HEADER RNA 12-SEP-23 8U5R TITLE STRUCTURE OF MANGO II VARIANT APTAMER BOUND TO T01-6A COMPND MOL_ID: 1; COMPND 2 MOLECULE: MANGO II VARIANT; COMPND 3 CHAIN: A, B, C; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630 KEYWDS RNA, APTAMER, FLUORESCENCE, TURN-ON, FLUOROGENIC, FLUOROPHORE, G- KEYWDS 2 QUARTET, G-QUADRUPLEX EXPDTA X-RAY DIFFRACTION AUTHOR L.F.M.PASSALACQUA,A.R.FERRE-D'AMARE REVDAT 2 08-OCT-25 8U5R 1 JRNL REVDAT 1 27-MAR-24 8U5R 0 JRNL AUTH X.LU,L.F.M.PASSALACQUA,M.NODWELL,K.Y.S.KONG, JRNL AUTH 2 G.CABALLERO-GARCIA,E.V.DOLGOSHEINA,A.R.FERRE-D'AMARE, JRNL AUTH 3 R.BRITTON,P.J.UNRAU JRNL TITL SYMMETRY BREAKING OF FLUOROPHORE BINDING TO A G-QUADRUPLEX JRNL TITL 2 GENERATES AN RNA APTAMER WITH PICOMOLAR KD. JRNL REF NUCLEIC ACIDS RES. V. 52 8039 2024 JRNL REFN ESSN 1362-4962 JRNL PMID 38945550 JRNL DOI 10.1093/NAR/GKAE493 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.80 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 11401 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1140 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.8000 - 5.2000 1.00 1378 153 0.1816 0.2131 REMARK 3 2 5.2000 - 4.1300 1.00 1296 144 0.1744 0.2034 REMARK 3 3 4.1200 - 3.6000 1.00 1289 143 0.1835 0.2418 REMARK 3 4 3.6000 - 3.2700 1.00 1269 142 0.1742 0.2159 REMARK 3 5 3.2700 - 3.0400 1.00 1249 139 0.1938 0.2264 REMARK 3 6 3.0400 - 2.8600 1.00 1271 141 0.2789 0.3691 REMARK 3 7 2.8600 - 2.7200 1.00 1265 140 0.2961 0.3235 REMARK 3 8 2.7200 - 2.6000 0.99 1244 138 0.3110 0.3598 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.346 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.137 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 43.35 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.001 2667 REMARK 3 ANGLE : 0.364 4170 REMARK 3 CHIRALITY : 0.020 537 REMARK 3 PLANARITY : 0.002 108 REMARK 3 DIHEDRAL : 18.105 1284 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -16.3594 25.2150 -2.9381 REMARK 3 T TENSOR REMARK 3 T11: 0.2697 T22: 0.2811 REMARK 3 T33: 0.2513 T12: -0.0125 REMARK 3 T13: 0.0520 T23: 0.0106 REMARK 3 L TENSOR REMARK 3 L11: 1.0484 L22: 1.0910 REMARK 3 L33: 0.5220 L12: -0.2966 REMARK 3 L13: 0.0191 L23: -0.2630 REMARK 3 S TENSOR REMARK 3 S11: -0.0646 S12: -0.0990 S13: -0.1886 REMARK 3 S21: 0.0801 S22: 0.0033 S23: -0.0892 REMARK 3 S31: 0.1608 S32: -0.0328 S33: 0.0478 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8U5R COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-SEP-23. REMARK 100 THE DEPOSITION ID IS D_1000277390. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-DEC-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS 3.8 REMARK 200 DATA SCALING SOFTWARE : DIALS 3.8 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11414 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 45.