HEADER VIRAL PROTEIN 13-SEP-23 8U6F TITLE CRYSTAL STRUCTURE OF HIV-1 REVERSE TRANSCRIPTASE IN COMPLEX WITH N-(2- TITLE 2 (5-CHLORO-2-(3-CHLORO-5-CYANOPHENOXY)PHENOXY)ETHYL)-N- TITLE 3 METHYLACRYLAMIDE (JLJ742), A NON-NUCLEOSIDE INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: REVERSE TRANSCRIPTASE/RIBONUCLEASE H; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: P51 RT; COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES; COMPND 10 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 3 ORGANISM_TAXID: 11676; SOURCE 4 GENE: GAG-POL; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 9 ORGANISM_TAXID: 11676; SOURCE 10 GENE: GAG-POL; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS REVERSE TRANSCRIPTASE, ANTIVIRAL, DRUG DESIGN, HIV-1, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR G.PRUCHA,Z.CARTER,W.L.JORGENSEN,K.S.ANDERSON REVDAT 1 08-NOV-23 8U6F 0 JRNL AUTH G.R.PRUCHA,S.HENRY,K.HOLLANDER,Z.J.CARTER,K.A.SPASOV, JRNL AUTH 2 W.L.JORGENSEN,K.S.ANDERSON JRNL TITL COVALENT AND NONCOVALENT STRATEGIES FOR TARGETING LYS102 IN JRNL TITL 2 HIV-1 REVERSE TRANSCRIPTASE. JRNL REF EUR.J.MED.CHEM. V. 262 15894 2023 JRNL REFN ISSN 0223-5234 JRNL PMID 37883896 JRNL DOI 10.1016/J.EJMECH.2023.115894 REMARK 2 REMARK 2 RESOLUTION. 2.69 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.20.1_4487) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.69 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.96 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 36151 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.238 REMARK 3 R VALUE (WORKING SET) : 0.235 REMARK 3 FREE R VALUE : 0.284 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1808 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.9600 - 6.3100 0.99 2716 144 0.1960 0.2297 REMARK 3 2 6.3000 - 5.0100 1.00 2675 140 0.2413 0.2824 REMARK 3 3 5.0100 - 4.3800 1.00 2663 140 0.1981 0.2253 REMARK 3 4 4.3800 - 3.9800 1.00 2654 140 0.2122 0.2657 REMARK 3 5 3.9800 - 3.6900 1.00 2633 139 0.2349 0.3147 REMARK 3 6 3.6900 - 3.4800 1.00 2646 139 0.2481 0.3434 REMARK 3 7 3.4800 - 3.3000 1.00 2620 137 0.2694 0.3339 REMARK 3 8 3.3000 - 3.1600 1.00 2638 140 0.2780 0.3557 REMARK 3 9 3.1600 - 3.0400 1.00 2640 138 0.2797 0.3434 REMARK 3 10 3.0400 - 2.9300 1.00 2644 139 0.2838 0.3223 REMARK 3 11 2.9300 - 2.8400 1.00 2618 139 0.3108 0.3719 REMARK 3 12 2.8400 - 2.7600 0.99 2593 136 0.3530 0.3997 REMARK 3 13 2.7600 - 2.6900 0.98 2603 137 0.3829 