HEADER HYDROLASE 31-AUG-23 8U1E TITLE APO PROTEIN TYROSINE PHOSPHATASE 1B (PTP1B) AT HIGH RESOLUTION (1.43 TITLE 2 A) IN SPACE GROUP P43212 WITH TWO DISTINCTLY ORDERED CHAINS COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROSINE-PROTEIN PHOSPHATASE NON-RECEPTOR TYPE 1; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PTPN1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HIGHEST RESOLUTION APO-PTP1B STRUCTURE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.SHARMA,S.T.MEHLMAN,D.A.KEEDY REVDAT 4 01-MAY-24 8U1E 1 AUTHOR JRNL REVDAT 3 24-JAN-24 8U1E 1 JRNL REVDAT 2 10-JAN-24 8U1E 1 JRNL REVDAT 1 27-SEP-23 8U1E 0 JRNL AUTH S.SHARMA,T.SKAIST MEHLMAN,R.S.SAGABALA,B.BOIVIN,D.A.KEEDY JRNL TITL HIGH-RESOLUTION DOUBLE VISION OF THE ALLOSTERIC PHOSPHATASE JRNL TITL 2 PTP1B. JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 80 1 2024 JRNL REFN ESSN 2053-230X JRNL PMID 38133579 JRNL DOI 10.1107/S2053230X23010749 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.SHARMA,S.T.MEHLMAN,D.A.KEEDY REMARK 1 TITL HIGH-RESOLUTION DOUBLE VISION OF THE ARCHETYPAL PROTEIN REMARK 1 TITL 2 TYROSINE PHOSPHATASE REMARK 1 REF BIORXIV 2023 REMARK 1 REFN ISSN 2692-8205 REMARK 1 DOI 10.1101/2023.09.12.557361 REMARK 2 REMARK 2 RESOLUTION. 1.43 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.43 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.59 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 117036 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.152 REMARK 3 R VALUE (WORKING SET) : 0.150 REMARK 3 FREE R VALUE : 0.203 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5855 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 30.5900 - 4.4400 0.99 4103 220 0.1494 0.1896 REMARK 3 2 4.4400 - 3.5300 1.00 3940 194 0.1268 0.1501 REMARK 3 3 3.5200 - 3.0800 1.00 3860 210 0.1460 0.1913 REMARK 3 4 3.0800 - 2.8000 1.00 3857 190 0.1462 0.2219 REMARK 3 5 2.8000 - 2.6000 1.00 3813 207 0.1412 0.2102 REMARK 3 6 2.6000 - 2.4400 1.00 3823 197 0.1233 0.1772 REMARK 3 7 2.4400 - 2.3200 1.00 3782 194 0.1200 0.2014 REMARK 3 8 2.3200 - 2.2200 1.00 3796 215 0.1191 0.1683 REMARK 3 9 2.2200 - 2.1400 1.00 3775 209 0.1263 0.1774 REMARK 3 10 2.1400 - 2.0600 1.00 3779 184 0.1369 0.1997 REMARK 3 11 2.0600 - 2.0000 1.00 3771 201 0.1354 0.2025 REMARK 3 12 2.0000 - 1.9400 1.00 3789 183 0.1301 0.2113 REMARK 3 13 1.9400 - 1.8900 1.00 3749 229 0.1335 0.2052 REMARK 3 14 1.8900 - 1.8400 1.00 3729 184 0.1431 0.1887 REMARK 3 15 1.8400 - 1.8000 1.00 3756 212 0.1619 0.2172 REMARK 3 16 1.8000 - 1.7600 1.00 3790 164 0.1964 0.2963 REMARK 3 17 1.7600 - 1.7300 1.00 3739 208 0.2034 0.2899 REMARK 3 18 1.7300 - 1.7000 1.00 3741 185 0.1968 0.2612 REMARK 3 19 1.7000 - 1.6700 1.00 3751 192 0.2003 0.2577 REMARK 3 20 1.6700 - 1.6400 1.00 