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 12.30 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.8300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX 1.19.2_4158 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MAGNESIUM CHLORIDE HEXAHYDRATE, MOPS, REMARK 280 TACSIMATE, HEXAMINE COBALT (III) CHLORIDE, AND 1-PROPANOL, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.12400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 53.12400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 18.46450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 90.37400 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 18.46450 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 90.37400 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 53.12400 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 18.46450 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 90.37400 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 53.12400 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 18.46450 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 90.37400 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 K K A 103 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OP2 G A 20 O2' G A 25 3454 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 105 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 U A 4 O2 REMARK 620 2 C A 34 O2 73.5 REMARK 620 3 HOH A 213 O 90.6 88.4 REMARK 620 4 A B 5 O3' 72.5 51.2 38.5 REMARK 620 5 C B 6 OP1 69.2 49.7 41.0 3.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 104 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 A A 5 O3' REMARK 620 2 C A 6 OP1 48.8 REMARK 620 3 HOH A 216 O 61.3 87.7 REMARK 620 4 U B 4 O2 38.5 67.1 23.8 REMARK 620 5 C B 34 O2 43.5 72.4 18.2 5.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 102 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G A 10 O6 REMARK 620 2 G A 11 O6 79.2 REMARK 620 3 G A 15 O6 75.3 91.7 REMARK 620 4 G A 16 O6 140.4 73.4 77.4 REMARK 620 5 G A 20 O6 99.8 156.0 65.2 94.1 REMARK 620 6 G A 21 O6 149.7 113.1 129.1 69.2 79.8 REMARK 620 7 G A 25 O6 63.4 130.2 108.0 154.2 67.2 89.3 REMARK 620 8 G A 26 O6 92.5 67.1 157.4 102.3 136.7 69.5 82.2 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 103 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G A 10 O6 REMARK 620 2 G A 10 O6 0.0 REMARK 620 3 G A 15 O6 77.4 77.4 REMARK 620 4 G A 15 O6 77.4 77.4 0.0 REMARK 620 5 G A 20 O6 116.3 116.3 69.1 69.1 REMARK 620 6 G A 20 O6 116.3 116.3 69.1 69.1 0.0 REMARK 620 7 G A 25 O6 65.6 65.6 103.4 103.4 71.7 71.7 REMARK 620 8 G A 25 O6 65.6 65.6 103.4 103.4 71.7 71.7 0.0 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 106 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G A 10 OP2 REMARK 620 2 A A 30 OP1 111.0 REMARK 620 3 HOH A 207 O 162.0 51.8 REMARK 620 4 HOH A 212 O 64.9 150.8 126.3 REMARK 620 5 HOH A 221 O 68.9 98.4 105.5 52.