HEADER SIGNALING PROTEIN/IMMUNE SYSTEM 11-SEP-23 8U4R TITLE STRUCTURE OF REGN7663-FAB BOUND CXCR4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: REGN7663 FAB LIGHT CHAIN; COMPND 3 CHAIN: L; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: REGN7663 FAB HEAVY CHAIN; COMPND 7 CHAIN: H; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: C-X-C CHEMOKINE RECEPTOR TYPE 4; COMPND 11 CHAIN: R; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 6 EXPRESSION_SYSTEM_COMMON: CHINESE HAMSTER; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 10029; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 13 EXPRESSION_SYSTEM_COMMON: CHINESE HAMSTER; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 10029; SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 17 ORGANISM_COMMON: HUMAN; SOURCE 18 ORGANISM_TAXID: 9606; SOURCE 19 GENE: CXCR4; SOURCE 20 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 21 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 22 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS GPCR, CHEMOKINE RECEPTOR, ANTIBODY, FAB, SIGNALING PROTEIN-IMMUNE KEYWDS 2 SYSTEM COMPLEX EXPDTA ELECTRON MICROSCOPY AUTHOR K.SAOTOME,L.L.MCGOLDRICK,M.C.FRANKLIN REVDAT 1 13-MAR-24 8U4R 0 JRNL AUTH K.SAOTOME,L.L.MCGOLDRICK,J.HO,T.RAMLALL,S.SHAH,M.J.MOORE, JRNL AUTH 2 J.H.KIM,R.LEIDICH,W.C.OLSON,M.C.FRANKLIN JRNL TITL STRUCTURAL INSIGHTS INTO CXCR4 MODULATION AND JRNL TITL 2 OLIGOMERIZATION JRNL REF BIORXIV 2024 JRNL REFN ISSN 2692-8205 JRNL DOI 10.1101/2024.02.09.579708 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : NULL REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.100 REMARK 3 NUMBER OF PARTICLES : 102810 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 8U4R COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-SEP-23. REMARK 100 THE DEPOSITION ID IS D_1000277336. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : REGN7663 FAB-BOUND CXCR4 REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.50 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : TFS KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 BIOQUANTUM (6K X REMARK 245 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1200.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2200.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 4000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H, R REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS L 112 REMARK 465 ARG L 113 REMARK 465 THR L 114 REMARK 465 VAL L 115 REMARK 465 ALA L 116 REMARK 465 ALA L 117 REMARK 465 PRO L 118 REMARK 465 SER L 119 REMARK 465 VAL L 120 REMARK 465 PHE L 121 REMARK 465 ILE L 122 REMARK 465 PHE L 123 REMARK 465 PRO L 124 REMARK 465 PRO L 125 REMARK 465 SER L 126 REMARK 465 ASP L 127 REMARK 465 GLU L 128 REMARK 465 GLN L 129 REMARK 465 LEU L 130 REMARK 465 LYS L 131 REMARK 465 SER L 132 REMARK 465 GLY L 133 REMARK 465 THR L 134 REMARK 465 ALA L 135 REMARK 465 SER L 136 REMARK 465 VAL L 137 REMARK 465 VAL L 138 REMARK 465 CYS L 139 REMARK 465 LEU L 140 REMARK 465 LEU L 141 REMARK 465 ASN L 142 REMARK 465 ASN L 143 REMARK 465 PHE L 