3771 197 0.2017 0.2399 REMARK 3 21 1.6400 - 1.6100 1.00 3741 197 0.2040 0.2821 REMARK 3 22 1.6100 - 1.5900 1.00 3750 199 0.2143 0.2827 REMARK 3 23 1.5900 - 1.5600 0.98 3631 213 0.2481 0.3377 REMARK 3 24 1.5600 - 1.5400 0.98 3672 208 0.2591 0.3248 REMARK 3 25 1.5400 - 1.5200 0.97 3603 184 0.2870 0.3457 REMARK 3 26 1.5200 - 1.5000 0.96 3580 210 0.3033 0.3168 REMARK 3 27 1.5000 - 1.4800 0.94 3538 189 0.3159 0.3628 REMARK 3 28 1.4800 - 1.4600 0.91 3393 189 0.3354 0.3730 REMARK 3 29 1.4600 - 1.4500 0.84 3148 157 0.3622 0.3952 REMARK 3 30 1.4500 - 1.4300 0.80 3011 134 0.3606 0.4167 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.231 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.587 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.84 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.72 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 5214 REMARK 3 ANGLE : 1.041 7093 REMARK 3 CHIRALITY : 0.079 743 REMARK 3 PLANARITY : 0.011 936 REMARK 3 DIHEDRAL : 5.574 726 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8U1E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-SEP-23. REMARK 100 THE DEPOSITION ID IS D_1000276841. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-OCT-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS-II REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9686 REMARK 200 MONOCHROMATOR : M REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS 3.71 REMARK 200 DATA SCALING SOFTWARE : DIALS 3.7.1 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 119377 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.430 REMARK 200 RESOLUTION RANGE LOW (A) : 30.590 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 25.60 REMARK 200 R MERGE (I) : 0.14700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.8200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.43 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.48 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.3 REMARK 200 DATA REDUNDANCY IN SHELL : 25.70 REMARK 200 R MERGE FOR SHELL (I) : 9.77700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.310 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.3 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MGCL2, 0.1 M HEPES PH 7.0, 15% REMARK 280 W/V PEG 4000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 81.50050 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 44.20600 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 44.20600 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 122.25075 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 44.20600 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 44.20600 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 40.75025 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 