HEADER VIRAL PROTEIN/IMMUNE SYSTEM 24-AUG-23 8TY7 TITLE CRYSTAL STRUCTURE OF 05.GC.W2.3C10 FAB IN COMPLEX WITH H1 HA FROM TITLE 2 A/CALIFORNIA/04/2009(H1N1) COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEMAGGLUTININ; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: HA1 SUBDOMAIN (UNP RESIDUES 18-344); COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: HEMAGGLUTININ; COMPND 8 CHAIN: B; COMPND 9 FRAGMENT: HA2 SUBDOMAIN (UNP RESIDUES 326-499); COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: GC_W2_3C10, HEAVY CHAIN; COMPND 13 CHAIN: H; COMPND 14 ENGINEERED: YES; COMPND 15 MOL_ID: 4; COMPND 16 MOLECULE: GC_W2_3C10, LIGHT CHAIN; COMPND 17 CHAIN: L; COMPND 18 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS (STRAIN SWL SOURCE 3 A/CALIFORNIA/04/2009 H1N1); SOURCE 4 ORGANISM_TAXID: 641501; SOURCE 5 STRAIN: SWL A/CALIFORNIA/04/2009 H1N1; SOURCE 6 GENE: HA; SOURCE 7 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 8 EXPRESSION_SYSTEM_COMMON: CABBAGE LOOPER; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS (STRAIN SWL SOURCE 12 A/CALIFORNIA/04/2009 H1N1); SOURCE 13 ORGANISM_TAXID: 641501; SOURCE 14 STRAIN: SWL A/CALIFORNIA/04/2009 H1N1; SOURCE 15 GENE: HA; SOURCE 16 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 17 EXPRESSION_SYSTEM_COMMON: CABBAGE LOOPER; SOURCE 18 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 19 MOL_ID: 3; SOURCE 20 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 21 ORGANISM_COMMON: HUMAN; SOURCE 22 ORGANISM_TAXID: 9606; SOURCE 23 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 24 EXPRESSION_SYSTEM_COMMON: CHINESE HAMSTER; SOURCE 25 EXPRESSION_SYSTEM_TAXID: 10029; SOURCE 26 MOL_ID: 4; SOURCE 27 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 28 ORGANISM_COMMON: HUMAN; SOURCE 29 ORGANISM_TAXID: 9606; SOURCE 30 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 31 EXPRESSION_SYSTEM_COMMON: CHINESE HAMSTER; SOURCE 32 EXPRESSION_SYSTEM_TAXID: 10029 KEYWDS H1N1, ANTIBODY, HEMAGGLUTININ, VIRAL PROTEIN-IMMUNE SYSTEM COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR T.H.LIN,N.MOORE,I.A.WILSON REVDAT 2 10-JUL-24 8TY7 1 JRNL REVDAT 1 26-JUN-24 8TY7 0 JRNL AUTH K.M.MCINTIRE,H.MENG,T.H.LIN,W.KIM,N.E.MOORE,J.HAN,M.MCMAHON, JRNL AUTH 2 M.WANG,S.K.MALLADI,B.M.MOHAMMED,J.Q.ZHOU,A.J.SCHMITZ, JRNL AUTH 3 K.B.HOEHN,J.M.CARRENO,T.YELLIN,T.SUESSEN,W.D.MIDDLETON, JRNL AUTH 4 S.A.TEEFEY,R.M.PRESTI,F.KRAMMER,J.S.TURNER,A.B.WARD, JRNL AUTH 5 I.A.WILSON,S.H.KLEINSTEIN,A.H.ELLEBEDY JRNL TITL MATURATION OF GERMINAL CENTER B CELLS AFTER INFLUENZA VIRUS JRNL TITL 2 VACCINATION IN HUMANS. JRNL REF J.EXP.MED. V. 221 2024 JRNL REFN ESSN 1540-9538 JRNL PMID 38935072 JRNL DOI 10.1084/JEM.20240668 REMARK 2 REMARK 2 RESOLUTION. 