0.4335 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.500 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.270 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 7634 REMARK 3 ANGLE : 1.143 10438 REMARK 3 CHIRALITY : 0.061 1153 REMARK 3 PLANARITY : 0.008 1334 REMARK 3 DIHEDRAL : 17.142 2719 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8U6F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-SEP-23. REMARK 100 THE DEPOSITION ID IS D_1000275381. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-OCT-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5-8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS-II REMARK 200 BEAMLINE : 17-ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9201 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36257 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.686 REMARK 200 RESOLUTION RANGE LOW (A) : 80.273 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.200 REMARK 200 R MERGE (I) : 0.09300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.69 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.65100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM IMIDAZOLE PH 6.5, 15% PEG 8000, REMARK 280 100 MM AMMONIUM SULFATE, 15 MM MAGNESIUM SULFATE, AND 5 MM REMARK 280 SPERMINE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 81.48450 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.18150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 81.48450 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 37.18150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 46550 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 246 REMARK 465 PRO A 247 REMARK 465 GLU A 248 REMARK 465 LYS A 249 REMARK 465 LYS A 287 REMARK 465 ALA A 288 REMARK 465 GLN A 547 REMARK 465 VAL A 548 REMARK 465 PRO B 1 REMARK 465 ILE B 2 REMARK 465 SER B 3 REMARK 465 VAL B 90 REMARK 465 GLN B 91 REMARK 465 LEU B 92 REMARK 465 GLY B 93 REMARK 465 LEU B 214 REMARK 465 THR B 215 REMARK 465 THR B 216 REMARK 465 PRO B 217 REMARK 465 ASP B 218 REMARK 465 LYS B 219 REMARK 465 LYS B 220 REMARK 465 HIS B 221 REMARK 465 GLN B 222 REMARK 465 LYS B 223 REMARK 465 GLU B 224 REMARK 465 PRO B 225 REMARK 465 PRO B 226 REMARK 465 ARG B 358 REMARK 465 GLY B 359 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 17 CG OD1 OD2 REMARK 470 LYS A 20 CG CD CE NZ REMARK 470 TRP A 24 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 24 CZ3 CH2 REMARK 470 LEU A 26 CG