data_8U6X # _entry.id 8U6X # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.397 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8U6X pdb_00008u6x 10.2210/pdb8u6x/pdb WWPDB D_1000277476 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2024-01-31 2 'Structure model' 1 1 2024-10-16 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' pdbx_entry_details 2 2 'Structure model' pdbx_modification_feature # _pdbx_audit_revision_item.ordinal 1 _pdbx_audit_revision_item.revision_ordinal 2 _pdbx_audit_revision_item.data_content_type 'Structure model' _pdbx_audit_revision_item.item '_pdbx_entry_details.has_protein_modification' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8U6X _pdbx_database_status.recvd_initial_deposition_date 2023-09-14 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_contact_author.id 2 _pdbx_contact_author.email adelew@waikato.ac.nz _pdbx_contact_author.name_first Adele _pdbx_contact_author.name_last Williamson _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0001-8139-1071 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Williamson, A.' 1 0000-0001-8139-1071 'Pan, J.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Bmc Microbiol.' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1471-2180 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 24 _citation.language ? _citation.page_first 29 _citation.page_last 29 _citation.title 'A role for the ATP-dependent DNA ligase lig E of Neisseria gonorrhoeae in biofilm formation.' _citation.year 2024 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1186/s12866-024-03193-9 _citation.pdbx_database_id_PubMed 38245708 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Pan, J.' 1 ? primary 'Singh, A.' 2 ? primary 'Hanning, K.' 3 ? primary 'Hicks, J.' 4 ? primary 'Williamson, A.' 5 0000-0001-8139-1071 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'DNA ligase' 32029.357 1 ? ? ? ? 2 polymer syn ;DNA (5'-D(*TP*TP*CP*CP*GP*AP*TP*AP*GP*TP*GP*GP*GP*GP*TP*CP*GP*CP*AP*AP*T)-3') ; 6494.194 1 ? ? ? ? 3 polymer syn ;DNA (5'-D(*AP*TP*TP*GP*CP*GP*AP*CP*CP*CP*CP*AP*CP*TP*AP*TP*CP*GP*GP*AP*A)-3') ; 6392.151 1 ? ? ? ? 4 non-polymer syn 'ADENOSINE MONOPHOSPHATE' 347.221 1 ? ? ? ? 5 non-polymer syn 'THIOCYANATE ION' 58.082 3 ? ? ? ? 6 water nat water 18.015 42 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;MSYYHHHHHHLESTSLYKKAGLMADLMLAQEYKGQDIAGWAMSEKLDGVRAYWDGKHLISRQGYAFTPPKGFTAQFPPYP LDGELYSGRGQFEQISATVRSVSSDWRGIRLHVFDVPKAQGNLYQRLAVATQWLKTHPNAPITIIPQIKVRDRRHAMDFL KQIEAQGGEGVMLRQPESRYSGGRSSQLLKLKSQYDDECTVTRHYEGKGRNAGRLGAVGCKNRHGEFRIGSGFKDKDRDN PPKIGTLITYRYRGFTRKGTPKFATFVRVRTDRHHHHHH ; ;MSYYHHHHHHLESTSLYKKAGLMADLMLAQEYKGQDIAGWAMSEKLDGVRAYWDGKHLISRQGYAFTPPKGFTAQFPPYP LDGELYSGRGQFEQISATVRSVSSDWRGIRLHVFDVPKAQGNLYQRLAVATQWLKTHPNAPITIIPQIKVRDRRHAMDFL KQIEAQGGEGVMLRQPESRYSGGRSSQLLKLKSQYDDECTVTRHYEGKGRNAGRLGAVGCKNRHGEFRIGSGFKDKDRDN PPKIGTLITYRYRGFTRKGTPKFATFVRVRTDRHHHHHH ; A ? 