144 REMARK 465 TYR L 145 REMARK 465 PRO L 146 REMARK 465 ARG L 147 REMARK 465 GLU L 148 REMARK 465 ALA L 149 REMARK 465 LYS L 150 REMARK 465 VAL L 151 REMARK 465 GLN L 152 REMARK 465 TRP L 153 REMARK 465 LYS L 154 REMARK 465 VAL L 155 REMARK 465 ASP L 156 REMARK 465 ASN L 157 REMARK 465 ALA L 158 REMARK 465 LEU L 159 REMARK 465 GLN L 160 REMARK 465 SER L 161 REMARK 465 GLY L 162 REMARK 465 ASN L 163 REMARK 465 SER L 164 REMARK 465 GLN L 165 REMARK 465 GLU L 166 REMARK 465 SER L 167 REMARK 465 VAL L 168 REMARK 465 THR L 169 REMARK 465 GLU L 170 REMARK 465 GLN L 171 REMARK 465 ASP L 172 REMARK 465 SER L 173 REMARK 465 LYS L 174 REMARK 465 ASP L 175 REMARK 465 SER L 176 REMARK 465 THR L 177 REMARK 465 TYR L 178 REMARK 465 SER L 179 REMARK 465 LEU L 180 REMARK 465 SER L 181 REMARK 465 SER L 182 REMARK 465 THR L 183 REMARK 465 LEU L 184 REMARK 465 THR L 185 REMARK 465 LEU L 186 REMARK 465 SER L 187 REMARK 465 LYS L 188 REMARK 465 ALA L 189 REMARK 465 ASP L 190 REMARK 465 TYR L 191 REMARK 465 GLU L 192 REMARK 465 LYS L 193 REMARK 465 HIS L 194 REMARK 465 LYS L 195 REMARK 465 VAL L 196 REMARK 465 TYR L 197 REMARK 465 ALA L 198 REMARK 465 CYS L 199 REMARK 465 GLU L 200 REMARK 465 VAL L 201 REMARK 465 THR L 202 REMARK 465 HIS L 203 REMARK 465 GLN L 204 REMARK 465 GLY L 205 REMARK 465 LEU L 206 REMARK 465 SER L 207 REMARK 465 SER L 208 REMARK 465 PRO L 209 REMARK 465 VAL L 210 REMARK 465 THR L 211 REMARK 465 LYS L 212 REMARK 465 SER L 213 REMARK 465 PHE L 214 REMARK 465 ASN L 215 REMARK 465 ARG L 216 REMARK 465 GLY L 217 REMARK 465 GLU L 218 REMARK 465 CYS L 219 REMARK 465 SER H 126 REMARK 465 ALA H 127 REMARK 465 SER H 128 REMARK 465 THR H 129 REMARK 465 LYS H 130 REMARK 465 GLY H 131 REMARK 465 PRO H 132 REMARK 465 SER H 133 REMARK 465 VAL H 134 REMARK 465 PHE H 135 REMARK 465 PRO H 136 REMARK 465 LEU H 137 REMARK 465 ALA H 138 REMARK 465 PRO H 139 REMARK 465 CYS H 140 REMARK 465 SER H 141 REMARK 465 ARG H 142 REMARK 465 SER H 143 REMARK 465 THR H 144 REMARK 465 SER H 145 REMARK 465 GLU H 146 REMARK 465 SER H 147 REMARK 465 THR H 148 REMARK 465 ALA H 149 REMARK 465 ALA H 150 REMARK 465 LEU H 151 REMARK 465 GLY H 152 REMARK 465 CYS H 153 REMARK 465 LEU H 154 REMARK 465 VAL H 155 REMARK 465 LYS H 156 REMARK 465 ASP H 157 REMARK 465 TYR H 158 REMARK 465 PHE H 159 REMARK 465 PRO H 160 REMARK 465 GLU H 161 REMARK 465 PRO H 162 REMARK 465 VAL H 163 REMARK 465 THR H 164 REMARK 465 VAL H 165 REMARK 465 SER H 166 REMARK 465 TRP H 167 REMARK 465 ASN H 168 REMARK 465 SER H 169 REMARK 465 GLY H 170 REMARK 465 ALA H 171 REMARK 465 LEU H 172 REMARK 465 THR H 173 REMARK 465 SER H 174 REMARK 465 GLY H 175 REMARK 465 VAL H 176 REMARK 465 HIS H 177 REMARK 465 THR H 178 REMARK 465 PHE H 179 REMARK 465 PRO H 180 REMARK 465 ALA H 181 REMARK 465 VAL H 182 REMARK 465 LEU H 183 REMARK 465 GLN H 184 REMARK 465 SER H 185 REMARK 465 SER H 186 REMARK 465 GLY H 187 REMARK 465 LEU H 188 REMARK 465 TYR H 189 REMARK 465 SER H 190 REMARK 465 LEU H 191 REMARK 465 SER H 192 REMARK 465 SER H 193 REMARK 465 VAL H 194 REMARK 465 VAL H 195 REMARK 465 THR H 196 REMARK 465 