CD1 CD2 REMARK 470 THR A 27 OG1 CG2 REMARK 470 GLU A 29 CG CD OE1 OE2 REMARK 470 LYS A 32 CG CD CE NZ REMARK 470 LEU A 34 CG CD1 CD2 REMARK 470 GLU A 36 CG CD OE1 OE2 REMARK 470 ILE A 37 CG1 CG2 CD1 REMARK 470 GLU A 40 CG CD OE1 OE2 REMARK 470 LYS A 43 CG CD CE NZ REMARK 470 LYS A 46 CG CD CE NZ REMARK 470 ILE A 47 CG1 CG2 CD1 REMARK 470 ILE A 63 CG1 CG2 CD1 REMARK 470 LYS A 64 CG CD CE NZ REMARK 470 LYS A 65 CG CD CE NZ REMARK 470 LYS A 66 CG CD CE NZ REMARK 470 ASP A 67 CG OD1 OD2 REMARK 470 SER A 68 OG REMARK 470 THR A 69 OG1 CG2 REMARK 470 LYS A 70 CG CD CE NZ REMARK 470 ARG A 72 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 73 CG CD CE NZ REMARK 470 LEU A 74 CG CD1 CD2 REMARK 470 ARG A 83 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 89 CG CD OE1 OE2 REMARK 470 GLN A 91 CG CD OE1 NE2 REMARK 470 LYS A 102 CG CD CE NZ REMARK 470 GLU A 122 CG CD OE1 OE2 REMARK 470 PHE A 124 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 126 CG CD CE NZ REMARK 470 TYR A 127 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 THR A 131 OG1 CG2 REMARK 470 ILE A 132 CG1 CG2 CD1 REMARK 470 ARG A 143 CG CD NE CZ NH1 NH2 REMARK 470 TYR A 144 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 154 CG CD CE NZ REMARK 470 LYS A 166 CG CD CE NZ REMARK 470 LEU A 209 CG CD1 CD2 REMARK 470 LEU A 210 CG CD1 CD2 REMARK 470 LEU A 214 CG CD1 CD2 REMARK 470 LYS A 219 CG CD CE NZ REMARK 470 LYS A 220 CG CD CE NZ REMARK 470 GLN A 222 CG CD OE1 NE2 REMARK 470 LYS A 223 CG CD CE NZ REMARK 470 GLU A 224 CG CD OE1 OE2 REMARK 470 ILE A 244 CG1 CG2 CD1 REMARK 470 ASP A 250 CG OD1 OD2 REMARK 470 SER A 251 OG REMARK 470 TRP A 252 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 252 CZ3 CH2 REMARK 470 THR A 253 OG1 CG2 REMARK 470 VAL A 254 CG1 CG2 REMARK 470 ASP A 256 CG OD1 OD2 REMARK 470 ILE A 257 CG1 CG2 CD1 REMARK 470 GLN A 258 CG CD OE1 NE2 REMARK 470 LYS A 259 CG CD CE NZ REMARK 470 LEU A 260 CG CD1 CD2 REMARK 470 VAL A 261 CG1 CG2 REMARK 470 LYS A 263 CG CD CE NZ REMARK 470 ILE A 274 CG1 CG2 CD1 REMARK 470 LYS A 275 CG CD CE NZ REMARK 470 VAL A 276 CG1 CG2 REMARK 470 ARG A 277 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 278 CG CD OE1 NE2 REMARK 470 LEU A 279 CG CD1 CD2 REMARK 470 SER A 280 OG REMARK 470 LYS A 281 CG CD CE NZ REMARK 470 LEU A 282 CG CD1 CD2 REMARK 470 LEU A 283 CG CD1 CD2 REMARK 470 ARG A 284 CG CD NE CZ NH1 NH2 REMARK 470 THR A 286 OG1 CG2 REMARK 470 LEU A 289 CG CD1 CD2 REMARK 