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 101 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G A 11 O6 REMARK 620 2 G A 13 O6 97.1 REMARK 620 3 G A 16 O6 69.3 79.7 REMARK 620 4 G A 18 O6 154.1 62.0 90.8 REMARK 620 5 G A 21 O6 100.6 131.6 65.5 85.0 REMARK 620 6 G A 23 O6 132.3 109.9 151.8 72.3 90.1 REMARK 620 7 G A 26 O6 63.8 158.0 101.6 139.4 66.3 79.4 REMARK 620 8 G A 29 O6 84.0 70.8 137.1 101.4 155.4 69.8 95.3 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B 101 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G B 10 O6 REMARK 620 2 G B 11 O6 77.9 REMARK 620 3 G B 15 O6 74.7 92.1 REMARK 620 4 G B 16 O6 137.3 71.6 77.2 REMARK 620 5 G B 20 O6 103.9 152.0 62.4 90.5 REMARK 620 6 G B 21 O6 148.1 110.4 133.3 72.4 83.1 REMARK 620 7 G B 25 O6 64.9 128.3 109.9 156.9 74.7 87.9 REMARK 620 8 G B 26 O6 91.8 64.4 155.2 100.9 142.2 66.8 81.6 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B 103 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G B 10 O6 REMARK 620 2 G B 15 O6 78.0 REMARK 620 3 G B 20 O6 117.3 64.3 REMARK 620 4 G B 25 O6 67.0 104.8 76.2 REMARK 620 5 G C 10 O6 125.3 71.7 88.8 164.4 REMARK 620 6 G C 15 O6 72.0 107.8 164.0 119.7 75.3 REMARK 620 7 G C 20 O6 87.8 165.9 124.5 69.7 117.1 66.4 REMARK 620 8 G C 25 O6 165.1 116.3 69.0 103.4 66.4 105.4 77.9 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B 102 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G B 11 O6 REMARK 620 2 G B 13 O6 97.9 REMARK 620 3 G B 16 O6 67.9 83.1 REMARK 620 4 G B 18 O6 155.5 63.9 92.6 REMARK 620 5 G B 21 O6 102.2 137.0 70.3 83.8 REMARK 620 6 G B 23 O6 132.4 103.9 155.6 70.6 89.9 REMARK 620 7 G B 26 O6 62.7 154.7 102.2 139.2 66.6 81.5 REMARK 620 8 G B 29 O6 85.5 72.2 140.7 102.7 146.4 62.5 89.4 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B 104 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G B 26 O4' REMARK 620 2 HOH B 201 O 66.3 REMARK 620 3 G C 20 OP2 89.0 55.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K C 101 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G C 10 O6 REMARK 620 2 G C 11 O6 79.6 REMARK 620 3 G C 15 O6 73.8 88.5 REMARK 620 4 G C 16 O6 137.3 68.7 77.4 REMARK 620 5 G C 20 O6 102.6 149.4 63.6 91.8 REMARK 620 6 G C 21 O6 150.7 108.0 133.3 69.4 85.1 REMARK 620 7 G C 25 O6 64.5 131.3 110.1 157.3 73.8 91.5 REMARK 620 8 G C 26 O6 91.6 66.1 152.9 100.5 143.2 67.6 82.4 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K C 102 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G C 11 O6 REMARK 620 2 G C 13 O6 95.8 REMARK 620 3 G C 16 O6 66.9 83.6 REMARK 620 4 G C 18 O6 158.9 67.6 97.3 REMARK 620 5 G C 21 O6 102.1 137.9 69.4 84.0 REMARK 620 6 G C 23 O6 131.9 107.3 154.9 67.8 88.5 REMARK 620 7 G C 26 O6 62.8 153.6 100.2 136.5 65.9 80.2 REMARK 620 8 G C 29 O6 85.1 68.9 138.5 99.9 149.7 66.0 92.7 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K C 103 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 A C 24 OP2 REMARK 620 2 A C 30 O2' 86.5 REMARK 620 N 1 DBREF 8U5R A 1 36 PDB 8U5R 8U5R 1 36 DBREF 8U5R B 1 36 PDB 8U5R 8U5R 1 36 DBREF 8U5R C 1 36 PDB 8U5R 8U5R 1 36 SEQRES 1 A 36 G C G U A C G A A G G U G SEQRES 2 A 36 A G G A G A G G C G A G G SEQRES 3 A 36 A A G A G U A C G C SEQRES 1 B 36 