VAL H 197 REMARK 465 PRO H 198 REMARK 465 SER H 199 REMARK 465 SER H 200 REMARK 465 SER H 201 REMARK 465 LEU H 202 REMARK 465 GLY H 203 REMARK 465 THR H 204 REMARK 465 LYS H 205 REMARK 465 THR H 206 REMARK 465 TYR H 207 REMARK 465 THR H 208 REMARK 465 CYS H 209 REMARK 465 ASN H 210 REMARK 465 VAL H 211 REMARK 465 ASP H 212 REMARK 465 HIS H 213 REMARK 465 LYS H 214 REMARK 465 PRO H 215 REMARK 465 SER H 216 REMARK 465 ASN H 217 REMARK 465 THR H 218 REMARK 465 LYS H 219 REMARK 465 VAL H 220 REMARK 465 ASP H 221 REMARK 465 LYS H 222 REMARK 465 ARG H 223 REMARK 465 VAL H 224 REMARK 465 GLU H 225 REMARK 465 SER H 226 REMARK 465 LYS H 227 REMARK 465 TYR H 228 REMARK 465 GLY H 229 REMARK 465 PRO H 230 REMARK 465 PRO H 231 REMARK 465 CYS H 232 REMARK 465 PRO H 233 REMARK 465 PRO H 234 REMARK 465 CYS H 235 REMARK 465 PRO H 236 REMARK 465 ALA H 237 REMARK 465 PRO H 238 REMARK 465 PRO H 239 REMARK 465 VAL H 240 REMARK 465 MET R -17 REMARK 465 LYS R -16 REMARK 465 THR R -15 REMARK 465 ILE R -14 REMARK 465 ILE R -13 REMARK 465 ALA R -12 REMARK 465 LEU R -11 REMARK 465 SER R -10 REMARK 465 TYR R -9 REMARK 465 ILE R -8 REMARK 465 PHE R -7 REMARK 465 CYS R -6 REMARK 465 LEU R -5 REMARK 465 VAL R -4 REMARK 465 PHE R -3 REMARK 465 ALA R -2 REMARK 465 GLY R -1 REMARK 465 ALA R 0 REMARK 465 PRO R 1 REMARK 465 GLU R 2 REMARK 465 GLY R 3 REMARK 465 ILE R 4 REMARK 465 SER R 5 REMARK 465 ILE R 6 REMARK 465 TYR R 7 REMARK 465 THR R 8 REMARK 465 SER R 9 REMARK 465 ASP R 10 REMARK 465 ASN R 11 REMARK 465 TYR R 12 REMARK 465 THR R 13 REMARK 465 GLU R 14 REMARK 465 GLU R 15 REMARK 465 MET R 16 REMARK 465 GLY R 17 REMARK 465 SER R 18 REMARK 465 GLY R 19 REMARK 465 ASP R 20 REMARK 465 TYR R 21 REMARK 465 ASP R 22 REMARK 465 SER R 23 REMARK 465 LYS R 67 REMARK 465 LYS R 68 REMARK 465 LEU R 69 REMARK 465 LYS R 230 REMARK 465 GLY R 231 REMARK 465 HIS R 232 REMARK 465 GLN R 233 REMARK 465 LYS R 308 REMARK 465 PHE R 309 REMARK 465 LYS R 310 REMARK 465 THR R 311 REMARK 465 SER R 312 REMARK 465 ALA R 313 REMARK 465 GLN R 314 REMARK 465 HIS R 315 REMARK 465 ALA R 316 REMARK 465 LEU R 317 REMARK 465 THR R 318 REMARK 465 SER R 319 REMARK 465 VAL R 320 REMARK 465 SER R 321 REMARK 465 ARG R 322 REMARK 465 GLY R 323 REMARK 465 SER R 324 REMARK 465 SER R 325 REMARK 465 LEU R 326 REMARK 465 LYS R 327 REMARK 465 ILE R 328 REMARK 465 LEU R 329 REMARK 465 SER R 330 REMARK 465 LYS R 331 REMARK 465 GLY R 332 REMARK 465 LYS R 333 REMARK 465 ARG R 334 REMARK 465 GLY R 335 REMARK 465 GLY R 336 REMARK 465 HIS R 337 REMARK 465 SER R 338 REMARK 465 SER R 339 REMARK 465 VAL R 340 REMARK 465 SER R 341 REMARK 465 THR R 342 REMARK 465 GLU R 343 REMARK 465 SER R 344 REMARK 465 GLU R 345 REMARK 465 SER R 346 REMARK 465 SER R 347 REMARK 465 SER R 348 REMARK 465 PHE R 349 REMARK 465 HIS R 350 REMARK 465 SER R 351 REMARK 465 SER R 352 REMARK 465 GLY R 353 REMARK 465 ARG R 354 REMARK 465 PRO R 355 REMARK 465 LEU R 356 REMARK 465 GLU R 357 REMARK 465 VAL R 358 REMARK 465 LEU R 359 REMARK 465 PHE R 360 REMARK 465 GLN R 361 REMARK 465 GLY R 362 REMARK 465 PRO R 363 REMARK 465 GLY R 364 REMARK 465 