470 THR A 290 OG1 CG2 REMARK 470 GLU A 291 CG CD OE1 OE2 REMARK 470 VAL A 292 CG1 CG2 REMARK 470 ILE A 293 CG1 CG2 CD1 REMARK 470 LEU A 295 CG CD1 CD2 REMARK 470 THR A 296 OG1 CG2 REMARK 470 GLU A 297 CG CD OE1 OE2 REMARK 470 GLU A 298 CG CD OE1 OE2 REMARK 470 GLU A 300 CG CD OE1 OE2 REMARK 470 LEU A 301 CG CD1 CD2 REMARK 470 GLU A 302 CG CD OE1 OE2 REMARK 470 GLU A 305 CG CD OE1 OE2 REMARK 470 ARG A 307 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 308 CG CD OE1 OE2 REMARK 470 ILE A 309 CG1 CG2 CD1 REMARK 470 LYS A 311 CG CD CE NZ REMARK 470 GLU A 312 CG CD OE1 OE2 REMARK 470 ARG A 448 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 551 CG CD1 CD2 REMARK 470 VAL A 552 CG1 CG2 REMARK 470 ILE B 5 CG1 CG2 CD1 REMARK 470 LYS B 11 CG CD CE NZ REMARK 470 LYS B 13 CG CD CE NZ REMARK 470 LYS B 65 CG CD CE NZ REMARK 470 LYS B 66 CG CD CE NZ REMARK 470 ASP B 67 CG OD1 OD2 REMARK 470 SER B 68 OG REMARK 470 LYS B 70 CG CD CE NZ REMARK 470 GLN B 85 CG CD OE1 NE2 REMARK 470 ASP B 86 CG OD1 OD2 REMARK 470 TRP B 88 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP B 88 CZ3 CH2 REMARK 470 GLU B 89 CG CD OE1 OE2 REMARK 470 GLU B 122 CG CD OE1 OE2 REMARK 470 LYS B 126 CG CD CE NZ REMARK 470 LEU B 149 CG CD1 CD2 REMARK 470 LYS B 166 CG CD CE NZ REMARK 470 LEU B 168 CG CD1 CD2 REMARK 470 LYS B 172 CG CD CE NZ REMARK 470 LYS B 173 CG CD CE NZ REMARK 470 GLN B 174 CG CD OE1 NE2 REMARK 470 ILE B 178 CG1 CG2 CD1 REMARK 470 GLN B 197 CG CD OE1 NE2 REMARK 470 HIS B 198 CG ND1 CD2 CE1 NE2 REMARK 470 ARG B 199 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 201 CG CD CE NZ REMARK 470 ILE B 202 CG1 CG2 CD1 REMARK 470 GLU B 203 CG CD OE1 OE2 REMARK 470 GLU B 204 CG CD OE1 OE2 REMARK 470 ARG B 206 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 207 CG CD OE1 NE2 REMARK 470 LEU B 209 CG CD1 CD2 REMARK 470 ARG B 211 CG CD NE CZ NH1 NH2 REMARK 470 PHE B 227 CG CD1 CD2 CE1 CE2 CZ REMARK 470 TRP B 229 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP B 229 CZ3 CH2 REMARK 470 ASP B 237 CG OD1 OD2 REMARK 470 LYS B 238 CG CD CE NZ REMARK 470 LYS B 275 CG CD CE NZ REMARK 470 LYS B 281 CG CD CE NZ REMARK 470 GLU B 297 CG CD OE1 OE2 REMARK 470 MET B 357 CG SD CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 66 -126.72 58.39 REMARK 500 PRO A 119 179.14 -58.84 REMARK 500 TYR A 183 -72.01 -98.30 REMARK 500 ASP A 218 -54.57 -120.78 REMARK 500 MET A 230 42.86 38.66 REMARK 500 ARG A 284 -130.40 55.57 REMARK 