HEADER ANTIVIRAL PROTEIN 24-AUG-23 8TXQ TITLE CRYOEM STRUCTURE OF NON-NEUTRALIZING ANTIBODY CBH-4B IN COMPLEX WITH TITLE 2 HEPATITIS C VIRUS ENVELOPE GLYCOPROTEIN E2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CBH-4B HEAVY CHAIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: CBH-4B LIGHT CHAIN; COMPND 8 CHAIN: B, E; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: ENVELOPE GLYCOPROTEIN E2; COMPND 12 CHAIN: C; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 13 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: HEPATITIS C VIRUS (ISOLATE 1); SOURCE 17 ORGANISM_TAXID: 11104; SOURCE 18 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 19 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 20 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS HCV, E2, FAB, ANTIVIRAL, COMPLEX, ANTIVIRAL PROTEIN EXPDTA ELECTRON MICROSCOPY AUTHOR S.SHAHID,J.LIQUN,Y.LIU,S.S.HASAN,R.A.MARIUZZA REVDAT 1 28-AUG-24 8TXQ 0 JRNL AUTH S.SHAHID,J.LIQUN,Y.LIU,S.S.HASAN,R.A.MARIUZZA JRNL TITL CRYOEM STRUCTURE OF NON-NEUTRALIZING ANTIBODY CBH-4B IN JRNL TITL 2 COMPLEX WITH HEPATITIS C VIRUS ENVELOPE GLYCOPROTEIN E2 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : CRYOSPARC, CRYOSPARC, CRYOSPARC REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : AB INITIO MODEL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.400 REMARK 3 NUMBER OF PARTICLES : 200762 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 8TXQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-AUG-23. REMARK 100 THE DEPOSITION ID IS D_1000276873. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : HCV E2-CBH-4B COMPLEX REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 0.50 REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 8.00 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : 7168 REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 (6K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1000.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2500.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.70 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 5000.00 REMARK 245 ILLUMINATION MODE : OTHER REMARK 245 NOMINAL MAGNIFICATION : 81000 REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -17 REMARK 465 ASP A -16 REMARK 465 TRP A -15 REMARK 465 THR A -14 REMARK 465 TRP A -13 REMARK 465 ARG A -12 REMARK 465 PHE A -11 REMARK 465 LEU A -10 REMARK 465 PHE A -9 REMARK 465 VAL A -8 REMARK 465 VAL A -7 REMARK 465 ALA A -6 REMARK 465 ALA A -5 REMARK 465 ALA A -4 REMARK 465 THR A -3 REMARK 465 VAL A -2 REMARK 465 GLN A -1 REMARK 465 SER A 0 REMARK 465 SER A 221 REMARK 465 CYS A 222 REMARK 465 ASP A 223 REMARK 465 LYS A 224 REMARK 465 THR A 225 REMARK 465 ALA A 226 REMARK 465 GLY A 227 REMARK 465 TRP A 228 REMARK 465 SER A 229 REMARK 465 HIS A 230 REMARK 465 PRO A 231 REMARK 465 GLN A 