2.6400 - 2.5600 1.00 2627 138 0.1397 0.1968 REMARK 3 12 2.5600 - 2.4800 1.00 2598 137 0.1411 0.1853 REMARK 3 13 2.4800 - 2.4200 1.00 2617 138 0.1372 0.1677 REMARK 3 14 2.4200 - 2.3600 1.00 2616 137 0.1387 0.1768 REMARK 3 15 2.3600 - 2.3100 1.00 2585 136 0.1446 0.1884 REMARK 3 16 2.3100 - 2.2600 1.00 2599 137 0.1557 0.2205 REMARK 3 17 2.2600 - 2.2100 1.00 2575 136 0.1606 0.2304 REMARK 3 18 2.2100 - 2.1700 1.00 2611 137 0.1613 0.2137 REMARK 3 19 2.1700 - 2.1300 1.00 2587 136 0.1562 0.1952 REMARK 3 20 2.1300 - 2.1000 1.00 2579 136 0.1796 0.2340 REMARK 3 21 2.1000 - 2.0600 1.00 2592 136 0.1944 0.2482 REMARK 3 22 2.0600 - 2.0300 1.00 2580 136 0.2407 0.2860 REMARK 3 23 2.0300 - 2.0000 1.00 2595 137 0.2889 0.3350 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.760 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.019 NULL REMARK 3 ANGLE : 1.632 NULL REMARK 3 CHIRALITY : 0.100 869 REMARK 3 PLANARITY : 0.019 980 REMARK 3 DIHEDRAL : 16.466 947 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND ( RESID 55:454 OR RESID 503:503 ) ) REMARK 3 ORIGIN FOR THE GROUP (A): 41.603 62.585 74.229 REMARK 3 T TENSOR REMARK 3 T11: 0.0855 T22: 0.1511 REMARK 3 T33: 0.1612 T12: 0.0005 REMARK 3 T13: 0.0061 T23: 0.0017 REMARK 3 L TENSOR REMARK 3 L11: 0.5656 L22: 0.2611 REMARK 3 L33: 1.0973 L12: 0.0065 REMARK 3 L13: 0.1881 L23: -0.0647 REMARK 3 S TENSOR REMARK 3 S11: 0.0101 S12: -0.0513 S13: -0.0580 REMARK 3 S21: 0.0004 S22: 0.0212 S23: -0.0539 REMARK 3 S31: 0.0267 S32: 0.2210 S33: -0.0199 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN B AND RESID 2:85 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.294 85.474 67.155 REMARK 3 T TENSOR REMARK 3 T11: 0.1585 T22: 0.0916 REMARK 3 T33: 0.1442 T12: 0.0232 REMARK 3 T13: -0.0115 T23: -0.0151 REMARK 3 L TENSOR REMARK 3 L11: 2.8089 L22: 4.0341 REMARK 3 L33: 1.9032 L12: 1.2237 REMARK 3 L13: -0.1970 L23: -0.7794 REMARK 3 S TENSOR REMARK 3 S11: -0.0877 S12: 0.0659 S13: 0.1216 REMARK 3 S21: -0.1014 S22: 0.0666 S23: -0.0149 REMARK 3 S31: -0.2512 S32: 0.0605 S33: -0.0266 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN C AND ( RESID 3:76 OR RESID 301:301 ) ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.563 102.414 77.673 REMARK 3 T TENSOR REMARK 3 T11: 0.7527 T22: 0.3478 REMARK 3 T33: 0.3256 T12: 0.0115 REMARK 3 T13: 0.1006 T23: -0.0318 REMARK 3 L TENSOR REMARK 3 L11: 4.7858 L22: 1.6221 REMARK 3 L33: 3.0477 L12: -0.7253 REMARK 3 L13: 0.2168 L23: 1.4128 REMARK 3 S TENSOR REMARK 3 S11: 0.0721 S12: -0.8618 S13: 0.4838 REMARK 3 S21: 0.7660 S22: 0.0456 S23: 0.0325 REMARK 3 S31: -0.3518 S32: -0.3752 S33: -0.1100 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN D AND RESID 34:159 