500 THR A 296 9.86 58.20 REMARK 500 GLU A 297 22.67 44.97 REMARK 500 PHE A 346 -7.65 74.28 REMARK 500 THR A 362 169.82 177.17 REMARK 500 ASN A 418 57.48 -95.05 REMARK 500 ASN A 471 69.81 60.00 REMARK 500 LYS A 512 146.45 -170.07 REMARK 500 THR B 128 47.26 -99.64 REMARK 500 LYS B 172 -9.87 71.23 REMARK 500 MET B 184 -131.13 55.19 REMARK 500 TYR B 271 63.02 -116.99 REMARK 500 ARG B 284 133.92 -38.61 REMARK 500 THR B 286 56.52 -90.33 REMARK 500 ALA B 355 -169.52 -127.44 REMARK 500 HIS B 361 2.25 59.05 REMARK 500 REMARK 500 REMARK: NULL DBREF 8U6F A 1 552 UNP P03366 POL_HV1B1 600 1151 DBREF 8U6F B 1 428 UNP P03366 POL_HV1B1 600 1027 SEQADV 8U6F MET A -1 UNP P03366 EXPRESSION TAG SEQADV 8U6F VAL A 0 UNP P03366 EXPRESSION TAG SEQADV 8U6F ALA A 172 UNP P03366 LYS 771 ENGINEERED MUTATION SEQADV 8U6F ALA A 173 UNP P03366 LYS 772 ENGINEERED MUTATION SEQADV 8U6F SER A 280 UNP P03366 CYS 879 ENGINEERED MUTATION SEQADV 8U6F SER B 280 UNP P03366 CYS 879 ENGINEERED MUTATION SEQRES 1 A 554 MET VAL PRO ILE SER PRO ILE GLU THR VAL PRO VAL LYS SEQRES 2 A 554 LEU LYS PRO GLY MET ASP GLY PRO LYS VAL LYS GLN TRP SEQRES 3 A 554 PRO LEU THR GLU GLU LYS ILE LYS ALA LEU VAL GLU ILE SEQRES 4 A 554 CYS THR GLU MET GLU LYS GLU GLY LYS ILE SER LYS ILE SEQRES 5 A 554 GLY PRO GLU ASN PRO TYR ASN THR PRO VAL PHE ALA ILE SEQRES 6 A 554 LYS LYS LYS ASP SER THR LYS TRP ARG LYS LEU VAL ASP SEQRES 7 A 554 PHE ARG GLU LEU ASN LYS ARG THR GLN ASP PHE TRP GLU SEQRES 8 A 554 VAL GLN LEU GLY ILE PRO HIS PRO ALA GLY LEU LYS LYS SEQRES 9 A 554 LYS LYS SER VAL THR VAL LEU ASP VAL GLY ASP ALA TYR SEQRES 10 A 554 PHE SER VAL PRO LEU ASP GLU ASP PHE ARG LYS TYR THR SEQRES 11 A 554 ALA PHE THR ILE PRO SER ILE ASN ASN GLU THR PRO GLY SEQRES 12 A 554 ILE ARG TYR GLN TYR ASN VAL LEU PRO GLN GLY TRP LYS SEQRES 13 A 554 GLY SER PRO ALA ILE PHE GLN SER SER MET THR LYS ILE SEQRES 14 A 554 LEU GLU PRO PHE ALA ALA GLN ASN PRO ASP ILE VAL ILE SEQRES 15 A 554 TYR GLN TYR MET ASP ASP LEU TYR VAL GLY SER ASP LEU SEQRES 16 A 554 GLU ILE GLY GLN HIS ARG THR LYS ILE GLU GLU LEU ARG SEQRES 17 A 554 GLN HIS LEU LEU ARG TRP GLY LEU THR THR PRO ASP LYS SEQRES 18 A 554 LYS HIS GLN LYS GLU PRO PRO PHE LEU TRP MET GLY TYR SEQRES 19 A 554 GLU LEU HIS PRO ASP LYS TRP THR VAL GLN PRO ILE VAL SEQRES 20 A 554 LEU PRO GLU LYS ASP SER TRP THR VAL ASN ASP ILE GLN SEQRES 21 A 554 LYS LEU VAL GLY LYS LEU ASN TRP ALA SER GLN ILE TYR SEQRES 22 A 554 PRO GLY ILE LYS VAL ARG GLN LEU