44.20600 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 44.20600 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 122.25075 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 44.20600 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 44.20600 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 40.75025 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 81.50050 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 629 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 MET A 282 REMARK 465 GLY A 283 REMARK 465 ASP A 284 REMARK 465 SER A 285 REMARK 465 SER A 286 REMARK 465 VAL A 287 REMARK 465 GLN A 288 REMARK 465 ASP A 289 REMARK 465 GLN A 290 REMARK 465 TRP A 291 REMARK 465 LYS A 292 REMARK 465 GLU A 293 REMARK 465 LEU A 294 REMARK 465 SER A 295 REMARK 465 HIS A 296 REMARK 465 GLU A 297 REMARK 465 ASP A 298 REMARK 465 LEU A 299 REMARK 465 GLU A 300 REMARK 465 PRO A 301 REMARK 465 PRO A 302 REMARK 465 PRO A 303 REMARK 465 GLU A 304 REMARK 465 HIS A 305 REMARK 465 ILE A 306 REMARK 465 PRO A 307 REMARK 465 PRO A 308 REMARK 465 PRO A 309 REMARK 465 PRO A 310 REMARK 465 ARG A 311 REMARK 465 PRO A 312 REMARK 465 PRO A 313 REMARK 465 LYS A 314 REMARK 465 ARG A 315 REMARK 465 ILE A 316 REMARK 465 LEU A 317 REMARK 465 GLU A 318 REMARK 465 PRO A 319 REMARK 465 HIS A 320 REMARK 465 ASN A 321 REMARK 465 LEU A 322 REMARK 465 GLU A 323 REMARK 465 HIS A 324 REMARK 465 HIS A 325 REMARK 465 HIS A 326 REMARK 465 HIS A 327 REMARK 465 HIS A 328 REMARK 465 HIS A 329 REMARK 465 MET B 0 REMARK 465 SER B 285 REMARK 465 SER B 286 REMARK 465 VAL B 287 REMARK 465 GLN B 288 REMARK 465 ASP B 289 REMARK 465 GLN B 290 REMARK 465 TRP B 291 REMARK 465 LYS B 292 REMARK 465 GLU B 293 REMARK 465 LEU B 294 REMARK 465 SER B 295 REMARK 465 HIS B 296 REMARK 465 GLU B 297 REMARK 465 ASP B 298 REMARK 465 LEU B 299 REMARK 465 GLU B 300 REMARK 465 PRO B 301 REMARK 465 PRO B 302 REMARK 465 PRO B 303 REMARK 465 GLU B 304 REMARK 465 HIS B 305 REMARK 465 ILE B 306 REMARK 465 PRO B 307 REMARK 465 PRO B 308 REMARK 465 PRO B 309 REMARK 465 PRO B 310 REMARK 465 ARG B 311 REMARK 465 PRO B 312 REMARK 465 PRO B 313 REMARK 465 LYS B 314 REMARK 465 ARG B 315 REMARK 465 ILE B 316 REMARK 465 LEU B 317 REMARK 465 GLU B 318 REMARK 465 PRO B 319 REMARK 465 HIS B 320 REMARK 465 ASN B 321 REMARK 465 LEU B 322 REMARK 465 GLU B 323 REMARK 465 HIS B 324 REMARK 465 HIS B 325 REMARK 465 HIS B 326 REMARK 465 HIS B 327 REMARK 465 HIS B 328 REMARK 465 HIS B 329 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLU A 75 HE21 GLN A 78 1.49 REMARK 500 O GLU A 75 HE21 GLN A 78 1.50 REMARK 500 OE2 GLU B 252 O HOH B 601 2.10 REMARK 500 O HOH B 762 O HOH B 786 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU B 200 OE2 GLU B 