3.21 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.19.2_4158: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.21 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.03 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 22209 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.247 REMARK 3 R VALUE (WORKING SET) : 0.245 REMARK 3 FREE R VALUE : 0.288 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.270 REMARK 3 FREE R VALUE TEST SET COUNT : 1171 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.0300 - 6.4100 1.00 2692 179 0.2068 0.2575 REMARK 3 2 6.4100 - 5.1000 1.00 2658 139 0.2594 0.3039 REMARK 3 3 5.0900 - 4.4500 1.00 2614 154 0.2433 0.2850 REMARK 3 4 4.4500 - 4.0400 1.00 2601 161 0.2772 0.3229 REMARK 3 5 4.0400 - 3.7500 1.00 2623 144 0.2502 0.2955 REMARK 3 6 3.7500 - 3.5300 1.00 2646 104 0.2890 0.3151 REMARK 3 7 3.5300 - 3.3600 1.00 2601 139 0.3109 0.3857 REMARK 3 8 3.3500 - 3.2100 1.00 2603 151 0.3405 0.4048 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.590 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 40.010 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 7381 REMARK 3 ANGLE : 0.438 10019 REMARK 3 CHIRALITY : 0.049 1121 REMARK 3 PLANARITY : 0.004 1286 REMARK 3 DIHEDRAL : 3.914 1014 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8TY7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-AUG-23. REMARK 100 THE DEPOSITION ID IS D_1000276916. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-NOV-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22209 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.210 REMARK 200 RESOLUTION RANGE LOW (A) : 41.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 22.10 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.19600 REMARK 200 FOR THE DATA SET : 22.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.21 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.26 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 1.00000 REMARK 200 FOR SHELL : 0.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4M4Y REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SODIUM ACETATE, PH 6.4, 18% REMARK 280 PEG3350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 21 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X,-Y+1/2,Z REMARK 290 15555 -X+1/2,Y,-Z REMARK 290 16555 X,-Y,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z,-X,-Y+1/2 REMARK 290 19555 -Z,-X+1/2,Y REMARK 290 20555 -Z+1/2,X,-Y REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z,-X REMARK 290 23555 Y,-Z,-X+1/2 REMARK 290 24555 -Y,-Z+1/2,X REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 100.50300 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 100.50300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 100.50300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 100.50300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 100.50300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 100.50300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 