2 polydeoxyribonucleotide no no ;(DT)(DT)(DC)(DC)(DG)(DA)(DT)(DA)(DG)(DT)(DG)(DG)(DG)(DG)(DT)(DC)(DG)(DC)(DA)(DA) (DT) ; TTCCGATAGTGGGGTCGCAAT B ? 3 polydeoxyribonucleotide no no ;(DA)(DT)(DT)(DG)(DC)(DG)(DA)(DC)(DC)(DC)(DC)(DA)(DC)(DT)(DA)(DT)(DC)(DG)(DG)(DA) (DA) ; ATTGCGACCCCACTATCGGAA C ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 'ADENOSINE MONOPHOSPHATE' AMP 5 'THIOCYANATE ION' SCN 6 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 SER n 1 3 TYR n 1 4 TYR n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 HIS n 1 9 HIS n 1 10 HIS n 1 11 LEU n 1 12 GLU n 1 13 SER n 1 14 THR n 1 15 SER n 1 16 LEU n 1 17 TYR n 1 18 LYS n 1 19 LYS n 1 20 ALA n 1 21 GLY n 1 22 LEU n 1 23 MET n 1 24 ALA n 1 25 ASP n 1 26 LEU n 1 27 MET n 1 28 LEU n 1 29 ALA n 1 30 GLN n 1 31 GLU n 1 32 TYR n 1 33 LYS n 1 34 GLY n 1 35 GLN n 1 36 ASP n 1 37 ILE n 1 38 ALA n 1 39 GLY n 1 40 TRP n 1 41 ALA n 1 42 MET n 1 43 SER n 1 44 GLU n 1 45 LYS n 1 46 LEU n 1 47 ASP n 1 48 GLY n 1 49 VAL n 1 50 ARG n 1 51 ALA n 1 52 TYR n 1 53 TRP n 1 54 ASP n 1 55 GLY n 1 56 LYS n 1 57 HIS n 1 58 LEU n 1 59 ILE n 1 60 SER n 1 61 ARG n 1 62 GLN n 1 63 GLY n 1 64 TYR n 1 65 ALA n 1 66 PHE n 1 67 THR n 1 68 PRO n 1 69 PRO n 1 70 LYS n 1 71 GLY n 1 72 PHE n 1 73 THR n 1 74 ALA n 1 75 GLN n 1 76 PHE n 1 77 PRO n 1 78 PRO n 1 79 TYR n 1 80 PRO n 1 81 LEU n 1 82 ASP n 1 83 GLY n 1 84 GLU n 1 85 LEU n 1 86 TYR n 1 87 SER n 1 88 GLY n 1 89 ARG n 1 90 GLY n 1 91 GLN n 1 92 PHE n 1 93 GLU n 1 94 GLN n 1 95 ILE n 1 96 SER n 1 97 ALA n 1 98 THR n 1 99 VAL n 1 100 ARG n 1 101 SER n 1 102 VAL n 1 103 SER n 1 104 SER n 1 105 ASP n 1 106 TRP n 1 107 ARG n 1 108 GLY n 1 109 ILE n 1 110 ARG n 1 111 LEU n 1 112 HIS n 1 113 VAL n 1 114 PHE n 1 115 ASP n 1 116 VAL n 1 117 PRO n 1 118 LYS n 1 119 ALA n 1 120 GLN n 1 121 GLY n 1 122 ASN n 1 123 LEU n 1 124 TYR n 1 125 GLN n 1 126 ARG n 1 127 LEU n 1 128 ALA n 1 129 VAL n 1 130 ALA n 1 131 THR n 1 132 GLN n 1 133 TRP n 1 134 LEU n 1 135 LYS n 1 136 THR n 1 137 HIS n 1 138 PRO n 1 139 ASN n 1 140 ALA n 1 141 PRO n 1 142 ILE n 1 143 THR n 1 144 ILE n 1 145 ILE n 1 146 PRO n 1 147 GLN n 1 148 ILE n 1 149 LYS n 1 150 VAL n 1 151 ARG n 1 152 ASP n 1 153 ARG n 1 154 ARG n 1 155 HIS n 1 156 ALA n 1 157 MET n 1 158 ASP n 1 159 PHE n 1 160 LEU n 1 161 LYS n 1 162 GLN n 1 163 ILE n 1 164 GLU n 1 165 ALA n 1 166 GLN n 1 167 GLY n 1 168 GLY n 1 169 GLU n 1 170 GLY n 1 171 VAL n 1 172 MET n 1 173 LEU n 1 174 ARG n 1 175 GLN n 1 176 PRO n 1 177 GLU n 1 178 SER n 1 179 ARG n 1 180 TYR n 1 181 SER n 1 182 GLY n 1 183 GLY n 1 184 ARG n 1 185 SER n 1 186 SER n 1 187 GLN n 1 188 LEU n 1 189 LEU n 1 190 LYS n 1 191 LEU n 1 192 LYS