200 7555 2.02 REMARK 500 O HOH B 773 O HOH B 775 6445 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP B 11 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 63 175.44 173.25 REMARK 500 CYS A 121 137.92 -179.88 REMARK 500 CYS A 215 -134.70 -125.05 REMARK 500 ILE A 219 -36.35 -136.85 REMARK 500 ILE A 261 104.52 73.78 REMARK 500 ILE A 261 104.52 74.05 REMARK 500 ASP B 63 178.86 176.83 REMARK 500 CYS B 121 146.01 -170.65 REMARK 500 CYS B 215 -126.52 -128.01 REMARK 500 CYS B 215 -127.54 -126.83 REMARK 500 ILE B 219 -34.19 -134.23 REMARK 500 ILE B 261 109.26 73.91 REMARK 500 ILE B 261 109.80 73.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 831 DISTANCE = 5.83 ANGSTROMS REMARK 525 HOH B 832 DISTANCE = 5.98 ANGSTROMS REMARK 525 HOH B 833 DISTANCE = 6.80 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 516 O REMARK 620 2 HOH A 519 O 81.3 REMARK 620 3 HOH A 582 O 74.1 77.7 REMARK 620 4 HOH A 650 O 87.7 86.0 157.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 501 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 602 O REMARK 620 2 HOH B 608 O 94.1 REMARK 620 3 HOH B 782 O 96.6 83.6 REMARK 620 4 HOH B 791 O 91.5 89.3 169.6 REMARK 620 5 HOH B 811 O 172.3 93.5 83.2 89.7 REMARK 620 6 HOH B 827 O 88.5 174.0 101.5 85.2 84.0 REMARK 620 N 1 2 3 4 5 DBREF 8U1E A 1 321 UNP P18031 PTN1_HUMAN 1 321 DBREF 8U1E B 1 321 UNP P18031 PTN1_HUMAN 1 321 SEQADV 8U1E MET A 0 UNP P18031 INITIATING METHIONINE SEQADV 8U1E LEU A 322 UNP P18031 EXPRESSION TAG SEQADV 8U1E GLU A 323 UNP P18031 EXPRESSION TAG SEQADV 8U1E HIS A 324 UNP P18031 EXPRESSION TAG SEQADV 8U1E HIS A 325 UNP P18031 EXPRESSION TAG SEQADV 8U1E HIS A 326 UNP P18031 EXPRESSION TAG SEQADV 8U1E HIS A 327 UNP P18031 EXPRESSION TAG SEQADV 8U1E HIS A 328 UNP P18031 EXPRESSION TAG SEQADV 8U1E HIS A 329 UNP P18031 EXPRESSION TAG SEQADV 8U1E MET B 0 UNP P18031 INITIATING METHIONINE SEQADV 8U1E LEU B 322 UNP P18031 EXPRESSION TAG SEQADV 8U1E GLU B 323 UNP P18031 EXPRESSION TAG SEQADV 8U1E HIS B 324 UNP P18031 EXPRESSION TAG SEQADV 8U1E HIS B 325 UNP P18031 EXPRESSION TAG SEQADV 8U1E HIS B 326 UNP P18031 EXPRESSION TAG SEQADV 8U1E HIS B 327 UNP P18031 EXPRESSION TAG SEQADV 8U1E HIS B 328 UNP P18031 EXPRESSION TAG SEQADV 8U1E HIS B 329 UNP P18031 EXPRESSION TAG SEQRES 1 A 330 MET MET GLU MET GLU LYS GLU PHE GLU GLN ILE ASP LYS SEQRES 2 A 330 SER GLY SER TRP ALA ALA ILE TYR GLN ASP ILE ARG HIS SEQRES 3 A 330 GLU ALA SER ASP PHE PRO CYS ARG VAL ALA LYS LEU PRO SEQRES 4 A 330 LYS ASN LYS ASN ARG ASN ARG TYR ARG ASP VAL SER PRO SEQRES 5 A 330 PHE ASP HIS SER ARG ILE LYS LEU HIS GLN GLU ASP ASN SEQRES 6 A 330 ASP TYR ILE ASN ALA SER LEU ILE LYS MET GLU GLU ALA SEQRES 7 A 330 GLN ARG SER TYR ILE LEU THR GLN GLY PRO LEU PRO ASN SEQRES 8 A 330 THR CYS