100.50300 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 100.50300 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 100.50300 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 100.50300 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 100.50300 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 100.50300 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 100.50300 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 100.50300 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 100.50300 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 100.50300 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 100.50300 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 100.50300 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 100.50300 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 100.50300 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 100.50300 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 100.50300 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 100.50300 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 100.50300 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 100.50300 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 100.50300 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 100.50300 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 100.50300 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 100.50300 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 100.50300 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 100.50300 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 100.50300 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 100.50300 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 100.50300 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 100.50300 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 100.50300 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DODECAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DODECAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 50320 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 114580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -259.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 3 1.000000 0.000000 0.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 7 REMARK 465 SER A 328 REMARK 465 ARG A 329 REMARK 465 GLY B 176 REMARK 465 ARG B 177 REMARK 465 ASP H 0 REMARK 465 SER H 136 REMARK 465 LYS H 137 REMARK 465 SER H 138 REMARK 465 THR H 139 REMARK 465 SER H 140 REMARK 465 GLY H 141 REMARK 465 CYS L 214 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR H 199 OG1 CG2 REMARK 470 GLN H 200 CG CD OE1 NE2 REMARK 470 ARG H 218 CD NE CZ NH1 NH2 REMARK 470 GLU H 220 CG CD OE1 OE2 REMARK 470 PRO H 221 CG CD REMARK 470 LYS H 222 CG CD CE NZ REMARK 470 SER H 223 OG REMARK 470 ASP L 122 