232 REMARK 465 PHE A 233 REMARK 465 GLU A 234 REMARK 465 LYS A 235 REMARK 465 MET B -18 REMARK 465 GLU B -17 REMARK 465 THR B -16 REMARK 465 PRO B -15 REMARK 465 ALA B -14 REMARK 465 GLN B -13 REMARK 465 LEU B -12 REMARK 465 LEU B -11 REMARK 465 PHE B -10 REMARK 465 LEU B -9 REMARK 465 LEU B -8 REMARK 465 LEU B -7 REMARK 465 LEU B -6 REMARK 465 TRP B -5 REMARK 465 LEU B -4 REMARK 465 PRO B -3 REMARK 465 THR B -2 REMARK 465 THR B -1 REMARK 465 GLY B 0 REMARK 465 GLU B 1 REMARK 465 ARG B 108 REMARK 465 THR B 109 REMARK 465 VAL B 110 REMARK 465 ALA B 111 REMARK 465 ALA B 112 REMARK 465 PRO B 113 REMARK 465 SER B 114 REMARK 465 VAL B 115 REMARK 465 PHE B 116 REMARK 465 ILE B 117 REMARK 465 PHE B 118 REMARK 465 PRO B 119 REMARK 465 PRO B 120 REMARK 465 SER B 121 REMARK 465 ASP B 122 REMARK 465 GLU B 123 REMARK 465 GLN B 124 REMARK 465 LEU B 125 REMARK 465 LYS B 126 REMARK 465 SER B 127 REMARK 465 GLY B 128 REMARK 465 THR B 129 REMARK 465 ALA B 130 REMARK 465 SER B 131 REMARK 465 VAL B 132 REMARK 465 VAL B 133 REMARK 465 CYS B 134 REMARK 465 LEU B 135 REMARK 465 LEU B 136 REMARK 465 ASN B 137 REMARK 465 ASN B 138 REMARK 465 PHE B 139 REMARK 465 TYR B 140 REMARK 465 PRO B 141 REMARK 465 ARG B 142 REMARK 465 GLU B 143 REMARK 465 ALA B 144 REMARK 465 LYS B 145 REMARK 465 VAL B 146 REMARK 465 GLN B 147 REMARK 465 TRP B 148 REMARK 465 LYS B 149 REMARK 465 VAL B 150 REMARK 465 ASP B 151 REMARK 465 ASN B 152 REMARK 465 ALA B 153 REMARK 465 LEU B 154 REMARK 465 GLN B 155 REMARK 465 SER B 156 REMARK 465 GLY B 157 REMARK 465 ASN B 158 REMARK 465 SER B 159 REMARK 465 GLN B 160 REMARK 465 GLU B 161 REMARK 465 SER B 162 REMARK 465 VAL B 163 REMARK 465 THR B 164 REMARK 465 GLU B 165 REMARK 465 GLN B 166 REMARK 465 ASP B 167 REMARK 465 SER B 168 REMARK 465 LYS B 169 REMARK 465 ASP B 170 REMARK 465 SER B 171 REMARK 465 THR B 172 REMARK 465 TYR B 173 REMARK 465 SER B 174 REMARK 465 LEU B 175 REMARK 465 SER B 176 REMARK 465 SER B 177 REMARK 465 THR B 178 REMARK 465 LEU B 179 REMARK 465 THR B 180 REMARK 465 LEU B 181 REMARK 465 SER B 182 REMARK 465 LYS B 183 REMARK 465 ALA B 184 REMARK 465 ASP B 185 REMARK 465 TYR B 186 REMARK 465 GLU B 187 REMARK 465 LYS B 188 REMARK 465 HIS B 189 REMARK 465 LYS B 190 REMARK 465 VAL B 191 REMARK 465 TYR B 192 REMARK 465 ALA B 193 REMARK 465 CYS B 194 REMARK 465 GLU B 195 REMARK 465 VAL B 196 REMARK 465 THR B 197 REMARK 465 HIS B 198 REMARK 465 GLN B 199 REMARK 465 GLY B 200 REMARK 465 LEU B 201 REMARK 465 SER B 202 REMARK 465 SER B 203 REMARK 465 PRO B 204 REMARK 465 VAL B 205 REMARK 465 THR B 206 REMARK 465 LYS B 207 REMARK 465 SER B 208 REMARK 465 PHE B 209 REMARK 465 ASN B 210 REMARK 465 ARG B 211 REMARK 465 GLY B 212 REMARK 465 GLU B 213 REMARK 465 CYS B 214 REMARK 465 MET C 363 REMARK 465 GLU C 364 REMARK 465 THR C 365 REMARK 465 ASP C 366 REMARK 465 THR C 367 REMARK 465 LEU