SER LYS LEU LEU ARG SEQRES 23 A 554 GLY THR LYS ALA LEU THR GLU VAL ILE PRO LEU THR GLU SEQRES 24 A 554 GLU ALA GLU LEU GLU LEU ALA GLU ASN ARG GLU ILE LEU SEQRES 25 A 554 LYS GLU PRO VAL HIS GLY VAL TYR TYR ASP PRO SER LYS SEQRES 26 A 554 ASP LEU ILE ALA GLU ILE GLN LYS GLN GLY GLN GLY GLN SEQRES 27 A 554 TRP THR TYR GLN ILE TYR GLN GLU PRO PHE LYS ASN LEU SEQRES 28 A 554 LYS THR GLY LYS TYR ALA ARG MET ARG GLY ALA HIS THR SEQRES 29 A 554 ASN ASP VAL LYS GLN LEU THR GLU ALA VAL GLN LYS ILE SEQRES 30 A 554 THR THR GLU SER ILE VAL ILE TRP GLY LYS THR PRO LYS SEQRES 31 A 554 PHE LYS LEU PRO ILE GLN LYS GLU THR TRP GLU THR TRP SEQRES 32 A 554 TRP THR GLU TYR TRP GLN ALA THR TRP ILE PRO GLU TRP SEQRES 33 A 554 GLU PHE VAL ASN THR PRO PRO LEU VAL LYS LEU TRP TYR SEQRES 34 A 554 GLN LEU GLU LYS GLU PRO ILE VAL GLY ALA GLU THR PHE SEQRES 35 A 554 TYR VAL ASP GLY ALA ALA ASN ARG GLU THR LYS LEU GLY SEQRES 36 A 554 LYS ALA GLY TYR VAL THR ASN LYS GLY ARG GLN LYS VAL SEQRES 37 A 554 VAL PRO LEU THR ASN THR THR ASN GLN LYS THR GLU LEU SEQRES 38 A 554 GLN ALA ILE TYR LEU ALA LEU GLN ASP SER GLY LEU GLU SEQRES 39 A 554 VAL ASN ILE VAL THR ASP SER GLN TYR ALA LEU GLY ILE SEQRES 40 A 554 ILE GLN ALA GLN PRO ASP LYS SER GLU SER GLU LEU VAL SEQRES 41 A 554 ASN GLN ILE ILE GLU GLN LEU ILE LYS LYS GLU LYS VAL SEQRES 42 A 554 TYR LEU ALA TRP VAL PRO ALA HIS LYS GLY ILE GLY GLY SEQRES 43 A 554 ASN GLU GLN VAL ASP LYS LEU VAL SEQRES 1 B 428 PRO ILE SER PRO ILE GLU THR VAL PRO VAL LYS LEU LYS SEQRES 2 B 428 PRO GLY MET ASP GLY PRO LYS VAL LYS GLN TRP PRO LEU SEQRES 3 B 428 THR GLU GLU LYS ILE LYS ALA LEU VAL GLU ILE CYS THR SEQRES 4 B 428 GLU MET GLU LYS GLU GLY LYS ILE SER LYS ILE GLY PRO SEQRES 5 B 428 GLU ASN PRO TYR ASN THR PRO VAL PHE ALA ILE LYS LYS SEQRES 6 B 428 LYS ASP SER THR LYS TRP ARG LYS LEU VAL ASP PHE ARG SEQRES 7 B 428 GLU LEU ASN LYS ARG THR GLN ASP PHE TRP GLU VAL GLN SEQRES 8 B 428 LEU GLY ILE PRO HIS PRO ALA GLY LEU LYS LYS LYS LYS SEQRES 9 B 428 SER VAL THR VAL LEU ASP VAL GLY ASP ALA TYR PHE SER SEQRES 10 B 428 VAL PRO LEU ASP GLU ASP PHE ARG LYS TYR THR ALA PHE SEQRES 11 B 428 THR ILE PRO SER ILE ASN ASN GLU THR PRO GLY ILE ARG SEQRES 12 B 428 TYR GLN TYR ASN VAL LEU PRO GLN GLY TRP LYS GLY SER SEQRES 13 B 428 PRO ALA ILE PHE GLN SER SER MET THR LYS ILE LEU GLU SEQRES 14 B 428 PRO PHE LYS LYS GLN ASN PRO ASP ILE VAL ILE TYR GLN SEQRES 15 B 428 TYR MET ASP ASP LEU TYR VAL GLY SER ASP LEU GLU ILE