HEADER HYDROLASE/INHIBITOR 25-AUG-23 8TYH TITLE PLASMODIUM VIVAX PMX COMPND MOL_ID: 1; COMPND 2 MOLECULE: ASPARTYL PROTEASE, PUTATIVE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM VIVAX SAL-1; SOURCE 3 ORGANISM_TAXID: 126793; SOURCE 4 GENE: PVX_088125; SOURCE 5 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 7 EXPRESSION_SYSTEM_CELL_LINE: SF21; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PTRIEX2 KEYWDS PLASMEPSINIX, PLASMEPSINX, INHIBITOR, HYDROLASE, HYDROLASE-INHIBITOR KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.N.HODDER,S.W.SCALLY,A.F.COWMAN REVDAT 1 28-AUG-24 8TYH 0 JRNL AUTH A.N.HODDER,A.F.COWMAN,S.W.SCALLY JRNL TITL PLASMODIUM VIVAX PMX JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.83 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.83 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.82 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 43327 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.229 REMARK 3 R VALUE (WORKING SET) : 0.228 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 2187 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.8200 - 4.6100 1.00 2674 144 0.1768 0.1846 REMARK 3 2 4.6100 - 3.6600 1.00 2639 117 0.1748 0.1914 REMARK 3 3 3.6600 - 3.2000 1.00 2586 155 0.2188 0.2422 REMARK 3 4 3.2000 - 2.9100 1.00 2563 139 0.2509 0.2884 REMARK 3 5 2.9000 - 2.7000 1.00 2567 131 0.2482 0.2941 REMARK 3 6 2.7000 - 2.5400 1.00 2614 106 0.2738 0.2720 REMARK 3 7 2.5400 - 2.4100 1.00 2572 137 0.2545 0.2824 REMARK 3 8 2.4100 - 2.3100 1.00 2564 141 0.2659 0.2553 REMARK 3 9 2.3100 - 2.2200 1.00 2561 120 0.2551 0.3004 REMARK 3 10 2.2200 - 2.1400 1.00 2525 190 0.2602 0.2744 REMARK 3 11 2.1400 - 2.0700 1.00 2536 126 0.2793 0.3140 REMARK 3 12 2.0700 - 2.0100 1.00 2573 142 0.2849 0.3406 REMARK 3 13 2.0100 - 1.9600 1.00 2578 121 0.2726 0.3297 REMARK 3 14 1.9600 - 1.9100 1.00 2523 135 0.3005 0.2993 REMARK 3 15 1.9100 - 1.8700 1.00 2557 141 0.3112 0.3175 REMARK 3 16 1.8700 - 1.8300 1.00 2508 142 0.3378 0.4058 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.255 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.374 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.24 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.03 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.019 2772 REMARK 3 ANGLE : 0.864 3829 REMARK 3 CHIRALITY : 0.048 404 REMARK 3 PLANARITY : 0.003 475 REMARK 3 DIHEDRAL : 9.721 1025 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 198 THROUGH 385 ) REMARK 3 ORIGIN FOR THE GROUP (A): -43.2412 -29.5652 -4.8409 REMARK 3 T TENSOR REMARK 3 T11: 0.2278 T22: 0.2768 