C 368 REMARK 465 LEU C 369 REMARK 465 LEU C 370 REMARK 465 TRP C 371 REMARK 465 VAL C 372 REMARK 465 LEU C 373 REMARK 465 LEU C 374 REMARK 465 LEU C 375 REMARK 465 TRP C 376 REMARK 465 VAL C 377 REMARK 465 PRO C 378 REMARK 465 GLY C 379 REMARK 465 SER C 380 REMARK 465 THR C 381 REMARK 465 GLY C 382 REMARK 465 ASP C 383 REMARK 465 SER C 384 REMARK 465 THR C 385 REMARK 465 HIS C 386 REMARK 465 VAL C 387 REMARK 465 THR C 388 REMARK 465 GLY C 389 REMARK 465 GLY C 390 REMARK 465 THR C 391 REMARK 465 ALA C 392 REMARK 465 SER C 393 REMARK 465 HIS C 394 REMARK 465 THR C 395 REMARK 465 THR C 396 REMARK 465 ARG C 397 REMARK 465 HIS C 398 REMARK 465 PHE C 399 REMARK 465 ALA C 400 REMARK 465 SER C 401 REMARK 465 LEU C 402 REMARK 465 PHE C 403 REMARK 465 SER C 404 REMARK 465 SER C 405 REMARK 465 GLY C 406 REMARK 465 ALA C 407 REMARK 465 SER C 408 REMARK 465 GLN C 409 REMARK 465 ARG C 410 REMARK 465 VAL C 411 REMARK 465 GLN C 412 REMARK 465 LEU C 413 REMARK 465 ILE C 414 REMARK 465 ASN C 415 REMARK 465 THR C 416 REMARK 465 ASN C 417 REMARK 465 GLY C 418 REMARK 465 SER C 419 REMARK 465 TRP C 420 REMARK 465 HIS C 421 REMARK 465 ILE C 422 REMARK 465 ASN C 423 REMARK 465 ARG C 424 REMARK 465 THR C 425 REMARK 465 ALA C 426 REMARK 465 LEU C 427 REMARK 465 ASN C 428 REMARK 465 CYS C 429 REMARK 465 ASN C 430 REMARK 465 ASP C 431 REMARK 465 SER C 432 REMARK 465 LEU C 433 REMARK 465 HIS C 434 REMARK 465 THR C 435 REMARK 465 GLY C 436 REMARK 465 PHE C 437 REMARK 465 LEU C 438 REMARK 465 ALA C 439 REMARK 465 ALA C 440 REMARK 465 LEU C 441 REMARK 465 PHE C 442 REMARK 465 TYR C 443 REMARK 465 THR C 444 REMARK 465 HIS C 445 REMARK 465 LYS C 446 REMARK 465 PHE C 447 REMARK 465 ASN C 448 REMARK 465 ALA C 449 REMARK 465 SER C 450 REMARK 465 GLY C 451 REMARK 465 GLY C 523 REMARK 465 ALA C 524 REMARK 465 PRO C 525 REMARK 465 THR C 526 REMARK 465 TYR C 527 REMARK 465 THR C 528 REMARK 465 TRP C 529 REMARK 465 GLY C 530 REMARK 465 GLU C 531 REMARK 465 ASN C 532 REMARK 465 GLU C 533 REMARK 465 THR C 534 REMARK 465 ASP C 535 REMARK 465 VAL C 536 REMARK 465 LEU C 537 REMARK 465 GLY C 647 REMARK 465 HIS C 648 REMARK 465 HIS C 649 REMARK 465 HIS C 650 REMARK 465 HIS C 651 REMARK 465 HIS C 652 REMARK 465 HIS C 653 REMARK 465 MET E -18 REMARK 465 GLU E -17 REMARK 465 THR E -16 REMARK 465 PRO E -15 REMARK 465 ALA E -14 REMARK 465 GLN E -13 REMARK 465 LEU E -12 REMARK 465 LEU E -11 REMARK 465 PHE E -10 REMARK 465 LEU E -9 REMARK 465 LEU E -8 REMARK 465 LEU E -7 REMARK 465 LEU E -6 REMARK 465 TRP E -5 REMARK 465 LEU E -4 REMARK 465 PRO E -3 REMARK 465 THR E -2 REMARK 465 THR E -1 REMARK 465 GLY E 0 REMARK 465 GLU E 1 REMARK 465 SER E 2 REMARK 465 VAL E 3 REMARK 465 LEU E 4 REMARK 465 THR E 5 REMARK 465 GLN E 6 REMARK 465 SER E 7 REMARK 465 PRO E 8 REMARK 465 GLY E 9 REMARK 465 THR E 10 REMARK 465 LEU E 11 REMARK 465 SER E 12 REMARK 465 