HEADER SIGNALING PROTEIN 29-AUG-23 8U0I TITLE CRYSTAL STRUCTURE OF PA0012 COMPLEXED WITH CYCLIC-DI-GMP FROM TITLE 2 PSEUDOMONAS AERUGINOSA COMPND MOL_ID: 1; COMPND 2 MOLECULE: PILZ DOMAIN-CONTAINING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA PA14; SOURCE 3 ORGANISM_TAXID: 652611; SOURCE 4 GENE: PA0012; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: K-12; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET21A KEYWDS COMPLEX, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR N.A.HAMMONS,N.J.SCHNICKER,E.J.FUENTES REVDAT 1 04-SEP-24 8U0I 0 JRNL AUTH N.A.HAMMONS,N.J.SCHNICKER,E.J.FUENTES JRNL TITL CRYSTAL STRUCTURE OF PA0012 COMPLEXED WITH CYCLIC-DI-GMP JRNL TITL 2 FROM PSEUDOMONAS AERUGINOSA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.54 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0425 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.54 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.99 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 17885 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.881 REMARK 3 FREE R VALUE TEST SET COUNT : 873 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.54 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.58 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1250 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.85 REMARK 3 BIN R VALUE (WORKING SET) : 0.3010 REMARK 3 BIN FREE R VALUE SET COUNT : 51 REMARK 3 BIN FREE R VALUE : 0.2680 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 663 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 110 REMARK 3 SOLVENT ATOMS : 91 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.63100 REMARK 3 B22 (A**2) : 0.63100 REMARK 3 B33 (A**2) : -1.26200 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.069 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.074 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.055 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.612 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.957 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 803 ; 0.012 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 721 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1115 ; 2.048 ; 1.837 REMARK 3 BOND ANGLES OTHERS (DEGREES): 1672 ; 0.744 ; 1.747 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 90 ; 6.885 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 6 ; 4.335 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 118 ;10.457 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 134 ; 0.113 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 866 ; 0.012 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 162 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 119 ; 0.191 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 45 ; 0.211 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 387 ; 0.184 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 62 ; 0.174 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 346 ; 2.629 ; 2.425 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 345 ; 2.628 ; 2.418 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 433 ; 3.931 ; 4.319 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 433 ; 3.928 ; 4.318 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 457 ; 3.889 ; 2.806 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 458 ; 3.890 ; 2.808 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 679 ; 5.714 ; 4.929 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 680 ; 5.709 ; 4.930 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 8U0I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-AUG-23. REMARK 100 THE DEPOSITION ID IS D_1000276175. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-MAR-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0004 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 S 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17945 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.540 REMARK 200 RESOLUTION RANGE LOW (A) : 43.990 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 39.20 REMARK 200 R MERGE (I) : 0.08100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.54 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.57 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 32.90 REMARK 200 R MERGE FOR SHELL (I) : 1.06400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5.3 MG/ML PA0012 AND 2.5 MM CYCLIC-DI REMARK 280 -GMP. 0.2 M NH4SO4, 15% (W/V) PEG4000, 0.1 M TRI-NACIT PH=5.6, REMARK 280 PH 5.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 45.29800 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 25.15850 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 25.15850 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 67.94700 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 25.15850 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 25.15850 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 22.64900 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 25.15850 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 25.15850 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 67.94700 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 25.15850 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 25.15850 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 22.64900 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 45.29800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 216 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 ALA A 0 REMARK 465 MET A 1 REMARK 465 ALA A 88 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 6 CG CD OE1 NE2 REMARK 470 GLU A 87 CA C O CB CG CD OE1 REMARK 470 GLU A 87 OE2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ARG A 17 CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HD1 HIS A 42 H ASP A 44 1.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A 17 NE ARG A 17 CZ 0.237 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 17 CD - NE - CZ ANGL. DEV. = -20.6 DEGREES REMARK 500 ARG A 17 NE - CZ - NH1 ANGL. DEV. = -8.8 DEGREES REMARK 500 ARG A 17 NE - CZ - NH2 ANGL. DEV. = 7.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 42 131.03 -172.89 REMARK 500 REMARK 500 REMARK: NULL DBREF 8U0I A 1 88 UNP Q9I7B4 Q9I7B4_PSEAE 1 88 SEQADV 8U0I GLY A -1 UNP Q9I7B4 EXPRESSION TAG SEQADV 8U0I ALA A 0 UNP Q9I7B4 EXPRESSION TAG SEQRES 1 A 90 GLY ALA MET ASP ASN GLN ARG GLN TYR PRO ARG THR PRO SEQRES 2 A 90 LEU LYS CYS ARG ILE ARG ILE SER HIS PRO LEU PHE GLY SEQRES 3 A 90 GLU LEU MET ALA GLN THR ARG ASP LEU SER ASP THR GLY SEQRES 4 A 90 VAL TYR VAL LYS HIS PRO ASP LEU THR GLN LEU PRO THR SEQRES 5 A 90 GLY SER VAL VAL THR GLY GLN VAL GLN ASP LEU PRO ILE SEQRES 6 A 90 ASP ALA PRO ILE LEU GLN MET GLU VAL VAL ARG VAL ASP SEQRES 7 A 90 ALA GLU GLY VAL GLY LEU ARG PHE LEU SER GLU ALA HET C2E A 101 68 HET C2E A 102 68 HET GOL A 103 14 HET GOL A 104 14 HET GOL A 105 14 HETNAM C2E 9,9'-[(2R,3R,3AS,5S,7AR,9R,10R,10AS,12S,14AR)-3,5,10, HETNAM 2 C2E 12-TETRAHYDROXY-5,12-DIOXIDOOCTAHYDRO-2H,7H-DIFURO[3, HETNAM 3 C2E 2-D:3',2'-J][1,3,7,9,2, HETNAM 4 C2E 8]TETRAOXADIPHOSPHACYCLODODECINE-2,9-DIYL]BIS(2-AMINO- HETNAM 5 C2E 1,9-DIHYDRO-6H-PURIN-6-ONE) HETNAM GOL GLYCEROL HETSYN C2E C-DI-GMP; CYCLIC DIGUANOSINE MONOPHOSPHATE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 C2E 2(C20 H24 N10 O14 P2) FORMUL 4 GOL 3(C3 H8 O3) FORMUL 7 HOH *91(H2 O) HELIX 1 AA1 PRO A 43 THR A 46 5 4 SHEET 1 AA1 8 THR A 10 PRO A 11 0 SHEET 2 AA1 8 GLY A 24 LEU A 33 -1 O LEU A 33 N THR A 10 SHEET 3 AA1 8 GLY A 37 LYS A 41 -1 O LYS A 41 N GLN A 29 SHEET 4 AA1 8 GLY A 79 PHE A 84 -1 O LEU A 82 N VAL A 38 SHEET 5 AA1 8 LEU A 68 VAL A 75 -1 N GLU A 71 O ARG A 83 SHEET 6 AA1 8 VAL A 53 VAL A 58 -1 N VAL A 54 O MET A 70 SHEET 7 AA1 8 ARG A 15 HIS A 20 -1 N ARG A 17 O GLN A 57 SHEET 8 AA1 8 GLY A 24 LEU A 33 -1 O ALA A 28 N ILE A 16 CRYST1 50.317 50.317 90.596 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019874 0.000000 0.000000 0.00000 SCALE2 0.000000 0.019874 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011038 0.00000 CONECT 1365 1366 