REMARK 3 T33: 0.2362 T12: 0.0096 REMARK 3 T13: -0.0175 T23: 0.0511 REMARK 3 L TENSOR REMARK 3 L11: 2.1637 L22: 4.4389 REMARK 3 L33: 0.9200 L12: -0.0861 REMARK 3 L13: 0.2031 L23: 0.2714 REMARK 3 S TENSOR REMARK 3 S11: 0.0216 S12: 0.1780 S13: 0.2511 REMARK 3 S21: -0.1937 S22: -0.0595 S23: -0.1593 REMARK 3 S31: -0.1484 S32: 0.0828 S33: 0.0465 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 386 THROUGH 536 ) REMARK 3 ORIGIN FOR THE GROUP (A): -54.5284 -8.2824 -8.7201 REMARK 3 T TENSOR REMARK 3 T11: 0.2805 T22: 0.1799 REMARK 3 T33: 0.3607 T12: 0.0217 REMARK 3 T13: 0.0111 T23: -0.0357 REMARK 3 L TENSOR REMARK 3 L11: 1.9999 L22: 3.7001 REMARK 3 L33: 2.7220 L12: 0.6756 REMARK 3 L13: -0.6769 L23: -2.6519 REMARK 3 S TENSOR REMARK 3 S11: 0.0218 S12: 0.0966 S13: 0.2087 REMARK 3 S21: -0.0559 S22: -0.0505 S23: -0.1363 REMARK 3 S31: -0.0778 S32: -0.0451 S33: 0.0248 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8TYH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-AUG-23. REMARK 100 THE DEPOSITION ID IS D_1000276708. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-OCT-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43343 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.830 REMARK 200 RESOLUTION RANGE LOW (A) : 44.610 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.30 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.83 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.87 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.48500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SPG 25% (W/V) PEG 1500 30% (V/V) REMARK 280 (+/-)-2-METHYL-2,4-PENTANEDIOL 1MM TEW, PH 4.0, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 22.97300 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 22.97300 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 22.97300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 25 REMARK 465 THR A 26 REMARK 465 HIS A 27 REMARK 465 LYS A 28 REMARK 465 VAL A 29 REMARK 465 TYR A 30 REMARK 465 LYS A 31 REMARK 465 VAL A 32 REMARK 465 GLY A 33 REMARK 465 SER A 34 REMARK 465 GLU A 35 REMARK 465 PRO A 36 REMARK 465 ILE A 37 REMARK 465 PRO A 38 REMARK 465 CYS A 39 REMARK 465 SER A 40 REMARK 465 GLN A 41 REMARK 465 CYS A 42 REMARK 465 LYS A 43 REMARK 465 ASP A 44 REMARK 465 VAL A 45 REMARK 465 ARG A 46 REMARK 465 GLU A 47 REMARK 465 CYS A 48 REMARK 465 SER A 49 REMARK 465 ALA A 50 REMARK 465 CYS A 51 REMARK 465 LEU A 52 REMARK 465 PHE A 53 REMARK 465 GLU A 54 REMARK 465 GLU A 55 REMARK 465 GLN A 56 REMARK 465 ASP A 57 REMARK 465 SER A 58 REMARK 465 PRO A 59 REMARK 465 HIS A 60 REMARK 465 ALA A 61 