LEU E 13 REMARK 465 SER E 14 REMARK 465 PRO E 15 REMARK 465 GLY E 16 REMARK 465 GLU E 17 REMARK 465 ARG E 18 REMARK 465 ALA E 19 REMARK 465 THR E 20 REMARK 465 LEU E 21 REMARK 465 SER E 22 REMARK 465 CYS E 23 REMARK 465 ARG E 24 REMARK 465 ALA E 25 REMARK 465 SER E 26 REMARK 465 GLN E 27 REMARK 465 SER E 28 REMARK 465 VAL E 29 REMARK 465 SER E 30 REMARK 465 SER E 31 REMARK 465 THR E 32 REMARK 465 TYR E 33 REMARK 465 VAL E 34 REMARK 465 ALA E 35 REMARK 465 TRP E 36 REMARK 465 TYR E 37 REMARK 465 GLN E 38 REMARK 465 GLN E 39 REMARK 465 LYS E 40 REMARK 465 PRO E 41 REMARK 465 GLY E 42 REMARK 465 GLN E 43 REMARK 465 ALA E 44 REMARK 465 PRO E 45 REMARK 465 ARG E 46 REMARK 465 LEU E 47 REMARK 465 LEU E 48 REMARK 465 ILE E 49 REMARK 465 TYR E 50 REMARK 465 ASP E 51 REMARK 465 ALA E 52 REMARK 465 SER E 53 REMARK 465 ILE E 54 REMARK 465 ARG E 55 REMARK 465 ALA E 56 REMARK 465 THR E 57 REMARK 465 GLY E 58 REMARK 465 VAL E 59 REMARK 465 PRO E 60 REMARK 465 ASP E 61 REMARK 465 ARG E 62 REMARK 465 PHE E 63 REMARK 465 SER E 64 REMARK 465 GLY E 65 REMARK 465 GLY E 66 REMARK 465 GLY E 67 REMARK 465 SER E 68 REMARK 465 GLY E 69 REMARK 465 THR E 70 REMARK 465 ASP E 71 REMARK 465 PHE E 72 REMARK 465 THR E 73 REMARK 465 LEU E 74 REMARK 465 THR E 75 REMARK 465 ILE E 76 REMARK 465 SER E 77 REMARK 465 ARG E 78 REMARK 465 LEU E 79 REMARK 465 GLU E 80 REMARK 465 PRO E 81 REMARK 465 GLU E 82 REMARK 465 ASP E 83 REMARK 465 PHE E 84 REMARK 465 ALA E 85 REMARK 465 VAL E 86 REMARK 465 TYR E 87 REMARK 465 TYR E 88 REMARK 465 CYS E 89 REMARK 465 GLN E 90 REMARK 465 GLN E 91 REMARK 465 TYR E 92 REMARK 465 GLY E 93 REMARK 465 GLY E 94 REMARK 465 SER E 95 REMARK 465 PRO E 96 REMARK 465 PHE E 97 REMARK 465 PHE E 98 REMARK 465 GLY E 99 REMARK 465 GLY E 100 REMARK 465 GLY E 101 REMARK 465 THR E 102 REMARK 465 LYS E 103 REMARK 465 VAL E 104 REMARK 465 GLU E 105 REMARK 465 ILE E 106 REMARK 465 LYS E 107 REMARK 465 ARG E 108 REMARK 465 THR E 109 REMARK 465 CYS E 214 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 66 CG OD1 OD2 REMARK 470 GLU A 74 CG CD OE1 OE2 REMARK 470 SER A 138 OG REMARK 470 THR A 197 OG1 CG2 REMARK 470 LYS B 107 O CG CD CE NZ REMARK 470 GLU C 454 CG CD OE1 OE2 REMARK 470 ARG C 455 CG CD NE CZ NH1 NH2 REMARK 470 HIS C 458 CG ND1 CD2 CE1 NE2 REMARK 470 ARG C 460 CG CD NE CZ NH1 NH2 REMARK 470 TRP C 469 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP C 469 CZ3 CH2 REMARK 470 GLU C 476 CG CD OE1 OE2 REMARK 470 HIS C 478 CG ND1 CD2 CE1 NE2 REMARK 470 SER C 480 OG REMARK 470 ASP C 481 CG OD1 OD2 REMARK 470 GLN C 482 CG CD OE1 NE2 REMARK 470 ARG C 483 CG CD NE CZ NH1 NH2 REMARK 470 VAL C 502 CG1 CG2 REMARK 470 ARG C 521 CG CD NE CZ NH1 NH2 REMARK 470 PHE C 522 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASN C 541 CG OD1 ND2 REMARK 470 GLN C 546 CG CD OE1 NE2 REMARK 470 ASP C 584 CG OD1 OD2 