GLY R 365 REMARK 465 GLY R 366 REMARK 465 GLY R 367 REMARK 465 SER R 368 REMARK 465 VAL R 369 REMARK 465 SER R 370 REMARK 465 LYS R 371 REMARK 465 GLY R 372 REMARK 465 GLU R 373 REMARK 465 GLU R 374 REMARK 465 LEU R 375 REMARK 465 PHE R 376 REMARK 465 THR R 377 REMARK 465 GLY R 378 REMARK 465 VAL R 379 REMARK 465 VAL R 380 REMARK 465 PRO R 381 REMARK 465 ILE R 382 REMARK 465 LEU R 383 REMARK 465 VAL R 384 REMARK 465 GLU R 385 REMARK 465 LEU R 386 REMARK 465 ASP R 387 REMARK 465 GLY R 388 REMARK 465 ASP R 389 REMARK 465 VAL R 390 REMARK 465 ASN R 391 REMARK 465 GLY R 392 REMARK 465 HIS R 393 REMARK 465 LYS R 394 REMARK 465 PHE R 395 REMARK 465 SER R 396 REMARK 465 VAL R 397 REMARK 465 SER R 398 REMARK 465 GLY R 399 REMARK 465 GLU R 400 REMARK 465 GLY R 401 REMARK 465 GLU R 402 REMARK 465 GLY R 403 REMARK 465 ASP R 404 REMARK 465 ALA R 405 REMARK 465 THR R 406 REMARK 465 TYR R 407 REMARK 465 GLY R 408 REMARK 465 LYS R 409 REMARK 465 LEU R 410 REMARK 465 THR R 411 REMARK 465 LEU R 412 REMARK 465 LYS R 413 REMARK 465 PHE R 414 REMARK 465 ILE R 415 REMARK 465 CYS R 416 REMARK 465 THR R 417 REMARK 465 THR R 418 REMARK 465 GLY R 419 REMARK 465 LYS R 420 REMARK 465 LEU R 421 REMARK 465 PRO R 422 REMARK 465 VAL R 423 REMARK 465 PRO R 424 REMARK 465 TRP R 425 REMARK 465 PRO R 426 REMARK 465 THR R 427 REMARK 465 LEU R 428 REMARK 465 VAL R 429 REMARK 465 THR R 430 REMARK 465 THR R 431 REMARK 465 LEU R 432 REMARK 465 THR R 433 REMARK 465 TYR R 434 REMARK 465 GLY R 435 REMARK 465 VAL R 436 REMARK 465 GLN R 437 REMARK 465 CYS R 438 REMARK 465 PHE R 439 REMARK 465 SER R 440 REMARK 465 ARG R 441 REMARK 465 TYR R 442 REMARK 465 PRO R 443 REMARK 465 ASP R 444 REMARK 465 HIS R 445 REMARK 465 MET R 446 REMARK 465 LYS R 447 REMARK 465 GLN R 448 REMARK 465 HIS R 449 REMARK 465 ASP R 450 REMARK 465 PHE R 451 REMARK 465 PHE R 452 REMARK 465 LYS R 453 REMARK 465 SER R 454 REMARK 465 ALA R 455 REMARK 465 MET R 456 REMARK 465 PRO R 457 REMARK 465 GLU R 458 REMARK 465 GLY R 459 REMARK 465 TYR R 460 REMARK 465 VAL R 461 REMARK 465 GLN R 462 REMARK 465 GLU R 463 REMARK 465 ARG R 464 REMARK 465 THR R 465 REMARK 465 ILE R 466 REMARK 465 PHE R 467 REMARK 465 PHE R 468 REMARK 465 LYS R 469 REMARK 465 ASP R 470 REMARK 465 ASP R 471 REMARK 465 GLY R 472 REMARK 465 ASN R 473 REMARK 465 TYR R 474 REMARK 465 LYS R 475 REMARK 465 THR R 476 REMARK 465 ARG R 477 REMARK 465 ALA R 478 REMARK 465 GLU R 479 REMARK 465 VAL R 480 REMARK 465 LYS R 481 REMARK 465 PHE R 482 REMARK 465 GLU R 483 REMARK 465 GLY R 484 REMARK 465 ASP R 485 REMARK 465 THR R 486 REMARK 465 LEU R 487 REMARK 465 VAL R 488 REMARK 465 ASN R 489 REMARK 465 ARG R 490 REMARK 465 ILE R 491 REMARK 465 GLU R 492 REMARK 465 LEU R 493 REMARK 465 LYS R 494 REMARK 465 GLY R 495 REMARK 465 ILE R 496 REMARK 465 ASP R 497 REMARK 465 PHE R 498 REMARK 465 LYS R 499 REMARK 465 GLU R 500 REMARK 465 ASP R 501 REMARK 465 GLY R 502 REMARK 465 ASN R 503 REMARK 465 ILE R 504 REMARK 465 LEU R 505 REMARK 465 GLY R 506 REMARK 465 HIS R 507 REMARK 465 LYS R 508 REMARK 465 LEU R 509 REMARK 465 GLU R 510 REMARK 465 TYR R 511 REMARK 