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1 THR A 283 O GLY A 286 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 196 -6.37 71.12 REMARK 500 SER A 266 157.76 65.70 REMARK 500 ALA B 7 18.92 58.69 REMARK 500 LYS B 127 -130.55 60.51 REMARK 500 VAL H 2 138.95 68.76 REMARK 500 THR H 55 178.98 56.70 REMARK 500 VAL L 15 127.07 68.84 REMARK 500 SER L 30 -101.42 53.65 REMARK 500 TYR L 32 33.97 -97.05 REMARK 500 SER L 52 -159.03 -152.19 REMARK 500 ASN L 53 67.66 60.85 REMARK 500 REMARK 500 REMARK: NULL DBREF 8TY7 A 11 329 UNP G8EHJ9 G8EHJ9_I09A0 18 344 DBREF 8TY7 B 1 174 UNP I1ZFF9 I1ZFF9_9INFA 326 499 DBREF 8TY7 H 0 224 PDB 8TY7 8TY7 0 224 DBREF 8TY7 L 1 214 PDB 8TY7 8TY7 1 214 SEQADV 8TY7 ALA A 7 UNP G8EHJ9 EXPRESSION TAG SEQADV 8TY7 ASP A 8 UNP G8EHJ9 EXPRESSION TAG SEQADV 8TY7 PRO A 9 UNP G8EHJ9 EXPRESSION TAG SEQADV 8TY7 GLY A 10 UNP G8EHJ9 EXPRESSION TAG SEQADV 8TY7 SER A 186 UNP G8EHJ9 PRO 200 CONFLICT SEQADV 8TY7 ALA A 327 UNP G8EHJ9 GLN 342 CONFLICT SEQADV 8TY7 SER B 175 UNP I1ZFF9 EXPRESSION TAG SEQADV 8TY7 GLY B 176 UNP I1ZFF9 EXPRESSION TAG SEQADV 8TY7 ARG B 177 UNP I1ZFF9 EXPRESSION TAG SEQRES 1 A 331 ALA ASP PRO GLY ASP THR LEU CYS ILE GLY TYR HIS ALA SEQRES 2 A 331 ASN ASN SER THR ASP THR VAL ASP THR VAL LEU GLU LYS SEQRES 3 A 331 ASN VAL THR VAL THR HIS SER VAL ASN LEU LEU GLU ASP SEQRES 4 A 331 LYS HIS ASN GLY LYS LEU CYS LYS LEU ARG GLY VAL ALA SEQRES 5 A 331 PRO LEU HIS LEU GLY LYS CYS ASN ILE ALA GLY TRP ILE SEQRES 6 A 331 LEU GLY ASN PRO GLU CYS GLU SER LEU SER THR ALA SER SEQRES 7 A 331 SER TRP SER TYR ILE VAL GLU THR PRO SER SER ASP ASN SEQRES 8 A 331 GLY THR CYS TYR PRO GLY ASP PHE ILE ASP TYR GLU GLU SEQRES 9 A 331 LEU ARG GLU GLN LEU SER SER VAL SER SER PHE GLU ARG SEQRES 10 A 331 PHE GLU ILE PHE PRO LYS THR SER SER TRP PRO ASN HIS SEQRES 11 A 331 ASP SER ASN LYS GLY VAL THR ALA ALA CYS PRO HIS ALA SEQRES 12 A 331 GLY ALA LYS SER PHE TYR LYS ASN LEU ILE TRP LEU VAL SEQRES 13 A 331 LYS LYS GLY ASN SER TYR PRO LYS LEU SER LYS SER TYR SEQRES 14 A 331 ILE ASN ASP LYS GLY LYS GLU VAL LEU VAL LEU TRP GLY SEQRES 15 A 331 ILE HIS HIS PRO SER THR SER ALA ASP GLN GLN SER LEU SEQRES 16 A 331 TYR GLN ASN ALA ASP THR TYR VAL PHE VAL GLY SER SER SEQRES 17 A 331 ARG TYR SER LYS LYS PHE LYS PRO GLU ILE ALA ILE ARG SEQRES 18 A 331 PRO LYS VAL ARG ASP GLN GLU GLY ARG MET ASN TYR TYR SEQRES 19 A 331 TRP THR LEU VAL GLU PRO GLY ASP LYS ILE THR PHE GLU SEQRES 20 A 331 ALA THR GLY ASN LEU VAL VAL PRO ARG TYR ALA PHE ALA SEQRES 21 A 331 MET GLU ARG ASN ALA GLY SER GLY ILE ILE ILE SER ASP SEQRES 22 A 331 THR PRO VAL HIS ASP CYS ASN THR THR CYS GLN THR PRO SEQRES 23 A 331 LYS GLY ALA ILE ASN THR SER LEU PRO PHE GLN ASN ILE SEQRES 24 A 331 HIS PRO ILE THR ILE GLY LYS CYS PRO LYS TYR VAL LYS SEQRES 25 A 331 SER THR LYS LEU ARG LEU ALA THR GLY LEU ARG ASN ILE SEQRES 26 A 331 PRO SER ILE ALA SER ARG