REMARK 470 ILE C 646 CG1 CG2 CD1 REMARK 470 VAL E 110 CG1 CG2 REMARK 470 LYS E 188 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 101 OG SER A 108 2.01 REMARK 500 OG SER E 208 OD1 ASN E 210 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 53 44.14 -78.42 REMARK 500 LYS A 135 -5.46 74.28 REMARK 500 ASP A 150 62.04 62.73 REMARK 500 ALA A 164 175.65 178.85 REMARK 500 PRO B 15 153.53 -49.72 REMARK 500 GLN B 27 -53.66 -120.01 REMARK 500 SER B 30 -0.79 78.68 REMARK 500 ALA B 52 -5.39 74.35 REMARK 500 ALA B 85 -175.27 -172.06 REMARK 500 HIS C 458 34.81 -141.06 REMARK 500 PHE C 465 -179.44 -66.87 REMARK 500 ALA C 466 156.29 71.82 REMARK 500 SER C 512 109.56 -51.24 REMARK 500 ASN C 548 -145.26 69.52 REMARK 500 SER C 557 -142.87 63.52 REMARK 500 CYS C 581 109.25 -47.96 REMARK 500 ASP C 584 -103.27 43.59 REMARK 500 ASP E 151 -99.91 52.60 REMARK 500 SER E 168 -4.47 72.63 REMARK 500 SER E 203 149.19 67.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-41703 RELATED DB: EMDB REMARK 900 CRYOEM STRUCTURE OF NON-NEUTRALIZING ANTIBODY CBH-4B IN COMPLEX REMARK 900 WITH HEPATITIS C VIRUS ENVELOPE GLYCOPROTEIN E2 DBREF 8TXQ A -17 235 PDB 8TXQ 8TXQ -17 235 DBREF 8TXQ B -18 214 PDB 8TXQ 8TXQ -18 214 DBREF1 8TXQ C 384 645 UNP A0A2P0NE18_9HEPC DBREF2 8TXQ C A0A2P0NE18 214 475 DBREF 8TXQ E -18 214 PDB 8TXQ 8TXQ -18 214 SEQADV 8TXQ MET C 363 UNP A0A2P0NE1 INITIATING METHIONINE SEQADV 8TXQ GLU C 364 UNP A0A2P0NE1 EXPRESSION TAG SEQADV 8TXQ THR C 365 UNP A0A2P0NE1 EXPRESSION TAG SEQADV 8TXQ ASP C 366 UNP A0A2P0NE1 EXPRESSION TAG SEQADV 8TXQ THR C 367 UNP A0A2P0NE1 EXPRESSION TAG SEQADV 8TXQ LEU C 368 UNP A0A2P0NE1 EXPRESSION TAG SEQADV 8TXQ LEU C 369 UNP A0A2P0NE1 EXPRESSION TAG SEQADV 8TXQ LEU C 370 UNP A0A2P0NE1 EXPRESSION TAG SEQADV 8TXQ TRP C 371 UNP A0A2P0NE1 EXPRESSION TAG SEQADV 8TXQ VAL C 372 UNP A0A2P0NE1 EXPRESSION TAG SEQADV 8TXQ LEU C 373 UNP A0A2P0NE1 EXPRESSION TAG SEQADV 8TXQ LEU C 374 UNP A0A2P0NE1 EXPRESSION TAG SEQADV 8TXQ LEU C 375 UNP A0A2P0NE1 EXPRESSION TAG SEQADV 8TXQ TRP C 376 UNP A0A2P0NE1 EXPRESSION TAG SEQADV 8TXQ VAL C 377 UNP A0A2P0NE1 EXPRESSION TAG SEQADV 8TXQ PRO C 378 UNP A0A2P0NE1 EXPRESSION TAG SEQADV 8TXQ GLY C 379 UNP A0A2P0NE1 EXPRESSION TAG SEQADV 8TXQ SER C 380 UNP A0A2P0NE1 EXPRESSION TAG SEQADV 8TXQ THR C 381 UNP A0A2P0NE1 EXPRESSION TAG SEQADV 8TXQ GLY C 382 UNP A0A2P0NE1 EXPRESSION TAG SEQADV 8TXQ ASP C 383 UNP A0A2P0NE1 EXPRESSION TAG SEQADV 8TXQ ILE C 646 UNP A0A2P0NE1 EXPRESSION TAG SEQADV 8TXQ GLY C 647 UNP A0A2P0NE1 EXPRESSION TAG SEQADV 8TXQ HIS C 648 UNP A0A2P0NE1 EXPRESSION TAG SEQADV 8TXQ HIS C 649 UNP A0A2P0NE1 EXPRESSION TAG SEQADV 8TXQ HIS C 650 UNP A0A2P0NE1 EXPRESSION TAG SEQADV 8TXQ HIS C 651 UNP A0A2P0NE1 EXPRESSION TAG SEQADV 8TXQ HIS C 652 UNP A0A2P0NE1 EXPRESSION TAG SEQADV 8TXQ HIS C 653 UNP A0A2P0NE1 EXPRESSION TAG SEQRES 1 A 253 MET ASP TRP