465 ASN R 512 REMARK 465 TYR R 513 REMARK 465 ASN R 514 REMARK 465 SER R 515 REMARK 465 HIS R 516 REMARK 465 ASN R 517 REMARK 465 VAL R 518 REMARK 465 TYR R 519 REMARK 465 ILE R 520 REMARK 465 MET R 521 REMARK 465 ALA R 522 REMARK 465 ASP R 523 REMARK 465 LYS R 524 REMARK 465 GLN R 525 REMARK 465 LYS R 526 REMARK 465 ASN R 527 REMARK 465 GLY R 528 REMARK 465 ILE R 529 REMARK 465 LYS R 530 REMARK 465 VAL R 531 REMARK 465 ASN R 532 REMARK 465 PHE R 533 REMARK 465 LYS R 534 REMARK 465 ILE R 535 REMARK 465 ARG R 536 REMARK 465 HIS R 537 REMARK 465 ASN R 538 REMARK 465 ILE R 539 REMARK 465 GLU R 540 REMARK 465 ASP R 541 REMARK 465 GLY R 542 REMARK 465 SER R 543 REMARK 465 VAL R 544 REMARK 465 GLN R 545 REMARK 465 LEU R 546 REMARK 465 ALA R 547 REMARK 465 ASP R 548 REMARK 465 HIS R 549 REMARK 465 TYR R 550 REMARK 465 GLN R 551 REMARK 465 GLN R 552 REMARK 465 ASN R 553 REMARK 465 THR R 554 REMARK 465 PRO R 555 REMARK 465 ILE R 556 REMARK 465 GLY R 557 REMARK 465 ASP R 558 REMARK 465 GLY R 559 REMARK 465 PRO R 560 REMARK 465 VAL R 561 REMARK 465 LEU R 562 REMARK 465 LEU R 563 REMARK 465 PRO R 564 REMARK 465 ASP R 565 REMARK 465 ASN R 566 REMARK 465 HIS R 567 REMARK 465 TYR R 568 REMARK 465 LEU R 569 REMARK 465 SER R 570 REMARK 465 THR R 571 REMARK 465 GLN R 572 REMARK 465 SER R 573 REMARK 465 LYS R 574 REMARK 465 LEU R 575 REMARK 465 SER R 576 REMARK 465 LYS R 577 REMARK 465 ASP R 578 REMARK 465 PRO R 579 REMARK 465 ASN R 580 REMARK 465 GLU R 581 REMARK 465 LYS R 582 REMARK 465 ARG R 583 REMARK 465 ASP R 584 REMARK 465 HIS R 585 REMARK 465 MET R 586 REMARK 465 VAL R 587 REMARK 465 LEU R 588 REMARK 465 LEU R 589 REMARK 465 GLU R 590 REMARK 465 PHE R 591 REMARK 465 VAL R 592 REMARK 465 THR R 593 REMARK 465 ALA R 594 REMARK 465 ALA R 595 REMARK 465 GLY R 596 REMARK 465 ILE R 597 REMARK 465 THR R 598 REMARK 465 LEU R 599 REMARK 465 GLY R 600 REMARK 465 MET R 601 REMARK 465 ASP R 602 REMARK 465 GLU R 603 REMARK 465 LEU R 604 REMARK 465 TYR R 605 REMARK 465 LYS R 606 REMARK 465 ASP R 607 REMARK 465 TYR R 608 REMARK 465 LYS R 609 REMARK 465 ASP R 610 REMARK 465 ASP R 611 REMARK 465 ASP R 612 REMARK 465 ASP R 613 REMARK 465 LYS R 614 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1 THR R 117 OD2 ASP R 171 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU L 29 53.14 -90.79 REMARK 500 LEU L 52 -55.49 -124.52 REMARK 500 VAL L 56 -56.13 73.63 REMARK 500 THR L 97 -35.86 -130.43 REMARK 500 ALA H 92 -169.68 -162.55 REMARK 500 ALA R 100 -64.02 -103.70 REMARK 500 HIS R 140 -64.39 -92.80 REMARK 500 ALA R 141 -2.36 62.99 REMARK 500 ASP R 181 -114.96 58.78 REMARK 500 ASP R 193 12.39 -66.27 REMARK 500 PHE R 292 4.12 -68.