REMARK 465 ILE A 62 REMARK 465 HIS A 63 REMARK 465 LEU A 64 REMARK 465 LYS A 65 REMARK 465 LEU A 66 REMARK 465 ASN A 67 REMARK 465 LYS A 68 REMARK 465 LYS A 69 REMARK 465 LYS A 70 REMARK 465 PRO A 71 REMARK 465 SER A 72 REMARK 465 ASP A 73 REMARK 465 HIS A 74 REMARK 465 SER A 75 REMARK 465 ASN A 76 REMARK 465 LEU A 77 REMARK 465 LYS A 78 REMARK 465 LYS A 79 REMARK 465 HIS A 80 REMARK 465 HIS A 81 REMARK 465 ASP A 82 REMARK 465 SER A 83 REMARK 465 LEU A 84 REMARK 465 LYS A 85 REMARK 465 LEU A 86 REMARK 465 GLY A 87 REMARK 465 GLY A 88 REMARK 465 VAL A 89 REMARK 465 LYS A 90 REMARK 465 TYR A 91 REMARK 465 TYR A 92 REMARK 465 VAL A 93 REMARK 465 LYS A 94 REMARK 465 ARG A 95 REMARK 465 GLY A 96 REMARK 465 GLU A 97 REMARK 465 GLY A 98 REMARK 465 ILE A 99 REMARK 465 SER A 100 REMARK 465 GLY A 101 REMARK 465 SER A 102 REMARK 465 LEU A 103 REMARK 465 GLY A 104 REMARK 465 ASN A 105 REMARK 465 PRO A 106 REMARK 465 SER A 107 REMARK 465 GLY A 108 REMARK 465 HIS A 109 REMARK 465 THR A 110 REMARK 465 LEU A 111 REMARK 465 ASP A 112 REMARK 465 ASP A 113 REMARK 465 ILE A 114 REMARK 465 ASP A 115 REMARK 465 SER A 116 REMARK 465 ILE A 117 REMARK 465 ASN A 118 REMARK 465 GLU A 119 REMARK 465 GLU A 120 REMARK 465 ILE A 121 REMARK 465 ARG A 122 REMARK 465 ILE A 123 REMARK 465 ARG A 124 REMARK 465 ARG A 125 REMARK 465 GLU A 126 REMARK 465 GLU A 127 REMARK 465 SER A 128 REMARK 465 ALA A 129 REMARK 465 GLY A 130 REMARK 465 VAL A 131 REMARK 465 GLY A 132 REMARK 465 ARG A 133 REMARK 465 ASN A 134 REMARK 465 GLY A 135 REMARK 465 ALA A 136 REMARK 465 GLU A 137 REMARK 465 VAL A 138 REMARK 465 THR A 139 REMARK 465 ALA A 140 REMARK 465 TYR A 141 REMARK 465 GLY A 142 REMARK 465 GLY A 143 REMARK 465 SER A 144 REMARK 465 GLY A 145 REMARK 465 PRO A 146 REMARK 465 SER A 147 REMARK 465 ASP A 148 REMARK 465 ARG A 149 REMARK 465 PHE A 150 REMARK 465 ALA A 151 REMARK 465 GLY A 152 REMARK 465 VAL A 153 REMARK 465 GLN A 154 REMARK 465 ARG A 155 REMARK 465 HIS A 156 REMARK 465 ALA A 157 REMARK 465 HIS A 158 REMARK 465 ALA A 159 REMARK 465 GLY A 160 REMARK 465 GLY A 161 REMARK 465 VAL A 162 REMARK 465 SER A 163 REMARK 465 GLY A 164 REMARK 465 ASP A 165 REMARK 465 MET A 166 REMARK 465 ALA A 167 REMARK 465 SER A 168 REMARK 465 GLY A 169 REMARK 465 GLU A 170 REMARK 465 GLN A 171 REMARK 465 ARG A 172 REMARK 465 GLY A 173 REMARK 465 SER A 174 REMARK 465 ASP A 175 REMARK 465 GLU A 176 REMARK 465 ILE A 177 REMARK 465 ALA A 178 REMARK 465 LYS A 179 REMARK 465 GLY A 180 REMARK 465 GLU A 181 REMARK 465 SER A 182 REMARK 465 PHE A 183 REMARK 465 ILE A 184 REMARK 465 ASP A 185 REMARK 465 VAL A 186 REMARK 