SEQRES 16 B 428 GLY GLN HIS ARG THR LYS ILE GLU GLU LEU ARG GLN HIS SEQRES 17 B 428 LEU LEU ARG TRP GLY LEU THR THR PRO ASP LYS LYS HIS SEQRES 18 B 428 GLN LYS GLU PRO PRO PHE LEU TRP MET GLY TYR GLU LEU SEQRES 19 B 428 HIS PRO ASP LYS TRP THR VAL GLN PRO ILE VAL LEU PRO SEQRES 20 B 428 GLU LYS ASP SER TRP THR VAL ASN ASP ILE GLN LYS LEU SEQRES 21 B 428 VAL GLY LYS LEU ASN TRP ALA SER GLN ILE TYR PRO GLY SEQRES 22 B 428 ILE LYS VAL ARG GLN LEU SER LYS LEU LEU ARG GLY THR SEQRES 23 B 428 LYS ALA LEU THR GLU VAL ILE PRO LEU THR GLU GLU ALA SEQRES 24 B 428 GLU LEU GLU LEU ALA GLU ASN ARG GLU ILE LEU LYS GLU SEQRES 25 B 428 PRO VAL HIS GLY VAL TYR TYR ASP PRO SER LYS ASP LEU SEQRES 26 B 428 ILE ALA GLU ILE GLN LYS GLN GLY GLN GLY GLN TRP THR SEQRES 27 B 428 TYR GLN ILE TYR GLN GLU PRO PHE LYS ASN LEU LYS THR SEQRES 28 B 428 GLY LYS TYR ALA ARG MET ARG GLY ALA HIS THR ASN ASP SEQRES 29 B 428 VAL LYS GLN LEU THR GLU ALA VAL GLN LYS ILE THR THR SEQRES 30 B 428 GLU SER ILE VAL ILE TRP GLY LYS THR PRO LYS PHE LYS SEQRES 31 B 428 LEU PRO ILE GLN LYS GLU THR TRP GLU THR TRP TRP THR SEQRES 32 B 428 GLU TYR TRP GLN ALA THR TRP ILE PRO GLU TRP GLU PHE SEQRES 33 B 428 VAL ASN THR PRO PRO LEU VAL LYS LEU TRP TYR GLN HET VU8 A 601 26 HETNAM VU8 N-{2-[5-CHLORO-2-(3-CHLORO-5-CYANOPHENOXY) HETNAM 2 VU8 PHENOXY]ETHYL}-N-METHYLPROP-2-ENAMIDE FORMUL 3 VU8 C19 H16 CL2 N2 O3 FORMUL 4 HOH *17(H2 O) HELIX 1 AA1 THR A 27 GLY A 45 1 19 HELIX 2 AA2 PHE A 77 THR A 84 1 8 HELIX 3 AA3 HIS A 96 LEU A 100 5 5 HELIX 4 AA4 GLY A 112 VAL A 118 5 7 HELIX 5 AA5 ASP A 121 ARG A 125 5 5 HELIX 6 AA6 SER A 134 GLU A 138 5 5 HELIX 7 AA7 LYS A 154 ASN A 175 1 22 HELIX 8 AA8 GLU A 194 ARG A 211 1 18 HELIX 9 AA9 VAL A 254 LYS A 259 1 6 HELIX 10 AB1 LYS A 259 SER A 268 1 10 HELIX 11 AB2 VAL A 276 ARG A 284 1 9 HELIX 12 AB3 ALA A 299 ALA A 304 1 6 HELIX 13 AB4 ASN A 363 GLY A 384 1 22 HELIX 14 AB5 GLN A 394 TYR A 405 1 12 HELIX 15 AB6 THR A 473 SER A 489 1 17 HELIX 16 AB7 SER A 499 ALA A 508 1 10 HELIX 17 AB8 SER A 515 LYS A 528 1 14 HELIX 18 AB9 THR B 27 GLU B 44 1 18 HELIX 19 AC1 PHE B 77 LYS B 82 1 6 HELIX 20 AC2 GLY B 112 VAL B 118 5 7 HELIX 21 AC3 PHE B 124 TYR B 127 5 4 HELIX 22 AC4 SER B 134 GLU B 138 5 5 HELIX 23 AC5 LYS B 154 LEU B 168 1 15 HELIX 24 AC6 GLU B 194 GLY B 213 1 20 HELIX 25 AC7 VAL B 254 TYR B 271 1 18 HELIX 26 AC8 VAL B 276 LEU B 282 1 7 HELIX 27 AC9 THR B 296 GLU B 312 1 17 HELIX 28 AD1 ASN B 363 GLY B 384 1 22 HELIX 29 AD2 GLN