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-41892 RELATED DB: EMDB REMARK 900 RELATED ID: EMD-41888 RELATED DB: EMDB REMARK 900 RELATED ID: EMD-41889 RELATED DB: EMDB REMARK 900 RELATED ID: EMD-41890 RELATED DB: EMDB REMARK 900 RELATED ID: EMD-41891 RELATED DB: EMDB REMARK 900 RELATED ID: EMD-41893 RELATED DB: EMDB REMARK 900 RELATED ID: EMD-41894 RELATED DB: EMDB DBREF 8U4R L 1 219 PDB 8U4R 8U4R 1 219 DBREF 8U4R H 1 240 PDB 8U4R 8U4R 1 240 DBREF 8U4R R 2 352 UNP P61073 CXCR4_HUMAN 2 352 DBREF 8U4R R 353 614 PDB 8U4R 8U4R 353 614 SEQADV 8U4R MET R -17 UNP P61073 INITIATING METHIONINE SEQADV 8U4R LYS R -16 UNP P61073 EXPRESSION TAG SEQADV 8U4R THR R -15 UNP P61073 EXPRESSION TAG SEQADV 8U4R ILE R -14 UNP P61073 EXPRESSION TAG SEQADV 8U4R ILE R -13 UNP P61073 EXPRESSION TAG SEQADV 8U4R ALA R -12 UNP P61073 EXPRESSION TAG SEQADV 8U4R LEU R -11 UNP P61073 EXPRESSION TAG SEQADV 8U4R SER R -10 UNP P61073 EXPRESSION TAG SEQADV 8U4R TYR R -9 UNP P61073 EXPRESSION TAG SEQADV 8U4R ILE R -8 UNP P61073 EXPRESSION TAG SEQADV 8U4R PHE R -7 UNP P61073 EXPRESSION TAG SEQADV 8U4R CYS R -6 UNP P61073 EXPRESSION TAG SEQADV 8U4R LEU R -5 UNP P61073 EXPRESSION TAG SEQADV 8U4R VAL R -4 UNP P61073 EXPRESSION TAG SEQADV 8U4R PHE R -3 UNP P61073 EXPRESSION TAG SEQADV 8U4R ALA R -2 UNP P61073 EXPRESSION TAG SEQADV 8U4R GLY R -1 UNP P61073 EXPRESSION TAG SEQADV 8U4R ALA R 0 UNP P61073 EXPRESSION TAG SEQADV 8U4R PRO R 1 UNP P61073 EXPRESSION TAG SEQADV 8U4R SER R 119 UNP P61073 ASN 119 CONFLICT SEQRES 1 L 219 ASP VAL VAL MET THR GLN SER PRO LEU SER LEU PRO VAL SEQRES 2 L 219 THR LEU GLY GLN PRO ALA SER ILE SER CYS ARG SER SER SEQRES 3 L 219 GLN SER LEU VAL TYR THR ASP GLY ASN THR TYR LEU ASN SEQRES 4 L 219 TRP PHE GLN GLN ARG PRO GLY GLN SER PRO ARG ARG LEU SEQRES 5 L 219 ILE TYR LYS VAL SER ASN ARG ASP SER GLY VAL PRO ASP SEQRES 6 L 219 ARG PHE SER GLY SER GLY SER GLY THR ASP PHE THR LEU SEQRES 7 L 219 LYS ILE SER ARG VAL GLU ALA GLU ASP VAL GLY PHE TYR SEQRES 8 L 219 TYR CYS MET GLN ASN THR HIS TRP PRO LEU THR PHE GLY SEQRES 9 L 219 GLY GLY THR LYS VAL GLU ILE LYS ARG THR VAL ALA ALA SEQRES 10 L 219 PRO SER VAL PHE ILE PHE PRO PRO SER ASP GLU GLN LEU SEQRES 11 L 219 LYS SER GLY THR ALA SER VAL VAL CYS LEU LEU ASN ASN SEQRES 12 L 219 PHE TYR PRO ARG GLU ALA LYS VAL GLN TRP LYS VAL ASP SEQRES 13 L 219 ASN ALA LEU GLN SER GLY ASN SER GLN GLU SER VAL THR SEQRES 14 L 219 GLU GLN ASP SER LYS ASP SER THR TYR SER LEU SER SER SEQRES 15 L 219 THR LEU THR LEU SER LYS ALA ASP TYR GLU LYS HIS LYS SEQRES 16 L 219 VAL TYR ALA CYS GLU VAL THR HIS GLN GLY LEU SER SER SEQRES 17 L 219 PRO VAL THR LYS SER PHE ASN ARG GLY GLU CYS SEQRES 1 H 240 GLN VAL GLN LEU VAL GLN SER GLY ALA GLU VAL LYS LYS SEQRES 2 H 240 PRO GLY ALA SER VAL LYS VAL SER CYS LYS ALA SER GLY SEQRES 3 H 240 TYR THR PHE THR SER TYR GLY ILE SER TRP VAL ARG GLN SEQRES 4 H 240 ALA PRO GLY GLN GLY ILE GLU TRP MET GLY TRP ILE SER SEQRES 5 H 240 THR TYR ASN GLY ASN ARG ASN TYR ALA GLN LYS VAL GLN SEQRES 6 H 240 GLY ARG VAL THR MET THR THR ASP ARG SER THR SER THR SEQRES 7 H 240 ALA TYR MET ASP LEU ARG SER LEU ARG SER ASP ASP THR SEQRES 8 H 240 ALA VAL TYR TYR CYS ALA ARG HIS GLY ILE THR GLY ALA SEQRES 9 H 240 ARG ASN TYR TYR TYR HIS TYR GLY MET ASP VAL TRP GLY SEQRES 10 H 240 GLN GLY THR THR VAL THR VAL SER SER ALA SER THR LYS SEQRES 11 H 240 GLY PRO SER VAL PHE PRO LEU ALA PRO CYS SER ARG SER SEQRES 12 H 240 THR SER GLU SER THR ALA ALA LEU GLY CYS LEU VAL LYS SEQRES 13 H 240 ASP TYR PHE PRO GLU PRO VAL THR VAL SER TRP ASN