465 LYS A 187 REMARK 465 ASN A 188 REMARK 465 ALA A 189 REMARK 465 HIS A 190 REMARK 465 ALA A 191 REMARK 465 VAL A 192 REMARK 465 VAL A 193 REMARK 465 GLU A 194 REMARK 465 GLN A 195 REMARK 465 THR A 196 REMARK 465 GLU A 197 REMARK 465 ASN A 310 REMARK 465 ASP A 311 REMARK 465 SER A 312 REMARK 465 LEU A 313 REMARK 465 ASN A 314 REMARK 465 GLY A 315 REMARK 465 ALA A 537 REMARK 465 GLU A 538 REMARK 465 ALA A 539 REMARK 465 ALA A 540 REMARK 465 GLN A 541 REMARK 465 LYS A 542 REMARK 465 VAL A 543 REMARK 465 ALA A 544 REMARK 465 GLU A 545 REMARK 465 LEU A 546 REMARK 465 GLU A 547 REMARK 465 ASN A 548 REMARK 465 LEU A 549 REMARK 465 TYR A 550 REMARK 465 PHE A 551 REMARK 465 GLN A 552 REMARK 465 GLY A 553 REMARK 465 ASP A 554 REMARK 465 TYR A 555 REMARK 465 LYS A 556 REMARK 465 ASP A 557 REMARK 465 ASP A 558 REMARK 465 ASP A 559 REMARK 465 ASP A 560 REMARK 465 LYS A 561 REMARK 465 HIS A 562 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 209 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 842 O HOH A 909 2.01 REMARK 500 O HOH A 931 O HOH A 932 2.07 REMARK 500 O HOH A 852 O HOH A 900 2.14 REMARK 500 OE2 GLU A 306 O HOH A 801 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 394 -73.17 -150.35 REMARK 500 PHE A 509 -49.42 -141.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 932 DISTANCE = 6.13 ANGSTROMS DBREF 8TYH A 27 545 UNP A5KAC3 A5KAC3_PLAVS 27 545 SEQADV 8TYH GLY A 25 UNP A5KAC3 EXPRESSION TAG SEQADV 8TYH THR A 26 UNP A5KAC3 EXPRESSION TAG SEQADV 8TYH LEU A 546 UNP A5KAC3 EXPRESSION TAG SEQADV 8TYH GLU A 547 UNP A5KAC3 EXPRESSION TAG SEQADV 8TYH ASN A 548 UNP A5KAC3 EXPRESSION TAG SEQADV 8TYH LEU A 549 UNP A5KAC3 EXPRESSION TAG SEQADV 8TYH TYR A 550 UNP A5KAC3 EXPRESSION TAG SEQADV 8TYH PHE A 551 UNP A5KAC3 EXPRESSION TAG SEQADV 8TYH GLN A 552 UNP A5KAC3 EXPRESSION TAG SEQADV 8TYH GLY A 553 UNP A5KAC3 EXPRESSION TAG SEQADV 8TYH ASP A 554 UNP A5KAC3 EXPRESSION TAG SEQADV 8TYH TYR A 555 UNP A5KAC3 EXPRESSION TAG SEQADV 8TYH LYS A 556 UNP A5KAC3 EXPRESSION TAG SEQADV 8TYH ASP A 557 UNP A5KAC3 EXPRESSION TAG SEQADV 8TYH ASP A 558 UNP A5KAC3 EXPRESSION TAG SEQADV 8TYH ASP A 559 UNP A5KAC3 EXPRESSION TAG SEQADV 8TYH ASP A 560 UNP A5KAC3 EXPRESSION TAG SEQADV 8TYH LYS A 561 UNP A5KAC3 EXPRESSION TAG SEQADV 8TYH HIS A 562 UNP A5KAC3 EXPRESSION TAG SEQRES 1 A 538 GLY THR HIS LYS VAL TYR LYS VAL GLY SER GLU PRO ILE SEQRES 2 A 538 PRO CYS SER GLN CYS LYS ASP VAL ARG GLU CYS SER ALA SEQRES 3 A 538 CYS LEU PHE GLU GLU GLN ASP SER PRO HIS ALA ILE HIS SEQRES 4 A 538 LEU LYS LEU ASN LYS LYS LYS PRO SER ASP HIS SER ASN SEQRES 5 A 538 LEU LYS LYS HIS