n 1 193 SER n 1 194 GLN n 1 195 TYR n 1 196 ASP n 1 197 ASP n 1 198 GLU n 1 199 CYS n 1 200 THR n 1 201 VAL n 1 202 THR n 1 203 ARG n 1 204 HIS n 1 205 TYR n 1 206 GLU n 1 207 GLY n 1 208 LYS n 1 209 GLY n 1 210 ARG n 1 211 ASN n 1 212 ALA n 1 213 GLY n 1 214 ARG n 1 215 LEU n 1 216 GLY n 1 217 ALA n 1 218 VAL n 1 219 GLY n 1 220 CYS n 1 221 LYS n 1 222 ASN n 1 223 ARG n 1 224 HIS n 1 225 GLY n 1 226 GLU n 1 227 PHE n 1 228 ARG n 1 229 ILE n 1 230 GLY n 1 231 SER n 1 232 GLY n 1 233 PHE n 1 234 LYS n 1 235 ASP n 1 236 LYS n 1 237 ASP n 1 238 ARG n 1 239 ASP n 1 240 ASN n 1 241 PRO n 1 242 PRO n 1 243 LYS n 1 244 ILE n 1 245 GLY n 1 246 THR n 1 247 LEU n 1 248 ILE n 1 249 THR n 1 250 TYR n 1 251 ARG n 1 252 TYR n 1 253 ARG n 1 254 GLY n 1 255 PHE n 1 256 THR n 1 257 ARG n 1 258 LYS n 1 259 GLY n 1 260 THR n 1 261 PRO n 1 262 LYS n 1 263 PHE n 1 264 ALA n 1 265 THR n 1 266 PHE n 1 267 VAL n 1 268 ARG n 1 269 VAL n 1 270 ARG n 1 271 THR n 1 272 ASP n 1 273 ARG n 1 274 HIS n 1 275 HIS n 1 276 HIS n 1 277 HIS n 1 278 HIS n 1 279 HIS n 2 1 DT n 2 2 DT n 2 3 DC n 2 4 DC n 2 5 DG n 2 6 DA n 2 7 DT n 2 8 DA n 2 9 DG n 2 10 DT n 2 11 DG n 2 12 DG n 2 13 DG n 2 14 DG n 2 15 DT n 2 16 DC n 2 17 DG n 2 18 DC n 2 19 DA n 2 20 DA n 2 21 DT n 3 1 DA n 3 2 DT n 3 3 DT n 3 4 DG n 3 5 DC n 3 6 DG n 3 7 DA n 3 8 DC n 3 9 DC n 3 10 DC n 3 11 DC n 3 12 DA n 3 13 DC n 3 14 DT n 3 15 DA n 3 16 DT n 3 17 DC n 3 18 DG n 3 19 DG n 3 20 DA n 3 21 DA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 279 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene NGFG_01849 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Neisseria gonorrhoeae MS11' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 528354 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21 pLysS' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'pDEST 17' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 2 1 sample 1 21 'synthetic construct' ? 32630 ? 3 1 sample 1 21 'synthetic construct' ? 32630 ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 AMP non-polymer . 'ADENOSINE MONOPHOSPHATE' ? 'C10 H14 N5 O7 P' 347.221 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SCN non-polymer . 'THIOCYANATE ION' ? 'C N S -1' 58.082 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 -22 ? ? ? A . n A 1 2 SER 2 -21 ? ? ? A . n A 1 3 TYR 3 -20 ? ? ? A . n A 1 4 TYR 4 -19 ? ? ? A . n A 1 5 HIS 5 -18 ? ? ? A . n A 1 6 HIS 6 -17 ? ? ? A . n A 1 7 HIS 7 -16 ? ? ? A . n A 1 8 HIS 8 -15 ? ? ? A . n A 1 9 HIS 9 -14 ? ? ? A . n A 1 10 HIS 10 -13 ? ? ? A . n A 1 11 LEU 11 -12 ? ? ? A . n A 1 12 GLU 12 -11 ? ? ? A . n A 1 13 SER 13 -10 ? ? ? A . n A 1 14 THR 14 -9 ? ? ? A . n A 1 15 SER 15 -8 ? ? ? A . n A 1 16 LEU 16 -7 ? ? ? A . n A 1 17 TYR 17 -6 ? ? ? A . n A 1 18 LYS 18 -5 ? ? ? A . n A 