THR TRP ARG PHE LEU PHE VAL VAL ALA ALA SEQRES 2 A 253 ALA THR VAL GLN SER GLN ILE GLN LEU VAL GLN SER GLY SEQRES 3 A 253 ALA GLU VAL LYS LYS PRO GLY SER SER VAL LYS VAL SER SEQRES 4 A 253 CYS ARG ALA SER GLY GLY SER PHE GLY THR TYR GLY ILE SEQRES 5 A 253 THR TRP VAL ARG GLN ALA PRO GLY GLN GLY LEU GLU TRP SEQRES 6 A 253 VAL GLY GLY ILE VAL PRO LEU PHE ASP ARG PRO ASN TYR SEQRES 7 A 253 ALA GLN LYS PHE GLN ASP ARG VAL ALA ILE THR ALA ASP SEQRES 8 A 253 GLU SER THR SER THR ALA TYR MET GLU LEU SER SER LEU SEQRES 9 A 253 ARG PHE ASP ASP THR ALA VAL TYR TYR CYS ALA ARG GLU SEQRES 10 A 253 ALA ASP ILE VAL VAL GLY GLY SER SER TYR PHE ASP SER SEQRES 11 A 253 TRP GLY GLN GLY THR LEU VAL THR VAL THR LYS GLY PRO SEQRES 12 A 253 SER VAL PHE PRO LEU ALA PRO SER SER LYS SER THR SER SEQRES 13 A 253 GLY GLY THR ALA ALA LEU GLY CYS LEU VAL LYS ASP TYR SEQRES 14 A 253 PHE PRO GLU PRO VAL THR VAL SER TRP ASN SER GLY ALA SEQRES 15 A 253 LEU THR SER GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SEQRES 16 A 253 SER SER GLY LEU TYR SER LEU SER SER VAL VAL THR VAL SEQRES 17 A 253 PRO SER SER SER LEU GLY THR GLN THR TYR ILE CYS ASN SEQRES 18 A 253 VAL ASN HIS LYS PRO SER ASN THR LYS VAL ASP LYS ARG SEQRES 19 A 253 VAL GLU PRO LYS SER CYS ASP LYS THR ALA GLY TRP SER SEQRES 20 A 253 HIS PRO GLN PHE GLU LYS SEQRES 1 B 233 MET GLU THR PRO ALA GLN LEU LEU PHE LEU LEU LEU LEU SEQRES 2 B 233 TRP LEU PRO THR THR GLY GLU SER VAL LEU THR GLN SER SEQRES 3 B 233 PRO GLY THR LEU SER LEU SER PRO GLY GLU ARG ALA THR SEQRES 4 B 233 LEU SER CYS ARG ALA SER GLN SER VAL SER SER THR TYR SEQRES 5 B 233 VAL ALA TRP TYR GLN GLN LYS PRO GLY GLN ALA PRO ARG SEQRES 6 B 233 LEU LEU ILE TYR ASP ALA SER ILE ARG ALA THR GLY VAL SEQRES 7 B 233 PRO ASP ARG PHE SER GLY GLY GLY SER GLY THR ASP PHE SEQRES 8 B 233 THR LEU THR ILE SER ARG LEU GLU PRO GLU ASP PHE ALA SEQRES 9 B 233 VAL TYR TYR CYS GLN GLN TYR GLY GLY SER PRO PHE PHE SEQRES 10 B 233 GLY GLY GLY THR LYS VAL GLU ILE LYS ARG THR VAL ALA SEQRES 11 B 233 ALA PRO SER VAL PHE ILE PHE PRO PRO SER ASP GLU GLN SEQRES 12 B 233 LEU LYS SER GLY THR ALA SER VAL VAL CYS LEU LEU ASN SEQRES 13 B 233 ASN PHE TYR PRO ARG GLU ALA LYS VAL GLN TRP LYS VAL SEQRES 14 B 233 ASP ASN ALA LEU GLN SER GLY ASN SER GLN GLU SER VAL SEQRES 15 B 233 THR GLU GLN ASP SER LYS ASP SER THR TYR SER LEU SER SEQRES 16 B 233 SER THR LEU THR LEU SER LYS ALA ASP TYR GLU LYS HIS SEQRES 17 B 233 LYS VAL TYR ALA CYS GLU VAL THR HIS GLN GLY LEU SER SEQRES 18 B 233 SER PRO VAL THR LYS SER PHE ASN ARG GLY GLU CYS SEQRES 1 C 291 MET GLU THR ASP THR LEU LEU LEU TRP VAL LEU LEU LEU SEQRES 2 C 291 TRP VAL PRO GLY SER THR GLY ASP SER THR HIS VAL THR SEQRES 3 C 291 GLY GLY THR ALA SER HIS THR THR ARG HIS PHE ALA SER SEQRES 4 C 291 LEU PHE SER SER GLY ALA SER GLN ARG VAL GLN LEU ILE SEQRES 5 C 291 ASN THR ASN GLY SER TRP HIS ILE