SER SEQRES 14 H 240 GLY ALA LEU THR SER GLY VAL HIS THR PHE PRO ALA VAL SEQRES 15 H 240 LEU GLN SER SER GLY LEU TYR SER LEU SER SER VAL VAL SEQRES 16 H 240 THR VAL PRO SER SER SER LEU GLY THR LYS THR TYR THR SEQRES 17 H 240 CYS ASN VAL ASP HIS LYS PRO SER ASN THR LYS VAL ASP SEQRES 18 H 240 LYS ARG VAL GLU SER LYS TYR GLY PRO PRO CYS PRO PRO SEQRES 19 H 240 CYS PRO ALA PRO PRO VAL SEQRES 1 R 632 MET LYS THR ILE ILE ALA LEU SER TYR ILE PHE CYS LEU SEQRES 2 R 632 VAL PHE ALA GLY ALA PRO GLU GLY ILE SER ILE TYR THR SEQRES 3 R 632 SER ASP ASN TYR THR GLU GLU MET GLY SER GLY ASP TYR SEQRES 4 R 632 ASP SER MET LYS GLU PRO CYS PHE ARG GLU GLU ASN ALA SEQRES 5 R 632 ASN PHE ASN LYS ILE PHE LEU PRO THR ILE TYR SER ILE SEQRES 6 R 632 ILE PHE LEU THR GLY ILE VAL GLY ASN GLY LEU VAL ILE SEQRES 7 R 632 LEU VAL MET GLY TYR GLN LYS LYS LEU ARG SER MET THR SEQRES 8 R 632 ASP LYS TYR ARG LEU HIS LEU SER VAL ALA ASP LEU LEU SEQRES 9 R 632 PHE VAL ILE THR LEU PRO PHE TRP ALA VAL ASP ALA VAL SEQRES 10 R 632 ALA ASN TRP TYR PHE GLY ASN PHE LEU CYS LYS ALA VAL SEQRES 11 R 632 HIS VAL ILE TYR THR VAL SER LEU TYR SER SER VAL LEU SEQRES 12 R 632 ILE LEU ALA PHE ILE SER LEU ASP ARG TYR LEU ALA ILE SEQRES 13 R 632 VAL HIS ALA THR ASN SER GLN ARG PRO ARG LYS LEU LEU SEQRES 14 R 632 ALA GLU LYS VAL VAL TYR VAL GLY VAL TRP ILE PRO ALA SEQRES 15 R 632 LEU LEU LEU THR ILE PRO ASP PHE ILE PHE ALA ASN VAL SEQRES 16 R 632 SER GLU ALA ASP ASP ARG TYR ILE CYS ASP ARG PHE TYR SEQRES 17 R 632 PRO ASN ASP LEU TRP VAL VAL VAL PHE GLN PHE GLN HIS SEQRES 18 R 632 ILE MET VAL GLY LEU ILE LEU PRO GLY ILE VAL ILE LEU SEQRES 19 R 632 SER CYS TYR CYS ILE ILE ILE SER LYS LEU SER HIS SER SEQRES 20 R 632 LYS GLY HIS GLN LYS ARG LYS ALA LEU LYS THR THR VAL SEQRES 21 R 632 ILE LEU ILE LEU ALA PHE PHE ALA CYS TRP LEU PRO TYR SEQRES 22 R 632 TYR ILE GLY ILE SER ILE ASP SER PHE ILE LEU LEU GLU SEQRES 23 R 632 ILE ILE LYS GLN GLY CYS GLU PHE GLU ASN THR VAL HIS SEQRES 24 R 632 LYS TRP ILE SER ILE THR GLU ALA LEU ALA PHE PHE HIS SEQRES 25 R 632 CYS CYS LEU ASN PRO ILE LEU TYR ALA PHE LEU GLY ALA SEQRES 26 R 632 LYS PHE LYS THR SER ALA GLN HIS ALA LEU THR SER VAL SEQRES 27 R 632 SER ARG GLY SER SER LEU LYS ILE LEU SER LYS GLY LYS SEQRES 28 R 632 ARG GLY GLY HIS SER SER VAL SER THR GLU SER GLU SER SEQRES 29 R 632 SER SER PHE HIS SER SER GLY ARG PRO LEU GLU VAL LEU SEQRES 30 R 632 PHE GLN GLY PRO GLY GLY GLY GLY SER VAL SER LYS GLY SEQRES 31 R 632 GLU GLU LEU PHE THR GLY VAL VAL PRO ILE LEU VAL GLU SEQRES 32 R 632 LEU ASP GLY ASP VAL ASN GLY HIS LYS PHE SER VAL SER SEQRES 33 R 632 GLY GLU GLY GLU GLY ASP ALA THR TYR GLY LYS LEU THR SEQRES 34 R 632 LEU LYS PHE ILE CYS THR THR GLY LYS LEU PRO VAL PRO SEQRES 35 R 632 TRP PRO THR LEU VAL THR THR LEU THR TYR GLY VAL GLN SEQRES 36 R 632 CYS PHE SER ARG TYR PRO ASP HIS MET LYS GLN HIS ASP SEQRES 37 R 632 PHE PHE LYS SER ALA MET PRO GLU GLY TYR VAL GLN GLU SEQRES 38 R 632 ARG THR ILE PHE PHE LYS ASP ASP GLY ASN TYR LYS THR SEQRES 39 R 632 ARG ALA GLU VAL LYS PHE GLU GLY ASP THR LEU VAL ASN SEQRES 40 R 632 ARG ILE GLU LEU LYS GLY ILE ASP PHE LYS