SEQRES 1 B 177 GLY LEU PHE GLY ALA ILE ALA GLY PHE ILE GLU GLY GLY SEQRES 2 B 177 TRP THR GLY MET VAL ASP GLY TRP TYR GLY TYR HIS HIS SEQRES 3 B 177 GLN ASN GLU GLN GLY SER GLY TYR ALA ALA ASP LEU LYS SEQRES 4 B 177 SER THR GLN ASN ALA ILE ASP GLY ILE THR ASN LYS VAL SEQRES 5 B 177 ASN SER VAL ILE GLU LYS MET ASN THR GLN PHE THR ALA SEQRES 6 B 177 VAL GLY LYS GLU PHE ASN HIS LEU GLU LYS ARG ILE GLU SEQRES 7 B 177 ASN LEU ASN LYS LYS VAL ASP ASP GLY PHE LEU ASP ILE SEQRES 8 B 177 TRP THR TYR ASN ALA GLU LEU LEU VAL LEU LEU GLU ASN SEQRES 9 B 177 GLU ARG THR LEU ASP TYR HIS ASP SER ASN VAL LYS ASN SEQRES 10 B 177 LEU TYR GLU LYS VAL ARG SER GLN LEU LYS ASN ASN ALA SEQRES 11 B 177 LYS GLU ILE GLY ASN GLY CYS PHE GLU PHE TYR HIS LYS SEQRES 12 B 177 CYS ASP ASN THR CYS MET GLU SER VAL LYS ASN GLY THR SEQRES 13 B 177 TYR ASP TYR PRO LYS TYR SER GLU GLU ALA LYS LEU ASN SEQRES 14 B 177 ARG GLU GLU ILE ASP SER GLY ARG SEQRES 1 H 225 ASP GLU VAL GLN LEU VAL GLN SER GLY ALA GLU VAL LYS SEQRES 2 H 225 LYS PRO GLY SER SER VAL ARG VAL SER CYS LYS ALA SER SEQRES 3 H 225 GLY GLY THR PHE SER ALA ILE SER TRP VAL ARG GLN ALA SEQRES 4 H 225 PRO GLY GLN GLY LEU GLU TRP MET GLY GLY ILE ILE PRO SEQRES 5 H 225 VAL PHE GLY THR ALA ASN TYR ALA GLN LYS PHE GLN GLY SEQRES 6 H 225 ARG VAL THR ILE THR ALA ASP ASP SER THR SER THR ALA SEQRES 7 H 225 TYR MET GLU VAL SER SER LEU ARG SER ASP ASP THR ALA SEQRES 8 H 225 VAL TYR TYR CYS ALA ARG GLU GLU THR TRP LYS GLY ALA SEQRES 9 H 225 THR ILE GLY VAL MET GLY ILE TRP GLY GLN GLY THR MET SEQRES 10 H 225 VAL THR VAL SER SER ALA SER THR LYS GLY PRO SER VAL SEQRES 11 H 225 PHE PRO LEU ALA PRO SER SER LYS SER THR SER GLY GLY SEQRES 12 H 225 THR ALA ALA LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO SEQRES 13 H 225 GLU PRO VAL THR VAL SER TRP ASN SER GLY ALA LEU THR SEQRES 14 H 225 SER GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SER SER SEQRES 15 H 225 GLY LEU TYR SER LEU SER SER VAL VAL THR VAL PRO SER SEQRES 16 H 225 SER SER LEU GLY THR GLN THR TYR ILE CYS ASN VAL ASN SEQRES 17 H 225 HIS LYS PRO SER ASN THR LYS VAL ASP LYS ARG VAL GLU SEQRES 18 H 225 PRO LYS SER CYS SEQRES 1 L 214 ASP ILE GLN MET THR GLN SER PRO SER SER LEU SER ALA SEQRES 2 L 214 SER VAL GLY ASP ARG VAL THR ILE THR CYS ARG ALA SER SEQRES 3 L 214 GLN SER ILE SER SER TYR LEU ASN TRP TYR GLN HIS LYS SEQRES 4 L 214 PRO GLY LYS ALA PRO LYS LEU LEU ILE PHE THR ALA SER SEQRES 5 L 214 ASN LEU GLN SER GLY VAL PRO SER ARG PHE SER GLY GLY SEQRES 6 L 214 GLY SER GLY THR ASP PHE THR LEU THR ILE SER SER LEU SEQRES 7 L 214 GLN PRO GLU ASP PHE ALA THR TYR TYR CYS GLN GLN SER SEQRES 8 L 214 TYR THR SER PRO ARG THR PHE GLY GLN GLY THR LYS VAL SEQRES 9 L 214 GLU ILE LYS ARG THR VAL ALA ALA PRO SER VAL PHE ILE SEQRES 10 L 214 PHE PRO PRO SER ASP GLU GLN LEU LYS SER GLY THR ALA SEQRES 11 L 214 SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG GLU SEQRES 12 L 214 ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU GLN SER SEQRES 13 L 214 GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SER LYS SEQRES 14 L 214 ASP SER THR TYR SER LEU SER SER THR LEU THR LEU SER SEQRES 15 L 214 LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA CYS GLU SEQRES 16 L 214 VAL THR HIS GLN GLY LEU SER SER PRO VAL THR LYS SER SEQRES 17 L 214 PHE ASN ARG GLY GLU CYS HET NAG A 401 14 HET NAG A 402 14 HET NAG B 201 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 5 NAG 3(C8 H15 N O6) HELIX 1 AA1 ASN A 65 GLY A 72 1 8 HELIX 2 AA2 ASP A 104 LEU A 112 1 9 HELIX 3 AA3 THR A 187 TYR A 195 1 9 HELIX 4 AA4 ASP B 37 LYS B 58 1 22 HELIX 5 AA5 GLU B 74 LYS B 127 1 54 HELIX 6 AA6 ASP B 145 GLY B 155 1 11 HELIX 7 AA7 ASP B 158 ASP B 174 1 17 HELIX 8 AA8 ARG H 85 THR H 89 5 5 HELIX 9 AA9 SER H 195 GLN H 200 1 6 HELIX 10 AB1 LYS H 209 ASN H 212 5 4 HELIX 11 AB2 SER L 121 LYS L 126 1 6 HELIX 12 AB3 LYS L 183 LYS L 188 1 6 SHEET 1 AA1 5 GLY B 31 ALA B 36 0 SHEET 2 AA1 5 TYR B 22 ASN B 28 -1 N TYR B 24 O ALA B 35 SHEET 3 AA1 5 THR A 12 TYR A 17 -1 N CYS A 14 O HIS B 25 SHEET 4 AA1 5 CYS B 137 PHE B 140 -1 O PHE B 138 N LEU A 13 SHEET 5 AA1 5 ALA B 130 GLU B 132 -1 N LYS B 131 O GLU B 139 SHEET 1 AA2 2 THR A 25 VAL A 26 0 SHEET 2 AA2 2 VAL A 34 THR A 35 -1 O VAL A 34 N VAL A 26 SHEET 1 AA3 2 SER A 39 ASN A 41 0 SHEET 2 AA3 2 ARG A 315 ALA A 317 -1 O LEU A 316 N VAL A 40 SHEET 1 AA4 3 LEU A 43 GLU A 44 0 SHEET 2 AA4 3 PHE A 294 GLN A 295 1 O PHE A 294 N GLU A 44 SHEET 3 AA4 3 LYS A 307 TYR A 308 1 O LYS A 307 N GLN A 295 SHEET 1 AA5 2 LEU A 51 LEU A 54 0 SHEET 2 AA5 2 VAL A 274 THR A 279 1 O HIS A 275 N LEU A 51 SHEET 1 AA6 3 LEU A 59 HIS A 60 0 SHEET 2 AA6 3 ILE A 87 VAL A 88 1 O VAL A 88 N LEU A 59 SHEET 3 AA6 3 ILE A 267 ILE A 268 1 O ILE A 268 N ILE A 87 SHEET 1 AA7 5 SER A 83 TRP A 84 0 SHEET 2 AA7 5 VAL A 115 PHE A 118 -1 O PHE A 116B N SER A 83 SHEET 3 AA7 5 ALA A 257 ARG A 262 -1 O GLU A 261 N SER A 116 SHEET 4 AA7 5 GLU A 175 HIS A 184 -1 N GLU A 175 O MET A 260 SHEET 5 AA7 5 ARG A 229 VAL A 237 -1 O TYR A 233 N TRP A 180 SHEET 1 AA8 2 HIS A 130 ASP A 131 0 SHEET 2 AA8 2 VAL A 155 LYS A 156 -1 O VAL A 155 N ASP A 131 SHEET 1 AA9 2 THR A 136 HIS A 141 0 SHEET 2 AA9 2 ALA A 144 SER A 146 -1 O ALA A 144 N HIS A 141 SHEET 1 AB1 2 LEU A 151 TRP A 153 0 SHEET 2 AB1 2 VAL A 252 PRO A 254 -1 O VAL A 253 N ILE A 152 SHEET 1 AB2 4 LEU A 164 ILE A 169 0 SHEET 2 AB2 4 LYS A 242 ALA A 247 -1 O ALA A 247 N LEU A 164 SHEET 3 AB2 4 VAL A 202 GLY A 205 -1 N PHE A 203 O GLU A 246 SHEET 4 AB2 4 SER A 210 PHE A 213 -1 O PHE A 213 N VAL A 202 SHEET 1 AB3 2 CYS A 281 GLN A 282 0 SHEET 2 AB3 2 ILE A 302 GLY A 303 -1 O ILE A 302 N GLN A 282 SHEET 1 AB4 4 LEU H 4 GLN H 6 0 SHEET 2 AB4 4 VAL H 18 ALA H 24 -1 O LYS H 23 N VAL H 5 SHEET 3 AB4 4 THR H 76 VAL H 81 -1 