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.406 47.579 108.713 REMARK 3 T TENSOR REMARK 3 T11: 0.2217 T22: 0.2890 REMARK 3 T33: 0.3042 T12: -0.0042 REMARK 3 T13: 0.0366 T23: 0.0551 REMARK 3 L TENSOR REMARK 3 L11: 2.2490 L22: 3.7433 REMARK 3 L33: 4.4023 L12: 0.4844 REMARK 3 L13: -0.4194 L23: -0.3313 REMARK 3 S TENSOR REMARK 3 S11: -0.0965 S12: -0.1738 S13: -0.6330 REMARK 3 S21: 0.0631 S22: 0.0253 S23: 0.1136 REMARK 3 S31: 0.6928 S32: -0.1657 S33: 0.0067 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8TVT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-AUG-23. REMARK 100 THE DEPOSITION ID IS D_1000276623. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-MAY-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9796 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROCESS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 63786 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 48.950 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.900 REMARK 200 R MERGE (I) : 0.13790 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.4700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.85200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES PH 6.5 22.5 % PEG 400, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 288K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 123.01500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 43.13500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 43.13500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 61.50750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 43.13500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 43.13500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 184.52250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 43.13500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 43.13500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 61.50750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 43.13500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 43.13500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 184.52250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 123.01500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 630 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 52 REMARK 465 GLY A 53 REMARK 465 SER A 54 REMARK 465 MET B 1 REMARK 465 ARG B 86 REMARK 465 ASP B 87 REMARK 465 MET B 88 REMARK 465 PRO B 89 REMARK 465 ARG B 90 REMARK 465 THR B 91 REMARK 465 SER C 1 REMARK 465 THR C 2 REMARK 465 MET D 33 REMARK 465 LYS D 160 REMARK 465 LYS D 161 REMARK 465 GLY D 162 REMARK 465 GLU D 163 REMARK 465 ALA D 164 REMARK 465 GLU D 165 REMARK 465 LYS D 166 REMARK 465 LYS D 167 