GLU ASP GLY SEQRES 41 R 632 ASN ILE LEU GLY HIS LYS LEU GLU TYR ASN TYR ASN SER SEQRES 42 R 632 HIS ASN VAL TYR ILE MET ALA ASP LYS GLN LYS ASN GLY SEQRES 43 R 632 ILE LYS VAL ASN PHE LYS ILE ARG HIS ASN ILE GLU ASP SEQRES 44 R 632 GLY SER VAL GLN LEU ALA ASP HIS TYR GLN GLN ASN THR SEQRES 45 R 632 PRO ILE GLY ASP GLY PRO VAL LEU LEU PRO ASP ASN HIS SEQRES 46 R 632 TYR LEU SER THR GLN SER LYS LEU SER LYS ASP PRO ASN SEQRES 47 R 632 GLU LYS ARG ASP HIS MET VAL LEU LEU GLU PHE VAL THR SEQRES 48 R 632 ALA ALA GLY ILE THR LEU GLY MET ASP GLU LEU TYR LYS SEQRES 49 R 632 ASP TYR LYS ASP ASP ASP ASP LYS HET CLR R 701 28 HETNAM CLR CHOLESTEROL FORMUL 4 CLR C27 H46 O HELIX 1 AA1 THR H 28 THR H 30 5 3 HELIX 2 AA2 ARG H 87 THR H 91 5 5 HELIX 3 AA3 PHE R 36 TYR R 65 1 30 HELIX 4 AA4 SER R 71 ALA R 100 1 30 HELIX 5 AA5 ASN R 106 HIS R 140 1 35 HELIX 6 AA6 SER R 144 VAL R 160 1 17 HELIX 7 AA7 VAL R 160 LEU R 167 1 8 HELIX 8 AA8 THR R 168 PHE R 174 1 7 HELIX 9 AA9 ASN R 192 ILE R 209 1 18 HELIX 10 AB1 ILE R 209 LEU R 226 1 18 HELIX 11 AB2 ARG R 235 TRP R 252 1 18 HELIX 12 AB3 TRP R 252 LEU R 267 1 16 HELIX 13 AB4 CYS R 274 PHE R 292 1 19 HELIX 14 AB5 PHE R 293 CYS R 295 5 3 HELIX 15 AB6 CYS R 296 PHE R 304 1 9 SHEET 1 AA1 4 MET L 4 SER L 7 0 SHEET 2 AA1 4 ALA L 19 SER L 25 -1 O ARG L 24 N THR L 5 SHEET 3 AA1 4 PHE L 76 ILE L 80 -1 O PHE L 76 N CYS L 23 SHEET 4 AA1 4 PHE L 67 GLY L 71 -1 N SER L 68 O LYS L 79 SHEET 1 AA2 6 SER L 10 PRO L 12 0 SHEET 2 AA2 6 THR L 107 GLU L 110 1 O LYS L 108 N LEU L 11 SHEET 3 AA2 6 GLY L 89 GLN L 95 -1 N GLY L 89 O VAL L 109 SHEET 4 AA2 6 LEU L 38 GLN L 43 -1 N ASN L 39 O MET L 94 SHEET 5 AA2 6 ARG L 50 TYR L 54 -1 O ARG L 50 N GLN L 42 SHEET 6 AA2 6 ASN L 58 ARG L 59 -1 O ASN L 58 N TYR L 54 SHEET 1 AA3 4 SER L 10 PRO L 12 0 SHEET 2 AA3 4 THR L 107 GLU L 110 1 O LYS L 108 N LEU L 11 SHEET 3 AA3 4 GLY L 89 GLN L 95 -1 N GLY L 89 O VAL L 109 SHEET 4 AA3 4 THR L 102 PHE L 103 -1 O THR L 102 N GLN L 95 SHEET 1 AA4 4 GLN H 3 GLN H 6 0 SHEET 2 AA4 4 VAL H 18 SER H 25 -1 O LYS H 23 N VAL H 5 SHEET 3 AA4 4 THR H 78 LEU H 83 -1 O LEU H 83 N VAL H 18 SHEET 4 AA4 4 VAL H 68 ASP H 73 -1 N THR H 69 O ASP H 82 SHEET 1 AA5 6 GLU H 10 LYS H 12 0 SHEET 2 AA5 6 THR H 120 VAL H 124 1 O THR H 123 N LYS H 12 SHEET 3 AA5 6 ALA H 92 THR H 102 -1 N TYR H 94 O THR H 120 SHEET 4 AA5 6 TYR H 32 GLN H 39 -1 N SER H 35 O ALA H 97 SHEET 5 AA5 6 ILE H 45 SER H 52 -1 O GLU H 46 N ARG H 38 SHEET 6 AA5 6 ARG H 58 TYR H 60 -1 O ASN H 59 N TRP H 50 SHEET 1 AA6 4 GLU H 10 LYS H 12 0 SHEET 2 AA6 4 THR H 120 VAL H 124 1 O THR H 123 N LYS H 12 SHEET 3 AA6 4 ALA H 92 THR H 102 -1 N TYR H 94 O THR H 120 SHEET 4 AA6 4 TYR H 107 TRP H 116 -1 O MET H 113 N ARG H 98 SHEET 1 AA7 2 ALA R 175 ALA R 180 0 SHEET 2 AA7 2 ARG R 183 ARG R 188 -1 O ARG R 183 N ALA R 180 SSBOND 1 CYS L 23 CYS L 93 1555 1555 2.04 SSBOND 2 CYS H 22 CYS H 96 1555 1555 2.03 SSBOND 3 CYS R 28 CYS R 274 1555 1555 2.03 SSBOND 4 CYS R 109 CYS R 186 1555 1555 2.03 CISPEP 1 SER L 7 PRO L 8 0 -5.07 CISPEP 2 TRP L 99 PRO L 100 0 -0.62 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000