ASN ARG THR ALA LEU SEQRES 6 C 291 ASN CYS ASN ASP SER LEU HIS THR GLY PHE LEU ALA ALA SEQRES 7 C 291 LEU PHE TYR THR HIS LYS PHE ASN ALA SER GLY CYS PRO SEQRES 8 C 291 GLU ARG MET ALA HIS CYS ARG PRO ILE ASP GLU PHE ALA SEQRES 9 C 291 GLN GLY TRP GLY PRO ILE THR TYR ALA GLU GLY HIS GLY SEQRES 10 C 291 SER ASP GLN ARG PRO TYR CYS TRP HIS TYR ALA PRO ARG SEQRES 11 C 291 GLN CYS GLY THR ILE PRO ALA SER GLN VAL CYS GLY PRO SEQRES 12 C 291 VAL TYR CYS PHE THR PRO SER PRO VAL VAL VAL GLY THR SEQRES 13 C 291 THR ASP ARG PHE GLY ALA PRO THR TYR THR TRP GLY GLU SEQRES 14 C 291 ASN GLU THR ASP VAL LEU ILE LEU ASN ASN THR ARG PRO SEQRES 15 C 291 PRO GLN GLY ASN TRP PHE GLY CYS THR TRP MET ASN SER SEQRES 16 C 291 THR GLY PHE THR LYS THR CYS GLY GLY PRO PRO CYS ASN SEQRES 17 C 291 ILE GLY GLY VAL GLY ASN ASN THR LEU THR CYS PRO THR SEQRES 18 C 291 ASP CYS PHE ARG LYS HIS PRO GLU ALA THR TYR THR LYS SEQRES 19 C 291 CYS GLY SER GLY PRO TRP LEU THR PRO ARG CYS LEU VAL SEQRES 20 C 291 ASP TYR PRO TYR ARG LEU TRP HIS TYR PRO CYS THR VAL SEQRES 21 C 291 ASN PHE THR ILE PHE LYS VAL ARG MET TYR VAL GLY GLY SEQRES 22 C 291 VAL GLU HIS ARG LEU ASN ALA ALA CYS ASN ILE GLY HIS SEQRES 23 C 291 HIS HIS HIS HIS HIS SEQRES 1 E 233 MET GLU THR PRO ALA GLN LEU LEU PHE LEU LEU LEU LEU SEQRES 2 E 233 TRP LEU PRO THR THR GLY GLU SER VAL LEU THR GLN SER SEQRES 3 E 233 PRO GLY THR LEU SER LEU SER PRO GLY GLU ARG ALA THR SEQRES 4 E 233 LEU SER CYS ARG ALA SER GLN SER VAL SER SER THR TYR SEQRES 5 E 233 VAL ALA TRP TYR GLN GLN LYS PRO GLY GLN ALA PRO ARG SEQRES 6 E 233 LEU LEU ILE TYR ASP ALA SER ILE ARG ALA THR GLY VAL SEQRES 7 E 233 PRO ASP ARG PHE SER GLY GLY GLY SER GLY THR ASP PHE SEQRES 8 E 233 THR LEU THR ILE SER ARG LEU GLU PRO GLU ASP PHE ALA SEQRES 9 E 233 VAL TYR TYR CYS GLN GLN TYR GLY GLY SER PRO PHE PHE SEQRES 10 E 233 GLY GLY GLY THR LYS VAL GLU ILE LYS ARG THR VAL ALA SEQRES 11 E 233 ALA PRO SER VAL PHE ILE PHE PRO PRO SER ASP GLU GLN SEQRES 12 E 233 LEU LYS SER GLY THR ALA SER VAL VAL CYS LEU LEU ASN SEQRES 13 E 233 ASN PHE TYR PRO ARG GLU ALA LYS VAL GLN TRP LYS VAL SEQRES 14 E 233 ASP ASN ALA LEU GLN SER GLY ASN SER GLN GLU SER VAL SEQRES 15 E 233 THR GLU GLN ASP SER LYS ASP SER THR TYR SER LEU SER SEQRES 16 E 233 SER THR LEU THR LEU SER LYS ALA ASP TYR GLU LYS HIS SEQRES 17 E 233 LYS VAL TYR ALA CYS GLU VAL THR HIS GLN GLY LEU SER SEQRES 18 E 233 SER PRO VAL THR LYS SER PHE ASN ARG GLY GLU CYS HELIX 1 AA1 GLN A 62 GLN A 65 5 4 HELIX 2 AA2 ARG A 87 THR A 91 5 5 HELIX 3 AA3 LYS A 207 ASN A 210 5 4 HELIX 4 AA4 GLU B 80 PHE B 84 5 5 HELIX 5 AA5 ARG C 543 GLY C 547 5 5 HELIX 6 AA6 THR C 593 GLY C 598 1 6 HELIX 7 AA7 TYR C 613 TYR C 618 1 6 HELIX 8 AA8 SER E 121 GLY E 128 1 8 HELIX 9 AA9 SER E 182 GLU E 187 1 6 SHEET 1 AA1 4 ILE A 2 GLN A 3 0 SHEET 2 AA1 4 VAL A 18 SER A 25 -1 O SER A 25 N ILE A 2 SHEET 3 AA1 4 THR