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 91 CD NE CZ NH1 NH2 REMARK 470 ARG A 143 NE CZ NH1 NH2 REMARK 470 ARG A 145 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 320 CE NZ REMARK 470 LYS A 324 CD CE NZ REMARK 470 LYS A 335 CD CE NZ REMARK 470 GLU A 364 CD OE1 OE2 REMARK 470 THR A 382 OG1 CG2 REMARK 470 SER A 383 OG REMARK 470 SER A 385 OG REMARK 470 LEU A 386 CG CD1 CD2 REMARK 470 GLU A 387 CG CD OE1 OE2 REMARK 470 ARG A 393 NE CZ NH1 NH2 REMARK 470 GLU A 399 CD OE1 OE2 REMARK 470 GLU A 424 CD OE1 OE2 REMARK 470 LYS A 450 CG CD CE NZ REMARK 470 LYS A 453 CG CD CE NZ REMARK 470 GLU B 42 CD OE1 OE2 REMARK 470 LYS B 47 CD CE NZ REMARK 470 LYS B 58 CE NZ REMARK 470 ILE C 3 CG1 CD1 REMARK 470 GLU C 4 CD OE1 OE2 REMARK 470 LYS C 8 CD CE NZ REMARK 470 LYS C 9 CG CD CE NZ REMARK 470 LYS C 18 CG CD CE NZ REMARK 470 GLN C 19 CG CD OE1 NE2 REMARK 470 GLU C 20 CG CD OE1 OE2 REMARK 470 GLU C 21 CD OE1 OE2 REMARK 470 ASN C 25 CG OD1 ND2 REMARK 470 GLU C 48 CD OE1 OE2 REMARK 470 GLU C 53 CG CD OE1 OE2 REMARK 470 GLU C 60 CG CD OE1 OE2 REMARK 470 LYS C 61 CE NZ REMARK 470 ILE C 69 CG1 CG2 CD1 REMARK 470 GLN C 76 CD OE1 NE2 REMARK 470 LYS D 37 CD CE NZ REMARK 470 LYS D 38 CE NZ REMARK 470 LYS D 54 CD CE NZ REMARK 470 LYS D 57 CD CE NZ REMARK 470 LYS D 82 CG CD CE NZ REMARK 470 GLU D 115 CG CD OE1 OE2 REMARK 470 LYS D 127 CG CD CE NZ REMARK 470 LYS D 154 CD CE NZ REMARK 470 GLU D 158 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 66 164.57 178.60 REMARK 500 ILE A 82 -73.48 -120.94 REMARK 500 TYR A 84 66.27 -103.55 REMARK 500 ARG A 292 89.08 -157.38 REMARK 500 SER A 379 179.98 76.61 REMARK 500 ALA A 380 33.88 -63.97 REMARK 500 THR A 382 -113.59 -160.43 REMARK 500 ALA A 384 -62.76 -108.61 REMARK 500 LEU A 386 -85.44 -59.21 REMARK 500 LYS A 450 0.30 -66.91 REMARK 500 GLU C 5 12.91 -63.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 289 0.21 SIDE CHAIN REMARK 500 ARG A 321 0.28 SIDE CHAIN REMARK 500 ARG B 41 0.27 SIDE CHAIN REMARK 500 ARG C 6 0.13 SIDE CHAIN REMARK 500 ARG D 47 0.15 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 8TVT A 56 454 UNP Q9Y697 NFS1_HUMAN 56 454 DBREF 8TVT B 1 91 UNP Q9HD34 LYRM4_HUMAN 1 91 DBREF 8TVT C 1 76 UNP A7ZKJ7 ACP_ECO24 2 77 DBREF 8TVT D 35 167 UNP Q9H1K1 ISCU_HUMAN 35 167 SEQADV 8TVT MET A 52 UNP Q9Y697 INITIATING METHIONINE SEQADV 8TVT GLY A 53 UNP Q9Y697 EXPRESSION TAG SEQADV 8TVT SER A 54 UNP Q9Y697 EXPRESSION TAG SEQADV 8TVT SER A 55 UNP Q9Y697 EXPRESSION TAG SEQADV 8TVT ALA B 11 UNP Q9HD34 SER 11 VARIANT SEQADV 8TVT MET D 33 UNP Q9H1K1 INITIATING METHIONINE SEQADV 8TVT ALA D 34 UNP Q9H1K1 EXPRESSION TAG SEQRES 1 A 403 MET GLY SER SER LEU ARG PRO LEU TYR MET ASP VAL GLN