1367 1368 1396 CONECT 1366 1365 CONECT 1367 1365 CONECT 1368 1365 1369 CONECT 1369 1368 1370 1411 1412 CONECT 1370 1369 1371 1372 1413 CONECT 1371 1370 1376 CONECT 1372 1370 1373 1374 1414 CONECT 1373 1372 1388 CONECT 1374 1372 1375 1376 1415 CONECT 1375 1374 1416 CONECT 1376 1371 1374 1377 1417 CONECT 1377 1376 1378 1387 CONECT 1378 1377 1379 1418 CONECT 1379 1378 1380 CONECT 1380 1379 1381 1387 CONECT 1381 1380 1382 1383 CONECT 1382 1381 CONECT 1383 1381 1384 1419 CONECT 1384 1383 1385 1386 CONECT 1385 1384 1420 1421 CONECT 1386 1384 1387 CONECT 1387 1377 1380 1386 CONECT 1388 1373 1389 1390 1391 CONECT 1389 1388 CONECT 1390 1388 CONECT 1391 1388 1392 CONECT 1392 1391 1393 1422 1423 CONECT 1393 1392 1394 1395 1424 CONECT 1394 1393 1399 CONECT 1395 1393 1396 1397 1425 CONECT 1396 1365 1395 CONECT 1397 1395 1398 1399 1426 CONECT 1398 1397 1427 CONECT 1399 1394 1397 1400 1428 CONECT 1400 1399 1401 1410 CONECT 1401 1400 1402 1429 CONECT 1402 1401 1403 CONECT 1403 1402 1404 1410 CONECT 1404 1403 1405 1406 CONECT 1405 1404 CONECT 1406 1404 1407 1430 CONECT 1407 1406 1408 1409 CONECT 1408 1407 1431 1432 CONECT 1409 1407 1410 CONECT 1410 1400 1403 1409 CONECT 1411 1369 CONECT 1412 1369 CONECT 1413 1370 CONECT 1414 1372 CONECT 1415 1374 CONECT 1416 1375 CONECT 1417 1376 CONECT 1418 1378 CONECT 1419 1383 CONECT 1420 1385 CONECT 1421 1385 CONECT 1422 1392 CONECT 1423 1392 CONECT 1424 1393 CONECT 1425 1395 CONECT 1426 1397 CONECT 1427 1398 CONECT 1428 1399 CONECT 1429 1401 CONECT 1430 1406 CONECT 1431 1408 CONECT 1432 1408 CONECT 1433 1434 1435 1436 1464 CONECT 1434 1433 CONECT 1435 1433 CONECT 1436 1433 1437 CONECT 1437 1436 1438 1479 1480 CONECT 1438 1437 1439 1440 1481 CONECT 1439 1438 1444 CONECT 1440 1438 1441 1442 1482 CONECT 1441 1440 1456 CONECT 1442 1440 1443 1444 1483 CONECT 1443 1442 1484 CONECT 1444 1439 1442 1445 1485 CONECT 1445 1444 1446 1455 CONECT 1446 1445 1447 1486 CONECT 1447 1446 1448 CONECT 1448 1447 1449 1455 CONECT 1449 1448 1450 1451 CONECT 1450 1449 CONECT 1451 1449 1452 1487 CONECT 1452 1451 1453 1454 CONECT 1453 1452 1488 1489 CONECT 1454 1452 1455 CONECT 1455 1445 1448 1454 CONECT 1456 1441 1457 1458 1459 CONECT 1457 1456 CONECT 1458 1456 CONECT 1459 1456 1460 CONECT 1460 1459 1461 1490 1491 CONECT 1461 1460 1462 1463 1492 CONECT 1462 1461 1467 CONECT 1463 1461 1464 1465 1493 CONECT 1464 1433 1463 CONECT 1465 1463 1466 1467 1494 CONECT 1466 1465 1495 CONECT 1467 1462 1465 1468 1496 CONECT 1468 1467 1469 1478 CONECT 1469 1468 1470 1497 CONECT 1470 1469 1471 CONECT 1471 1470 1472 1478 CONECT 1472 1471 1473 1474 CONECT 1473 1472 CONECT 1474 1472 1475 1498 CONECT 1475 1474 1476 1477 CONECT 1476 1475 1499 1500 CONECT 1477 1475 1478 CONECT 1478 1468 1471 1477 CONECT 1479 1437 CONECT 1480 1437 CONECT 1481 1438 CONECT 1482 1440 CONECT 1483 1442 CONECT 1484 1443 CONECT 1485 1444 CONECT 1486 1446 CONECT 1487 1451 CONECT 1488 1453 CONECT 1489 1453 CONECT 1490 1460 CONECT 1491 1460 CONECT 1492 1461 CONECT 1493 1463 CONECT 1494 1465 CONECT 1495 1466 CONECT 1496 1467 CONECT 1497 1469 CONECT 1498 1474 CONECT 1499 1476 CONECT 1500 1476 CONECT 1501 1502 1503 1507 1508 CONECT 1502 1501 1509 CONECT 1503 1501 1504 1505 1510 CONECT 1504 1503 1511 CONECT 1505 1503 1506 1512 1513 CONECT 1506 1505 1514 CONECT 1507 1501 CONECT 1508 1501 CONECT 1509 1502 CONECT 1510 1503 CONECT 1511 1504 CONECT 1512 1505 CONECT 1513 1505 CONECT 1514 1506 CONECT 1515 1516 1517 1521 1522 CONECT 1516 1515 1523 CONECT 1517 1515 1518 1519 1524 CONECT 1518 1517 1525 CONECT 1519 1517 1520 1526 1527 CONECT 1520 1519 1528 CONECT 1521 1515 CONECT 1522 1515 CONECT 1523 1516 CONECT 1524 1517 CONECT 1525 1518 CONECT 1526 1519 CONECT 1527 1519 CONECT 1528 1520 CONECT 1529 1530 1531 1535 1536 CONECT 1530 1529 1537 CONECT 1531 1529 1532 1533 1538 CONECT 1532 1531 1539 CONECT 1533 1531 1534 1540 1541 CONECT 1534 1533 1542 CONECT 1535 1529 CONECT 1536 1529 CONECT 1537 1530 CONECT 1538 1531 CONECT 1539 1532 CONECT 1540 1533 CONECT 1541 1533 CONECT 1542 1534 MASTER 357 0 5 1 8 0 0 6 864 1 178 7 END