A 78 LEU A 83 -1 O LEU A 83 N VAL A 18 SHEET 4 AA1 4 VAL A 68 ASP A 73 -1 N THR A 71 O TYR A 80 SHEET 1 AA2 6 VAL A 11 LYS A 12 0 SHEET 2 AA2 6 THR A 117 VAL A 121 1 O THR A 120 N LYS A 12 SHEET 3 AA2 6 ALA A 92 ARG A 98 -1 N ALA A 92 O VAL A 119 SHEET 4 AA2 6 ILE A 34 GLN A 39 -1 N VAL A 37 O TYR A 95 SHEET 5 AA2 6 LEU A 45 ILE A 51 -1 O GLU A 46 N ARG A 38 SHEET 6 AA2 6 ASN A 59 TYR A 60 -1 O ASN A 59 N GLY A 50 SHEET 1 AA3 4 VAL A 103 VAL A 104 0 SHEET 2 AA3 4 THR C 625 VAL C 633 1 O ARG C 630 N VAL A 104 SHEET 3 AA3 4 VAL C 636 CYS C 644 -1 O LEU C 640 N VAL C 629 SHEET 4 AA3 4 CYS C 607 VAL C 609 -1 N LEU C 608 O ALA C 643 SHEET 1 AA4 4 PHE A 128 LEU A 130 0 SHEET 2 AA4 4 ALA A 143 TYR A 151 -1 O LEU A 147 N PHE A 128 SHEET 3 AA4 4 TYR A 182 THR A 189 -1 O VAL A 188 N LEU A 144 SHEET 4 AA4 4 VAL A 169 THR A 171 -1 N HIS A 170 O VAL A 187 SHEET 1 AA5 3 THR A 157 VAL A 158 0 SHEET 2 AA5 3 ILE A 201 HIS A 206 -1 O ASN A 205 N THR A 157 SHEET 3 AA5 3 THR A 211 ARG A 216 -1 O VAL A 213 N VAL A 204 SHEET 1 AA6 4 LEU B 4 THR B 5 0 SHEET 2 AA6 4 ARG B 18 ALA B 25 -1 O ARG B 24 N THR B 5 SHEET 3 AA6 4 PHE B 72 SER B 77 -1 O ILE B 76 N ALA B 19 SHEET 4 AA6 4 PHE B 63 GLY B 66 -1 N GLY B 66 O THR B 73 SHEET 1 AA7 2 THR B 10 LEU B 11 0 SHEET 2 AA7 2 LYS B 103 VAL B 104 1 O LYS B 103 N LEU B 11 SHEET 1 AA8 5 ILE B 54 ARG B 55 0 SHEET 2 AA8 5 ARG B 46 TYR B 50 -1 N TYR B 50 O ILE B 54 SHEET 3 AA8 5 ALA B 35 GLN B 38 -1 N TRP B 36 O ILE B 49 SHEET 4 AA8 5 CYS B 89 GLN B 91 -1 O GLN B 90 N ALA B 35 SHEET 5 AA8 5 PHE B 97 PHE B 98 -1 O PHE B 97 N GLN B 91 SHEET 1 AA9 2 THR C 473 TYR C 474 0 SHEET 2 AA9 2 CYS C 569 ASN C 570 -1 O ASN C 570 N THR C 473 SHEET 1 AB1 4 PRO C 513 VAL C 515 0 SHEET 2 AB1 4 TYR C 507 PHE C 509 -1 N CYS C 508 O VAL C 514 SHEET 3 AB1 4 GLY C 551 ASN C 556 -1 O GLY C 551 N PHE C 509 SHEET 4 AB1 4 PHE C 560 GLY C 565 -1 O LYS C 562 N TRP C 554 SHEET 1 AB2 4 SER E 114 PHE E 118 0 SHEET 2 AB2 4 ALA E 130 PHE E 139 -1 O VAL E 133 N PHE E 118 SHEET 3 AB2 4 TYR E 173 LEU E 181 -1 O LEU E 179 N VAL E 132 SHEET 4 AB2 4 GLN E 160 VAL E 163 -1 N GLN E 160 O THR E 178 SHEET 1 AB3 3 ALA E 153 LEU E 154 0 SHEET 2 AB3 3 ALA E 144 VAL E 150 -1 N VAL E 150 O ALA E 153 SHEET 3 AB3 3 CYS E 194 HIS E 198 -1 O THR E 197 N LYS E 145 SSBOND 1 CYS A 22 CYS A 96 1555 1555 2.03 SSBOND 2 CYS A 146 CYS A 202 1555 1555 2.03 SSBOND 3 CYS B 23 CYS B 89 1555 1555 2.04 SSBOND 4 CYS C 452 CYS C 620 1555 1555 2.03 SSBOND 5 CYS C 459 CYS C 486 1555 1555 2.03 SSBOND 6 CYS C 494 CYS C 564 1555 1555 2.03 SSBOND 7 CYS C 508 CYS C 552 1555 1555 2.04 SSBOND 8 CYS C 569 CYS C 597 1555 1555 2.03 SSBOND 9 CYS C 581 CYS C 585 1555 1555 2.03 SSBOND 10 CYS C 607 CYS C 644 1555 1555 2.03 SSBOND 11 CYS E 134 CYS E 194 1555 1555 2.03 CISPEP 1 THR C 510 PRO C 511 0 20.34 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000