SEQRES 2 A 403 ALA THR THR PRO LEU ASP PRO ARG VAL LEU ASP ALA MET SEQRES 3 A 403 LEU PRO TYR LEU ILE ASN TYR TYR GLY ASN PRO HIS SER SEQRES 4 A 403 ARG THR HIS ALA TYR GLY TRP GLU SER GLU ALA ALA MET SEQRES 5 A 403 GLU ARG ALA ARG GLN GLN VAL ALA SER LEU ILE GLY ALA SEQRES 6 A 403 ASP PRO ARG GLU ILE ILE PHE THR SER GLY ALA THR GLU SEQRES 7 A 403 SER ASN ASN ILE ALA ILE LYS GLY VAL ALA ARG PHE TYR SEQRES 8 A 403 ARG SER ARG LYS LYS HIS LEU ILE THR THR GLN THR GLU SEQRES 9 A 403 HIS LYS CYS VAL LEU ASP SER CYS ARG SER LEU GLU ALA SEQRES 10 A 403 GLU GLY PHE GLN VAL THR TYR LEU PRO VAL GLN LYS SER SEQRES 11 A 403 GLY ILE ILE ASP LEU LYS GLU LEU GLU ALA ALA ILE GLN SEQRES 12 A 403 PRO ASP THR SER LEU VAL SER VAL MET THR VAL ASN ASN SEQRES 13 A 403 GLU ILE GLY VAL LYS GLN PRO ILE ALA GLU ILE GLY ARG SEQRES 14 A 403 ILE CYS SER SER ARG LYS VAL TYR PHE HIS THR ASP ALA SEQRES 15 A 403 ALA GLN ALA VAL GLY LYS ILE PRO LEU ASP VAL ASN ASP SEQRES 16 A 403 MET LYS ILE ASP LEU MET SER ILE SER GLY HIS LYS ILE SEQRES 17 A 403 TYR GLY PRO LYS GLY VAL GLY ALA ILE TYR ILE ARG ARG SEQRES 18 A 403 ARG PRO ARG VAL ARG VAL GLU ALA LEU GLN SER GLY GLY SEQRES 19 A 403 GLY GLN GLU ARG GLY MET ARG SER GLY THR VAL PRO THR SEQRES 20 A 403 PRO LEU VAL VAL GLY LEU GLY ALA ALA CYS GLU VAL ALA SEQRES 21 A 403 GLN GLN GLU MET GLU TYR ASP HIS LYS ARG ILE SER LYS SEQRES 22 A 403 LEU SER GLU ARG LEU ILE GLN ASN ILE MET LYS SER LEU SEQRES 23 A 403 PRO ASP VAL VAL MET ASN GLY ASP PRO LYS HIS HIS TYR SEQRES 24 A 403 PRO GLY CYS ILE ASN LEU SER PHE ALA TYR VAL GLU GLY SEQRES 25 A 403 GLU SER LEU LEU MET ALA LEU LYS ASP VAL ALA LEU SER SEQRES 26 A 403 SER GLY SER ALA CYS THR SER ALA SER LEU GLU PRO SER SEQRES 27 A 403 TYR VAL LEU ARG ALA ILE GLY THR ASP GLU ASP LEU ALA SEQRES 28 A 403 HIS SER SER ILE ARG PHE GLY ILE GLY ARG PHE THR THR SEQRES 29 A 403 GLU GLU GLU VAL ASP TYR THR VAL GLU LYS CYS ILE GLN SEQRES 30 A 403 HIS VAL LYS ARG LEU ARG GLU MET SER PRO LEU TRP GLU SEQRES 31 A 403 MET VAL GLN ASP GLY ILE ASP LEU LYS SER ILE LYS TRP SEQRES 1 B 91 MET ALA ALA SER SER ARG ALA GLN VAL LEU ALA LEU TYR SEQRES 2 B 91 ARG ALA MET LEU ARG GLU SER LYS ARG PHE SER ALA TYR SEQRES 3 B 91 ASN TYR ARG THR TYR ALA VAL ARG ARG ILE ARG ASP ALA SEQRES 4 B 91 PHE ARG GLU ASN LYS ASN VAL LYS ASP PRO VAL GLU ILE SEQRES 5 B 91 GLN THR LEU VAL ASN LYS ALA LYS ARG ASP LEU GLY VAL SEQRES 6 B 91 ILE ARG ARG GLN VAL HIS ILE GLY GLN LEU TYR SER THR SEQRES 7 B 91 ASP LYS LEU ILE ILE GLU ASN ARG ASP MET PRO ARG THR SEQRES 1 C 76 SER THR ILE GLU GLU ARG VAL LYS LYS ILE ILE GLY GLU SEQRES 2 C 76 GLN LEU GLY VAL LYS GLN GLU GLU VAL THR ASN ASN ALA SEQRES 3 C 76 SER PHE VAL GLU ASP LEU GLY