GLY HIS PHE TRP GLU MET VAL TRP GLU GLN LYS SEQRES 9 A 330 SER ARG GLY VAL VAL MET LEU ASN ARG VAL MET GLU LYS SEQRES 10 A 330 GLY SER LEU LYS CYS ALA GLN TYR TRP PRO GLN LYS GLU SEQRES 11 A 330 GLU LYS GLU MET ILE PHE GLU ASP THR ASN LEU LYS LEU SEQRES 12 A 330 THR LEU ILE SER GLU ASP ILE LYS SER TYR TYR THR VAL SEQRES 13 A 330 ARG GLN LEU GLU LEU GLU ASN LEU THR THR GLN GLU THR SEQRES 14 A 330 ARG GLU ILE LEU HIS PHE HIS TYR THR THR TRP PRO ASP SEQRES 15 A 330 PHE GLY VAL PRO GLU SER PRO ALA SER PHE LEU ASN PHE SEQRES 16 A 330 LEU PHE LYS VAL ARG GLU SER GLY SER LEU SER PRO GLU SEQRES 17 A 330 HIS GLY PRO VAL VAL VAL HIS CYS SER ALA GLY ILE GLY SEQRES 18 A 330 ARG SER GLY THR PHE CYS LEU ALA ASP THR CYS LEU LEU SEQRES 19 A 330 LEU MET ASP LYS ARG LYS ASP PRO SER SER VAL ASP ILE SEQRES 20 A 330 LYS LYS VAL LEU LEU GLU MET ARG LYS PHE ARG MET GLY SEQRES 21 A 330 LEU ILE GLN THR ALA ASP GLN LEU ARG PHE SER TYR LEU SEQRES 22 A 330 ALA VAL ILE GLU GLY ALA LYS PHE ILE MET GLY ASP SER SEQRES 23 A 330 SER VAL GLN ASP GLN TRP LYS GLU LEU SER HIS GLU ASP SEQRES 24 A 330 LEU GLU PRO PRO PRO GLU HIS ILE PRO PRO PRO PRO ARG SEQRES 25 A 330 PRO PRO LYS ARG ILE LEU GLU PRO HIS ASN LEU GLU HIS SEQRES 26 A 330 HIS HIS HIS HIS HIS SEQRES 1 B 330 MET MET GLU MET GLU LYS GLU PHE GLU GLN ILE ASP LYS SEQRES 2 B 330 SER GLY SER TRP ALA ALA ILE TYR GLN ASP ILE ARG HIS SEQRES 3 B 330 GLU ALA SER ASP PHE PRO CYS ARG VAL ALA LYS LEU PRO SEQRES 4 B 330 LYS ASN LYS ASN ARG ASN ARG TYR ARG ASP VAL SER PRO SEQRES 5 B 330 PHE ASP HIS SER ARG ILE LYS LEU HIS GLN GLU ASP ASN SEQRES 6 B 330 ASP TYR ILE ASN ALA SER LEU ILE LYS MET GLU GLU ALA SEQRES 7 B 330 GLN ARG SER TYR ILE LEU THR GLN GLY PRO LEU PRO ASN SEQRES 8 B 330 THR CYS GLY HIS PHE TRP GLU MET VAL TRP GLU GLN LYS SEQRES 9 B 330 SER ARG GLY VAL VAL MET LEU ASN ARG VAL MET GLU LYS SEQRES 10 B 330 GLY SER LEU LYS CYS ALA GLN TYR TRP PRO GLN LYS GLU SEQRES 11 B 330 GLU LYS GLU MET ILE PHE GLU ASP THR ASN LEU LYS LEU SEQRES 12 B 330 THR LEU ILE SER GLU ASP ILE LYS SER TYR TYR THR VAL SEQRES 13 B 330 ARG GLN LEU GLU LEU GLU ASN LEU THR THR GLN GLU THR SEQRES 14 B 330 ARG GLU ILE LEU HIS PHE HIS TYR THR THR TRP PRO ASP SEQRES 15 B 330 PHE GLY VAL PRO GLU SER PRO ALA SER PHE LEU ASN PHE SEQRES 16 B 330 LEU PHE LYS VAL ARG GLU SER GLY SER LEU SER PRO GLU SEQRES 17 B 330 HIS GLY PRO VAL VAL VAL HIS CYS SER ALA GLY ILE GLY SEQRES 18 B 330 ARG SER GLY THR PHE CYS LEU ALA ASP THR CYS LEU LEU SEQRES 19 B 330 LEU MET ASP LYS ARG LYS ASP PRO SER SER VAL ASP ILE SEQRES 20 B 330 LYS LYS VAL LEU LEU GLU MET ARG LYS PHE ARG MET GLY SEQRES 21 B 330 LEU ILE GLN THR ALA ASP GLN LEU ARG PHE SER TYR LEU SEQRES 22 B 330 ALA VAL ILE GLU GLY ALA LYS PHE ILE MET GLY ASP SER SEQRES 23 B 330 SER VAL