B 394 TRP B 402 1 9 HELIX 30 AD3 THR B 403 TYR B 405 5 3 HELIX 31 AD4 LYS B 424 GLN B 428 5 5 SHEET 1 AA1 3 ILE A 47 LYS A 49 0 SHEET 2 AA1 3 ILE A 142 TYR A 146 -1 O GLN A 145 N SER A 48 SHEET 3 AA1 3 ALA A 129 ILE A 132 -1 N PHE A 130 O TYR A 144 SHEET 1 AA2 2 VAL A 60 LYS A 64 0 SHEET 2 AA2 2 TRP A 71 VAL A 75 -1 O ARG A 72 N ILE A 63 SHEET 1 AA3 3 SER A 105 ASP A 110 0 SHEET 2 AA3 3 ASP A 186 SER A 191 -1 O VAL A 189 N THR A 107 SHEET 3 AA3 3 VAL A 179 GLN A 182 -1 N TYR A 181 O TYR A 188 SHEET 1 AA4 3 PHE A 227 TRP A 229 0 SHEET 2 AA4 3 TYR A 232 LEU A 234 -1 O TYR A 232 N TRP A 229 SHEET 3 AA4 3 TRP A 239 VAL A 241 -1 O THR A 240 N GLU A 233 SHEET 1 AA5 5 LYS A 347 ALA A 355 0 SHEET 2 AA5 5 GLN A 336 GLU A 344 -1 N ILE A 341 O LYS A 350 SHEET 3 AA5 5 ILE A 326 GLY A 333 -1 N GLN A 330 O THR A 338 SHEET 4 AA5 5 LYS A 388 LEU A 391 1 O LYS A 388 N ALA A 327 SHEET 5 AA5 5 TRP A 414 PHE A 416 1 O GLU A 415 N LEU A 391 SHEET 1 AA6 2 HIS A 361 THR A 362 0 SHEET 2 AA6 2 LYS A 512 SER A 513 -1 O LYS A 512 N THR A 362 SHEET 1 AA7 5 GLN A 464 LEU A 469 0 SHEET 2 AA7 5 GLY A 453 THR A 459 -1 N GLY A 453 O LEU A 469 SHEET 3 AA7 5 GLU A 438 ALA A 446 -1 N TYR A 441 O VAL A 458 SHEET 4 AA7 5 GLU A 492 THR A 497 1 O ASN A 494 N PHE A 440 SHEET 5 AA7 5 LYS A 530 TRP A 535 1 O TYR A 532 N ILE A 495 SHEET 1 AA8 3 ILE B 47 SER B 48 0 SHEET 2 AA8 3 ILE B 142 TYR B 146 -1 O GLN B 145 N SER B 48 SHEET 3 AA8 3 ALA B 129 ILE B 132 -1 N ILE B 132 O ILE B 142 SHEET 1 AA9 2 VAL B 60 LYS B 64 0 SHEET 2 AA9 2 TRP B 71 VAL B 75 -1 O ARG B 72 N ILE B 63 SHEET 1 AB1 4 VAL B 179 TYR B 183 0 SHEET 2 AB1 4 ASP B 186 SER B 191 -1 O TYR B 188 N TYR B 181 SHEET 3 AB1 4 SER B 105 ASP B 110 -1 N LEU B 109 O LEU B 187 SHEET 4 AB1 4 GLY B 231 LEU B 234 -1 O LEU B 234 N VAL B 106 SHEET 1 AB2 2 TRP B 252 THR B 253 0 SHEET 2 AB2 2 VAL B 292 ILE B 293 -1 O ILE B 293 N TRP B 252 SHEET 1 AB3 5 LYS B 347 TYR B 354 0 SHEET 2 AB3 5 GLN B 336 GLU B 344 -1 N ILE B 341 O LEU B 349 SHEET 3 AB3 5 ILE B 326 GLY B 333 -1 N ILE B 326 O TYR B 342 SHEET 4 AB3 5 LYS B 388 LEU B 391 1 O LYS B 388 N ALA B 327 SHEET 5 AB3 5 GLU B 413 PHE B 416 1 O GLU B 415 N LEU B 391 CISPEP 1 PRO A 225 PRO A 226 0 18.34 CISPEP 2 PRO A 420 PRO A 421 0 0.06 CRYST1 162.969 74.363 109.503 90.00 99.89 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006136 0.000000 0.001070 0.00000 SCALE2 0.000000 0.013448 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009270 0.00000