ALA ASP SER LEU ASP THR SEQRES 4 C 76 VAL GLU LEU VAL MET ALA LEU GLU GLU GLU PHE ASP THR SEQRES 5 C 76 GLU ILE PRO ASP GLU GLU ALA GLU LYS ILE THR THR VAL SEQRES 6 C 76 GLN ALA ALA ILE ASP TYR ILE ASN GLY HIS GLN SEQRES 1 D 135 MET ALA TYR HIS LYS LYS VAL VAL ASP HIS TYR GLU ASN SEQRES 2 D 135 PRO ARG ASN VAL GLY SER LEU ASP LYS THR SER LYS ASN SEQRES 3 D 135 VAL GLY THR GLY LEU VAL GLY ALA PRO ALA CYS GLY ASP SEQRES 4 D 135 VAL MET LYS LEU GLN ILE GLN VAL ASP GLU LYS GLY LYS SEQRES 5 D 135 ILE VAL ASP ALA ARG PHE LYS THR PHE GLY CYS GLY SER SEQRES 6 D 135 ALA ILE ALA SER SER SER LEU ALA THR GLU TRP VAL LYS SEQRES 7 D 135 GLY LYS THR VAL GLU GLU ALA LEU THR ILE LYS ASN THR SEQRES 8 D 135 ASP ILE ALA LYS GLU LEU CYS LEU PRO PRO VAL LYS LEU SEQRES 9 D 135 HIS CYS SER MET LEU ALA GLU ASP ALA ILE LYS ALA ALA SEQRES 10 D 135 LEU ALA ASP TYR LYS LEU LYS GLN GLU PRO LYS LYS GLY SEQRES 11 D 135 GLU ALA GLU LYS LYS HET EDO A 501 4 HET EDO A 502 4 HET PLP A 503 15 HET LPH A 504 8 HET GOL A 505 6 HET GOL A 506 6 HET EDO A 507 4 HET EDO A 508 4 HET EDO A 509 4 HET EDO A 510 4 HET EDO A 511 4 HET EDO A 512 4 HET EDO A 513 4 HET EDO A 514 4 HET EDO A 515 4 HET PEG A 516 7 HET PG4 A 517 13 HET PG4 A 518 13 HET PEG A 519 7 HET EDO A 520 4 HET P15 A 521 20 HET PEG A 522 7 HET EDO A 523 4 HET PEG A 524 7 HET DTT A 525 8 HET EDO A 526 4 HET EDO A 527 4 HET EDO A 528 4 HET EDO A 529 4 HET PGE A 530 10 HET EDO A 531 4 HET EDO A 532 4 HET EDO A 533 4 HET PEG A 534 7 HET PEG A 535 7 HET EDO B 101 4 HET EDO B 102 4 HET PEG B 103 7 HET EDO B 104 4 HET PEG B 105 7 HET EDO B 106 4 HET EDO B 107 4 HET EDT B 108 20 HET EDO B 109 4 HET 8Q1 C 301 34 HET MES C 302 12 HET EDO C 303 4 HET EDO C 304 4 HET EDO D 201 4 HET 1PE D 202 16 HET GOL D 203 6 HET EDO D 204 4 HETNAM EDO 1,2-ETHANEDIOL HETNAM PLP PYRIDOXAL-5'-PHOSPHATE HETNAM LPH L-PROPARGYLGLYCINE HETNAM GOL GLYCEROL HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM PG4 TETRAETHYLENE GLYCOL HETNAM P15 2,5,8,11,14,17-HEXAOXANONADECAN-19-OL HETNAM DTT 2,3-DIHYDROXY-1,4-DITHIOBUTANE HETNAM PGE TRIETHYLENE GLYCOL HETNAM EDT {[-(BIS-CARBOXYMETHYL-AMINO)-ETHYL]-CARBOXYMETHYL- HETNAM 2 EDT AMINO}-ACETIC ACID HETNAM 8Q1 S-[2-({N-[(2R)-2-HYDROXY-3,3-DIMETHYL-4-(PHOSPHONOOXY) HETNAM 2 8Q1 BUTANOYL]-BETA-ALANYL}AMINO)ETHYL] DODECANETHIOATE HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID HETNAM 1PE PENTAETHYLENE GLYCOL HETSYN EDO ETHYLENE GLYCOL HETSYN PLP VITAMIN B6 PHOSPHATE HETSYN LPH (2S)-2-AMINOPENT-4-YNOIC ACID HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN DTT 1,4-DITHIOTHREITOL HETSYN 8Q1 S-DODECANOYL-4'-PHOSPHOPANTETHEINE HETSYN 1PE PEG400 FORMUL 5 EDO 30(C2 H6 O2) FORMUL 7 PLP