G C G U A C G A A G G U G SEQRES 2 B 36 A G G A G A G G C G A G G SEQRES 3 B 36 A A G A G U A C G C SEQRES 1 C 36 G C G U A C G A A G G U G SEQRES 2 C 36 A G G A G A G G C G A G G SEQRES 3 C 36 A A G A G U A C G C HET K A 101 1 HET K A 102 1 HET K A 103 1 HET K A 104 1 HET K A 105 1 HET NA A 106 1 HET NA A 107 1 HET K B 101 1 HET K B 102 1 HET K B 103 1 HET K B 104 1 HET K C 101 1 HET K C 102 1 HET K C 103 1 HET NA C 104 1 HETNAM K POTASSIUM ION HETNAM NA SODIUM ION FORMUL 4 K 12(K 1+) FORMUL 9 NA 3(NA 1+) FORMUL 19 HOH *51(H2 O) LINK O2 U A 4 K K A 105 1555 1555 2.81 LINK O3' A A 5 K K A 104 1555 1555 3.03 LINK OP1 C A 6 K K A 104 1555 1555 2.99 LINK O6 G A 10 K K A 102 1555 1555 2.96 LINK O6 G A 10 K K A 103 1555 1555 2.73 LINK O6 G A 10 K K A 103 1555 3454 2.73 LINK OP2 G A 10 NA NA A 106 1555 1555 3.14 LINK O6 G A 11 K K A 101 1555 1555 3.06 LINK O6 G A 11 K K A 102 1555 1555 2.81 LINK OP2 U A 12 NA NA A 107 1555 1555 2.57 LINK O6 G A 13 K K A 101 1555 1555 2.86 LINK O6 G A 15 K K A 102 1555 1555 2.76 LINK O6 G A 15 K K A 103 1555 1555 2.85 LINK O6 G A 15 K K A 103 1555 3454 2.85 LINK O6 G A 16 K K A 101 1555 1555 2.78 LINK O6 G A 16 K K A 102 1555 1555 2.75 LINK O6 G A 18 K K A 101 1555 1555 2.95 LINK O6 G A 20 K K A 102 1555 1555 3.09 LINK O6 G A 20 K K A 103 1555 1555 2.71 LINK O6 G A 20 K K A 103 1555 3454 2.71 LINK O6 G A 21 K K A 101 1555 1555 3.06 LINK O6 G A 21 K K A 102 1555 1555 2.83 LINK O6 G A 23 K K A 101 1555 1555 2.80 LINK O6 G A 25 K K A 102 1555 1555 2.75 LINK O6 G A 25 K K A 103 1555 1555 2.82 LINK O6 G A 25 K K A 103 1555 3454 2.82 LINK O6 G A 26 K K A 101 1555 1555 2.79 LINK O6 G A 26 K K A 102 1555 1555 2.80 LINK O6 G A 29 K K A 101 1555 1555 2.93 LINK OP1 A A 30 NA NA A 106 1555 1555 2.82 LINK O2 C A 34 K K A 105 1555 1555 2.89 LINK K K A 104 O HOH A 216 1555 1555 3.10 LINK K K A 104 O2 U B 4 8455 1555 2.77 LINK K K A 104 O2 C B 34 8455 1555 2.84 LINK K K A 105 O HOH A 213 1555 1555 3.09 LINK K K A 105 O3' A B 5 8455 1555 2.80 LINK K K A 105 OP1 C B 6 8455 1555 3.04 LINK NA NA A 106 O HOH A 207 1555 1555 3.12 LINK NA NA A 106 O HOH A 212 1555 1555 2.73 LINK NA NA A 106 O HOH A 221 1555 1555 2.65 LINK O6 G B 10 K K B 101 1555 1555 2.97 LINK O6 G B 10 K K B 103 1555 1555 2.70 LINK O6 G B 11 K K B 101 1555 1555 2.86 LINK O6 G B 11 K K B 102 1555 1555 3.08 LINK O6 G B 13 K K B 102 1555 1555 2.79 LINK O6 G B 15 K K B 101 1555 1555 2.72 LINK O6 G B 15 K K B 103 1555 1555 2.78 LINK O6 G B 16 K K B 101 1555 1555 2.77 LINK O6 G B 16 K K B 102 1555 1555 2.81 LINK O6 G B 18 K K B 102 1555 1555 2.87 LINK O6 G B 20 K K B 101 1555 1555 3.03 LINK O6 G B 20 K K B 103 1555 1555 2.84 LINK O6 G B 21 K K B 101 1555 1555 2.88 LINK O6 G B 21 K K B 102 1555 1555 2.98 LINK O6 G B 23 K K B 102 1555 1555 2.88 LINK O6 G B 25 K K B 101 1555 1555 2.75 LINK O6 G B 25 K K B 103 1555 1555 2.86 LINK O6 G B 26 K K B 101 1555 1555 2.84 LINK O6 G B 26 K K B 102 1555 1555 2.74 LINK O4' G B 26 K K B 104 1555 1555 3.42 LINK