GLN ASP GLN TRP LYS GLU LEU SER HIS GLU ASP SEQRES 24 B 330 LEU GLU PRO PRO PRO GLU HIS ILE PRO PRO PRO PRO ARG SEQRES 25 B 330 PRO PRO LYS ARG ILE LEU GLU PRO HIS ASN LEU GLU HIS SEQRES 26 B 330 HIS HIS HIS HIS HIS HET MG A 401 1 HET MG B 501 1 HETNAM MG MAGNESIUM ION FORMUL 3 MG 2(MG 2+) FORMUL 5 HOH *389(H2 O) HELIX 1 AA1 GLU A 2 GLY A 14 1 13 HELIX 2 AA2 SER A 15 ALA A 27 1 13 HELIX 3 AA3 ARG A 33 ASN A 44 5 12 HELIX 4 AA4 THR A 91 LYS A 103 1 13 HELIX 5 AA5 PRO A 188 SER A 201 1 14 HELIX 6 AA6 GLY A 220 ARG A 238 1 19 HELIX 7 AA7 ASP A 240 VAL A 244 5 5 HELIX 8 AA8 ASP A 245 ARG A 254 1 10 HELIX 9 AA9 THR A 263 LYS A 279 1 17 HELIX 10 AB1 GLU B 2 GLY B 14 1 13 HELIX 11 AB2 SER B 15 ALA B 27 1 13 HELIX 12 AB3 LEU B 37 ASN B 44 5 8 HELIX 13 AB4 THR B 91 LYS B 103 1 13 HELIX 14 AB5 PRO B 188 SER B 201 1 14 HELIX 15 AB6 GLY B 220 ARG B 238 1 19 HELIX 16 AB7 ASP B 240 VAL B 244 5 5 HELIX 17 AB8 ASP B 245 ARG B 254 1 10 HELIX 18 AB9 THR B 263 GLY B 283 1 21 SHEET 1 AA1 9 ARG A 56 LYS A 58 0 SHEET 2 AA1 9 TYR A 66 MET A 74 -1 O ALA A 69 N ILE A 57 SHEET 3 AA1 9 ARG A 79 THR A 84 -1 O TYR A 81 N ILE A 72 SHEET 4 AA1 9 VAL A 211 HIS A 214 1 O VAL A 213 N ILE A 82 SHEET 5 AA1 9 GLY A 106 MET A 109 1 N VAL A 108 O VAL A 212 SHEET 6 AA1 9 THR A 168 TYR A 176 1 O PHE A 174 N VAL A 107 SHEET 7 AA1 9 TYR A 153 ASN A 162 -1 N THR A 154 O HIS A 175 SHEET 8 AA1 9 LEU A 140 ILE A 149 -1 N LYS A 141 O GLU A 161 SHEET 9 AA1 9 MET A 133 PHE A 135 -1 N PHE A 135 O LEU A 140 SHEET 1 AA2 9 ARG B 56 LYS B 58 0 SHEET 2 AA2 9 TYR B 66 MET B 74 -1 O ALA B 69 N ILE B 57 SHEET 3 AA2 9 ARG B 79 THR B 84 -1 O ARG B 79 N MET B 74 SHEET 4 AA2 9 VAL B 211 HIS B 214 1 O VAL B 213 N ILE B 82 SHEET 5 AA2 9 GLY B 106 MET B 109 1 N VAL B 108 O VAL B 212 SHEET 6 AA2 9 THR B 168 TYR B 176 1 O PHE B 174 N VAL B 107 SHEET 7 AA2 9 TYR B 153 ASN B 162 -1 N LEU B 158 O ILE B 171 SHEET 8 AA2 9 LEU B 140 ILE B 149 -1 N LYS B 141 O GLU B 161 SHEET 9 AA2 9 MET B 133 PHE B 135 -1 N PHE B 135 O LEU B 140 SHEET 1 AA3 2 MET B 114 GLU B 115 0 SHEET 2 AA3 2 SER B 118 LEU B 119 -1 O SER B 118 N GLU B 115 LINK MG MG A 401 O HOH A 516 1555 1555 1.96 LINK MG MG A 401 O HOH A 519 1555 6455 2.46 LINK MG MG A 401 O HOH A 582 1555 6455 2.86 LINK MG MG A 401 O HOH A 650 1555 1555 2.09 LINK MG MG B 501 O HOH B 602 1555 1555 1.97 LINK MG MG B 501 O HOH B 608 1555 1555 2.07 LINK MG MG B 501 O HOH B 782 1555 1555 2.17 LINK MG MG B 501 O HOH B 791 1555 1555 2.39 LINK MG MG B 501 O HOH B 811 1555 1555 2.02 LINK MG MG B 501 O HOH B 827 1555 1555 2.00 CRYST1 88.412 88.412 163.001 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011311 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011311 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006135 0.00000