C8 H10 N O6 P FORMUL 8 LPH C5 H7 N O2 FORMUL 9 GOL 3(C3 H8 O3) FORMUL 20 PEG 8(C4 H10 O3) FORMUL 21 PG4 2(C8 H18 O5) FORMUL 25 P15 C13 H28 O7 FORMUL 29 DTT C4 H10 O2 S2 FORMUL 34 PGE C6 H14 O4 FORMUL 47 EDT C10 H16 N2 O8 FORMUL 49 8Q1 C23 H45 N2 O8 P S FORMUL 50 MES C6 H13 N O4 S FORMUL 54 1PE C10 H22 O6 FORMUL 57 HOH *414(H2 O) HELIX 1 AA1 ASP A 70 ASN A 83 1 14 HELIX 2 AA2 HIS A 93 GLY A 115 1 23 HELIX 3 AA3 ASP A 117 ARG A 119 5 3 HELIX 4 AA4 GLY A 126 TYR A 142 1 17 HELIX 5 AA5 HIS A 156 GLU A 169 1 14 HELIX 6 AA6 ASP A 185 ILE A 193 1 9 HELIX 7 AA7 PRO A 214 ARG A 225 1 12 HELIX 8 AA8 HIS A 257 ILE A 259 5 3 HELIX 9 AA9 GLN A 287 MET A 291 5 5 HELIX 10 AB1 PRO A 297 LEU A 337 1 41 HELIX 11 AB2 GLU A 362 LEU A 370 1 9 HELIX 12 AB3 SER A 389 ILE A 395 1 7 HELIX 13 AB4 ASP A 398 HIS A 403 1 6 HELIX 14 AB5 THR A 415 MET A 436 1 22 HELIX 15 AB6 SER A 437 ASP A 445 1 9 HELIX 16 AB7 ASP A 448 ILE A 452 5 5 HELIX 17 AB8 SER B 4 LYS B 21 1 18 HELIX 18 AB9 ALA B 25 ASN B 43 1 19 HELIX 19 AC1 ASP B 48 TYR B 76 1 29 HELIX 20 AC2 LEU B 81 ASN B 85 5 5 HELIX 21 AC3 ILE C 3 GLU C 4 5 2 HELIX 22 AC4 GLU C 5 GLY C 16 1 12 HELIX 23 AC5 LYS C 18 VAL C 22 5 5 HELIX 24 AC6 ASP C 35 ASP C 51 1 17 HELIX 25 AC7 PRO C 55 GLU C 60 1 6 HELIX 26 AC8 THR C 64 GLY C 74 1 11 HELIX 27 AC9 HIS D 36 ASN D 45 1 10 HELIX 28 AD1 PRO D 67 GLY D 70 5 4 HELIX 29 AD2 CYS D 95 LYS D 110 1 16 HELIX 30 AD3 THR D 113 LEU D 118 1 6 HELIX 31 AD4 LYS D 121 CYS D 130 1 10 HELIX 32 AD5 PRO D 132 VAL D 134 5 3 HELIX 33 AD6 LYS D 135 GLU D 158 1 24 SHEET 1 AA1 2 LEU A 59 TYR A 60 0 SHEET 2 AA1 2 VAL A 373 ALA A 374 1 O ALA A 374 N LEU A 59 SHEET 1 AA2 7 ILE A 121 THR A 124 0 SHEET 2 AA2 7 GLY A 266 ILE A 270 -1 O ILE A 268 N ILE A 122 SHEET 3 AA2 7 LEU A 251 SER A 255 -1 N ILE A 254 O ALA A 267 SHEET 4 AA2 7 TYR A 228 ASP A 232 1 N THR A 231 O LEU A 251 SHEET 5 AA2 7 THR A 197 SER A 201 1 N VAL A 200 O HIS A 230 SHEET 6 AA2 7 HIS A 148 THR A 152 1 N HIS A 148 O SER A 198 SHEET 7 AA2 7 GLN A 172 LEU A 176 1 O LEU A 176 N THR A 151 SHEET 1 AA3 3 VAL A 340 MET A 342 0 SHEET 2 AA3 3 CYS A 353 PHE A 358 -1 O SER A 357 N VAL A 341 SHEET 3 AA3 3 SER A 405 GLY A 409 -1 O PHE A 408 N ILE A 354 SHEET 1 AA4 3 VAL D 59 ALA D 66 0 SHEET 2 AA4 3 ASP D 71 VAL D 79 -1 O LEU D 75 N GLY D 62 SHEET 3 AA4 3 ILE D 85 PHE D 93 -1 O ASP D 87 N GLN D 78 LINK C4A PLP A 503 N LPH A 504 1555 1555 1.44 LINK OG SER C 36 P24 8Q1 C 301 1555 1555 1.58 CISPEP 1 ARG A 273 PRO A 274 0 -10.20 CRYST1 86.270 86.270 246.030 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011592 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011592 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004065 0.00000