O6 G B 29 K K B 102 1555 1555 3.04 LINK K K B 103 O6 G C 10 1555 1555 2.74 LINK K K B 103 O6 G C 15 1555 1555 2.83 LINK K K B 103 O6 G C 20 1555 1555 2.69 LINK K K B 103 O6 G C 25 1555 1555 2.81 LINK K K B 104 O HOH B 201 1555 1555 3.23 LINK K K B 104 OP2 G C 20 1555 1555 3.31 LINK O6 G C 7 NA NA C 104 1555 1555 2.60 LINK O6 G C 10 K K C 101 1555 1555 2.94 LINK O6 G C 11 K K C 101 1555 1555 2.89 LINK O6 G C 11 K K C 102 1555 1555 3.06 LINK O6 G C 13 K K C 102 1555 1555 2.88 LINK O6 G C 15 K K C 101 1555 1555 2.73 LINK O6 G C 16 K K C 101 1555 1555 2.79 LINK O6 G C 16 K K C 102 1555 1555 2.74 LINK O6 G C 18 K K C 102 1555 1555 3.00 LINK O6 G C 20 K K C 101 1555 1555 3.00 LINK O6 G C 21 K K C 101 1555 1555 2.80 LINK O6 G C 21 K K C 102 1555 1555 2.85 LINK O6 G C 23 K K C 102 1555 1555 2.95 LINK OP2 A C 24 K K C 103 1555 4555 2.79 LINK O6 G C 25 K K C 101 1555 1555 2.75 LINK O6 G C 26 K K C 101 1555 1555 2.71 LINK O6 G C 26 K K C 102 1555 1555 2.78 LINK O6 G C 29 K K C 102 1555 1555 2.70 LINK O2' A C 30 K K C 103 1555 1555 2.93 CRYST1 36.929 180.748 106.248 90.00 90.00 90.00 C 2 2 21 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.027079 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005533 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009412 0.00000 CONECT 78 2378 CONECT 92 2377 CONECT 107 2377 CONECT 195 2379 CONECT 210 2375 2376 CONECT 233 2374 2375 CONECT 241 2380 CONECT 276 2374 CONECT 321 2375 2376 CONECT 344 2374 2375 CONECT 389 2374 CONECT 434 2375 2376 CONECT 457 2374 2375 CONECT 500 2374 CONECT 545 2375 2376 CONECT 568 2374 2375 CONECT 635 2374 CONECT 642 2379 CONECT 742 2378 CONECT 1001 2381 2383 CONECT 1024 2381 2382 CONECT 1067 2382 CONECT 1112 2381 2383 CONECT 1135 2381 2382 CONECT 1180 2382 CONECT 1225 2381 2383 CONECT 1248 2381 2382 CONECT 1291 2382 CONECT 1336 2381 2383 CONECT 1348 2384 CONECT 1359 2381 2382 CONECT 1426 2382 CONECT 1725 2388 CONECT 1792 2383 2385 CONECT 1815 2385 2386 CONECT 1858 2386 CONECT 1903 2383 2385 CONECT 1926 2385 2386 CONECT 1971 2386 CONECT 2001 2384 CONECT 2016 2383 2385 CONECT 2039 2385 2386 CONECT 2082 2386 CONECT 2127 2383 2385 CONECT 2150 2385 2386 CONECT 2217 2386 CONECT 2233 2387 CONECT 2374 233 276 344 389 CONECT 2374 457 500 568 635 CONECT 2375 210 233 321 344 CONECT 2375 434 457 545 568 CONECT 2376 210 321 434 545 CONECT 2377 92 107 2404 CONECT 2378 78 742 2401 CONECT 2379 195 642 2395 2400 CONECT 2379 2409 CONECT 2380 241 CONECT 2381 1001 1024 1112 1135 CONECT 2381 1225 1248 1336 1359 CONECT 2382 1024 1067 1135 1180 CONECT 2382 1248 1291 1359 1426 CONECT 2383 1001 1112 1225 1336 CONECT 2383 1792 1903 2016 2127 CONECT 2384 1348 2001 2415 CONECT 2385 1792 1815 1903 1926 CONECT 2385 2016 2039 2127 2150 CONECT 2386 1815 1858 1926 1971 CONECT 2386 2039 2082 2150 2217 CONECT 2387 2233 CONECT 2388 1725 CONECT 2395 2379 CONECT 2400 2379 CONECT 2401 2378 CONECT 2404 2377 CONECT 2409 2379 CONECT 2415 2384 MASTER 420 0 15 0 0 0 0 6 2436 3 76 9 END