HIS ASP SER LEU LYS LEU GLY GLY VAL SEQRES 6 A 538 LYS TYR TYR VAL LYS ARG GLY GLU GLY ILE SER GLY SER SEQRES 7 A 538 LEU GLY ASN PRO SER GLY HIS THR LEU ASP ASP ILE ASP SEQRES 8 A 538 SER ILE ASN GLU GLU ILE ARG ILE ARG ARG GLU GLU SER SEQRES 9 A 538 ALA GLY VAL GLY ARG ASN GLY ALA GLU VAL THR ALA TYR SEQRES 10 A 538 GLY GLY SER GLY PRO SER ASP ARG PHE ALA GLY VAL GLN SEQRES 11 A 538 ARG HIS ALA HIS ALA GLY GLY VAL SER GLY ASP MET ALA SEQRES 12 A 538 SER GLY GLU GLN ARG GLY SER ASP GLU ILE ALA LYS GLY SEQRES 13 A 538 GLU SER PHE ILE ASP VAL LYS ASN ALA HIS ALA VAL VAL SEQRES 14 A 538 GLU GLN THR GLU GLU ASN VAL PHE LEU ILE PRO LEU LYS SEQRES 15 A 538 HIS LEU ARG ASP SER GLN PHE VAL GLY THR LEU LEU VAL SEQRES 16 A 538 GLY VAL PRO PRO GLN GLU ILE HIS PRO ILE PHE ASP THR SEQRES 17 A 538 GLY SER THR ASN LEU TRP VAL VAL THR THR ASP CYS GLU SEQRES 18 A 538 GLU GLU SER CYS LYS LYS VAL LYS ARG TYR ASN PRO TYR SEQRES 19 A 538 LYS SER LYS THR PHE ARG ARG SER PHE ILE GLY LYS ASN SEQRES 20 A 538 LEU HIS ILE VAL PHE GLY SER GLY SER ILE SER GLY SER SEQRES 21 A 538 ILE GLY LYS GLU THR PHE VAL LEU GLY ASP HIS THR VAL SEQRES 22 A 538 ARG ASN GLN THR PHE GLY LEU VAL GLU SER GLU SER ASN SEQRES 23 A 538 ASP SER LEU ASN GLY ASP ASN ILE PHE ASP TYR ILE ASP SEQRES 24 A 538 PHE GLU GLY ILE VAL GLY LEU GLY PHE PRO GLU MET LEU SEQRES 25 A 538 SER ALA GLY LYS VAL SER PHE PHE ASP ASN LEU LEU SER SEQRES 26 A 538 GLN ASN LYS ASN LEU SER PRO GLN PHE SER PHE TYR ILE SEQRES 27 A 538 SER PRO GLU ASP ASN THR SER THR PHE LEU VAL GLY GLY SEQRES 28 A 538 VAL SER LYS SER PHE TYR GLU GLY SER ILE TYR MET LEU SEQRES 29 A 538 PRO VAL VAL LYS GLU TYR TYR TRP GLU VAL GLU LEU ASP SEQRES 30 A 538 GLY ILE TYR VAL GLY GLU LYS LYS ILE CYS CYS GLU GLU SEQRES 31 A 538 LYS SER TYR ALA ILE PHE ASP THR GLY THR SER TYR ASN SEQRES 32 A 538 THR MET PRO SER ALA GLN MET LYS GLY PHE PHE ASP VAL SEQRES 33 A 538 VAL PRO SER ALA PRO CYS THR GLU GLU ASN TYR GLN GLU SEQRES 34 A 538 VAL LEU LYS ASN TYR PRO VAL ILE LYS TYR LEU PHE GLY SEQRES 35 A 538 ASP LEU VAL ILE GLU LEU LEU PRO GLU GLU TYR MET ILE SEQRES 36 A 538 LEU ASN GLU GLU SER CYS ILE PRO ALA TYR MET GLN ILE SEQRES 37 A 538 ASP VAL PRO SER GLU LYS ASN HIS ALA TYR LEU LEU GLY SEQRES 38 A 538 SER ILE ALA PHE MET ARG HIS TYR TYR THR VAL PHE VAL SEQRES 39 A 538 ARG GLY ALA GLY GLY GLN PRO SER MET VAL GLY VAL ALA SEQRES 40 A 538 LYS ALA ARG ALA ALA ALA GLU ALA ALA GLN LYS VAL ALA SEQRES 41 A 538 GLU LEU GLU ASN LEU TYR PHE GLN GLY ASP TYR LYS ASP SEQRES 42 A 538 ASP ASP ASP LYS HIS HET GOL A 701 6 HET TEW A 702 31 HET NAG A 703 14 HETNAM GOL GLYCEROL HETNAM