O ALA H 77 N CYS H 22 SHEET 4 AB4 4 VAL H 66 ASP H 71 -1 N THR H 69 O TYR H 78 SHEET 1 AB5 6 GLU H 10 LYS H 12 0 SHEET 2 AB5 6 THR H 115 VAL H 119 1 O THR H 118 N LYS H 12 SHEET 3 AB5 6 ALA H 90 ARG H 96 -1 N ALA H 90 O VAL H 117 SHEET 4 AB5 6 ILE H 32 GLN H 37 -1 N VAL H 35 O TYR H 93 SHEET 5 AB5 6 LEU H 43 ILE H 50 -1 O MET H 46 N TRP H 34 SHEET 6 AB5 6 GLY H 54 TYR H 58 -1 O ASN H 57 N GLY H 48 SHEET 1 AB6 4 SER H 128 LEU H 132 0 SHEET 2 AB6 4 THR H 143 TYR H 153 -1 O GLY H 147 N LEU H 132 SHEET 3 AB6 4 TYR H 184 PRO H 193 -1 O LEU H 186 N VAL H 150 SHEET 4 AB6 4 VAL H 171 THR H 173 -1 N HIS H 172 O VAL H 189 SHEET 1 AB7 4 SER H 128 LEU H 132 0 SHEET 2 AB7 4 THR H 143 TYR H 153 -1 O GLY H 147 N LEU H 132 SHEET 3 AB7 4 TYR H 184 PRO H 193 -1 O LEU H 186 N VAL H 150 SHEET 4 AB7 4 VAL H 177 LEU H 178 -1 N VAL H 177 O SER H 185 SHEET 1 AB8 3 THR H 159 TRP H 162 0 SHEET 2 AB8 3 ILE H 203 HIS H 208 -1 O ASN H 207 N THR H 159 SHEET 3 AB8 3 THR H 213 ARG H 218 -1 O VAL H 215 N VAL H 206 SHEET 1 AB9 4 MET L 4 SER L 7 0 SHEET 2 AB9 4 VAL L 19 ALA L 25 -1 O ARG L 24 N THR L 5 SHEET 3 AB9 4 ASP L 70 ILE L 75 -1 O LEU L 73 N ILE L 21 SHEET 4 AB9 4 PHE L 62 SER L 67 -1 N SER L 63 O THR L 74 SHEET 1 AC1 6 SER L 10 ALA L 13 0 SHEET 2 AC1 6 THR L 102 ILE L 106 1 O GLU L 105 N ALA L 13 SHEET 3 AC1 6 THR L 85 GLN L 90 -1 N TYR L 86 O THR L 102 SHEET 4 AC1 6 LEU L 33 HIS L 38 -1 N ASN L 34 O GLN L 89 SHEET 5 AC1 6 LYS L 45 PHE L 49 -1 O ILE L 48 N TRP L 35 SHEET 6 AC1 6 SER L 52 LEU L 54 -1 O SER L 52 N PHE L 49 SHEET 1 AC2 4 SER L 114 PHE L 118 0 SHEET 2 AC2 4 THR L 129 PHE L 139 -1 O LEU L 135 N PHE L 116 SHEET 3 AC2 4 TYR L 173 SER L 182 -1 O LEU L 175 N LEU L 136 SHEET 4 AC2 4 SER L 159 VAL L 163 -1 N SER L 162 O SER L 176 SHEET 1 AC3 4 ALA L 153 GLN L 155 0 SHEET 2 AC3 4 LYS L 145 VAL L 150 -1 N VAL L 150 O ALA L 153 SHEET 3 AC3 4 VAL L 191 THR L 197 -1 O GLU L 195 N GLN L 147 SHEET 4 AC3 4 VAL L 205 ASN L 210 -1 O VAL L 205 N VAL L 196 SSBOND 1 CYS A 64 CYS A 76 1555 1555 2.03 SSBOND 2 CYS A 97 CYS A 139 1555 1555 2.03 SSBOND 3 CYS A 281 CYS A 305 1555 1555 2.03 SSBOND 4 CYS B 144 CYS B 148 1555 1555 2.03 SSBOND 5 CYS H 22 CYS H 94 1555 1555 2.03 SSBOND 6 CYS H 148 CYS H 204 1555 1555 2.03 SSBOND 7 CYS L 23 CYS L 88 1555 1555 2.04 SSBOND 8 CYS L 134 CYS L 194 1555 1555 2.03 LINK ND2 ASN A 33 C1 NAG A 401 1555 1555 1.45 LINK ND2 ASN A 278 C1 NAG A 402 1555 1555 1.44 LINK ND2 ASN B 154 C1 NAG B 201 1555 1555 1.45 CISPEP 1 PHE H 154 PRO H 155 0 -3.70 CISPEP 2 GLU H 156 PRO H 157 0 -5.29 CISPEP 3 SER L 7 PRO L 8 0 0.64 CISPEP 4 SER L 94 PRO L 95 0 -4.84 CISPEP 5 TYR L 140 PRO L 141 0 2.15 CRYST1 201.006 201.006 201.006 90.00 90.00 90.00 I 21 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004975 0.000000 0.000000 0.00000 SCALE2 0.000000 0.004975 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004975 0.00000