TEW 6-TUNGSTOTELLURATE(VI) HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 2 GOL C3 H8 O3 FORMUL 3 TEW O24 TE W6 6- FORMUL 4 NAG C8 H15 N O6 FORMUL 5 HOH *132(H2 O) HELIX 1 AA1 GLU A 246 LYS A 251 1 6 HELIX 2 AA2 ASN A 256 SER A 260 5 5 HELIX 3 AA3 ASN A 317 TYR A 321 5 5 HELIX 4 AA4 PHE A 332 LEU A 336 5 5 HELIX 5 AA5 SER A 342 GLN A 350 1 9 HELIX 6 AA6 PRO A 430 VAL A 441 1 12 HELIX 7 AA7 ASN A 450 LEU A 455 1 6 HELIX 8 AA8 LEU A 473 TYR A 477 1 5 SHEET 1 AA1 9 PHE A 201 PRO A 204 0 SHEET 2 AA1 9 THR A 370 VAL A 373 -1 O PHE A 371 N ILE A 203 SHEET 3 AA1 9 GLN A 357 TYR A 361 -1 N TYR A 361 O THR A 370 SHEET 4 AA1 9 TYR A 513 VAL A 518 -1 O PHE A 517 N PHE A 358 SHEET 5 AA1 9 MET A 527 ALA A 533 -1 O ALA A 531 N TYR A 514 SHEET 6 AA1 9 TYR A 381 LYS A 392 -1 N GLU A 382 O LYS A 532 SHEET 7 AA1 9 GLU A 397 LEU A 400 -1 O GLU A 397 N VAL A 391 SHEET 8 AA1 9 SER A 416 PHE A 420 -1 O ALA A 418 N VAL A 398 SHEET 9 AA1 9 TYR A 502 LEU A 504 1 O LEU A 504 N ILE A 419 SHEET 1 AA2 2 LYS A 206 HIS A 207 0 SHEET 2 AA2 2 PHE A 213 VAL A 214 -1 O VAL A 214 N LYS A 206 SHEET 1 AA3 4 GLN A 224 ILE A 226 0 SHEET 2 AA3 4 LEU A 217 VAL A 219 -1 N VAL A 219 O GLN A 224 SHEET 3 AA3 4 GLY A 279 LEU A 292 -1 O VAL A 291 N LEU A 218 SHEET 4 AA3 4 ARG A 264 ARG A 265 -1 N ARG A 264 O LYS A 287 SHEET 1 AA4 6 ILE A 229 ASP A 231 0 SHEET 2 AA4 6 GLY A 326 GLY A 329 1 O VAL A 328 N ILE A 229 SHEET 3 AA4 6 LEU A 237 VAL A 240 -1 N TRP A 238 O ILE A 327 SHEET 4 AA4 6 HIS A 295 SER A 307 1 O GLY A 303 N LEU A 237 SHEET 5 AA4 6 GLY A 279 LEU A 292 -1 N PHE A 290 O VAL A 297 SHEET 6 AA4 6 LEU A 272 PHE A 276 -1 N ILE A 274 O ILE A 281 SHEET 1 AA5 4 LYS A 408 CYS A 411 0 SHEET 2 AA5 4 GLY A 402 VAL A 405 -1 N ILE A 403 O ILE A 410 SHEET 3 AA5 4 ILE A 461 PHE A 465 -1 O LYS A 462 N TYR A 404 SHEET 4 AA5 4 LEU A 468 LEU A 472 -1 O ILE A 470 N TYR A 463 SHEET 1 AA6 2 ASN A 427 THR A 428 0 SHEET 2 AA6 2 TYR A 489 MET A 490 1 O MET A 490 N ASN A 427 SHEET 1 AA7 3 ALA A 444 PRO A 445 0 SHEET 2 AA7 3 SER A 484 PRO A 487 -1 O CYS A 485 N ALA A 444 SHEET 3 AA7 3 MET A 478 LEU A 480 -1 N ILE A 479 O ILE A 486 SSBOND 1 CYS A 244 CYS A 249 1555 1555 2.03 SSBOND 2 CYS A 411 CYS A 412 1555 1555 2.03 SSBOND 3 CYS A 446 CYS A 485 1555 1555 2.03 LINK ND2 ASN A 299 C1 NAG A 703 1555 1555 1.44 CISPEP 1 VAL A 221 PRO A 222 0 -4.85 CISPEP 2 CYS A 411 CYS A 412 0 6.94 CRYST1 136.299 136.299 45.946 90.00 90.00 120.00 P 63 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007337 0.004236 0.000000 0.00000 SCALE2 0.000000 0.008472 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021765 0.00000