1 19 LYS 19 -4 ? ? ? A . n A 1 20 ALA 20 -3 ? ? ? A . n A 1 21 GLY 21 -2 ? ? ? A . n A 1 22 LEU 22 -1 ? ? ? A . n A 1 23 MET 23 0 ? ? ? A . n A 1 24 ALA 24 1 1 ALA ALA A . n A 1 25 ASP 25 2 2 ASP ASP A . n A 1 26 LEU 26 3 3 LEU LEU A . n A 1 27 MET 27 4 4 MET MET A . n A 1 28 LEU 28 5 5 LEU LEU A . n A 1 29 ALA 29 6 6 ALA ALA A . n A 1 30 GLN 30 7 7 GLN GLN A . n A 1 31 GLU 31 8 8 GLU GLU A . n A 1 32 TYR 32 9 9 TYR TYR A . n A 1 33 LYS 33 10 10 LYS LYS A . n A 1 34 GLY 34 11 11 GLY GLY A . n A 1 35 GLN 35 12 12 GLN GLN A . n A 1 36 ASP 36 13 13 ASP ASP A . n A 1 37 ILE 37 14 14 ILE ILE A . n A 1 38 ALA 38 15 15 ALA ALA A . n A 1 39 GLY 39 16 16 GLY GLY A . n A 1 40 TRP 40 17 17 TRP TRP A . n A 1 41 ALA 41 18 18 ALA ALA A . n A 1 42 MET 42 19 19 MET MET A . n A 1 43 SER 43 20 20 SER SER A . n A 1 44 GLU 44 21 21 GLU GLU A . n A 1 45 LYS 45 22 22 LYS LYS A . n A 1 46 LEU 46 23 23 LEU LEU A . n A 1 47 ASP 47 24 24 ASP ASP A . n A 1 48 GLY 48 25 25 GLY GLY A . n A 1 49 VAL 49 26 26 VAL VAL A . n A 1 50 ARG 50 27 27 ARG ARG A . n A 1 51 ALA 51 28 28 ALA ALA A . n A 1 52 TYR 52 29 29 TYR TYR A . n A 1 53 TRP 53 30 30 TRP TRP A . n A 1 54 ASP 54 31 31 ASP ASP A . n A 1 55 GLY 55 32 32 GLY GLY A . n A 1 56 LYS 56 33 33 LYS LYS A . n A 1 57 HIS 57 34 34 HIS HIS A . n A 1 58 LEU 58 35 35 LEU LEU A . n A 1 59 ILE 59 36 36 ILE ILE A . n A 1 60 SER 60 37 37 SER SER A . n A 1 61 ARG 61 38 38 ARG ARG A . n A 1 62 GLN 62 39 39 GLN GLN A . n A 1 63 GLY 63 40 40 GLY GLY A . n A 1 64 TYR 64 41 41 TYR TYR A . n A 1 65 ALA 65 42 42 ALA ALA A . n A 1 66 PHE 66 43 43 PHE PHE A . n A 1 67 THR 67 44 44 THR THR A . n A 1 68 PRO 68 45 45 PRO PRO A . n A 1 69 PRO 69 46 46 PRO PRO A . n A 1 70 LYS 70 47 47 LYS LYS A . n A 1 71 GLY 71 48 48 GLY GLY A . n A 1 72 PHE 72 49 49 PHE PHE A . n A 1 73 THR 73 50 50 THR THR A . n A 1 74 ALA 74 51 51 ALA ALA A . n A 1 75 GLN 75 52 52 GLN GLN A . n A 1 76 PHE 76 53 53 PHE PHE A . n A 1 77 PRO 77 54 54 PRO PRO A . n A 1 78 PRO 78 55 55 PRO PRO A . n A 1 79 TYR 79 56 56 TYR TYR A . n A 1 80 PRO 80 57 57 PRO PRO A . n A 1 81 LEU 81 58 58 LEU LEU A . n A 1 82 ASP 82 59 59 ASP ASP A . n A 1 83 GLY 83 60 60 GLY GLY A . n A 1 84 GLU 84 61 61 GLU GLU A . n A 1 85 LEU 85 62 62 LEU LEU A . n A 1 86 TYR 86 63 63 TYR TYR A . n A 1 87 SER 87 64 64 SER SER A . n A 1 88 GLY 88 65 65 GLY GLY A . n A 1 89 ARG 89 66 66 ARG ARG A . n A 1 90 GLY 90 67 67 GLY GLY A . n A 1 91 GLN 91 68 68 GLN GLN A . n A 1 92 PHE 92 69 69 PHE PHE A . n A 1 93 GLU 93 70 70 GLU GLU A . n A 1 94 GLN 94 71 71 GLN GLN A . n A 1 95 ILE 95 72 72 ILE ILE A . n A 1 96 SER 96 73 73 SER SER A . n A 1 97 ALA 97 74 74 ALA ALA A . n A 1 98 THR 98 75 75 THR THR A . n A 1 99 VAL 99 76 76 VAL VAL A . n A 1 100 ARG 100 77 77 ARG ARG A . n A 1 101 SER 101 78 78 SER SER A . n A 1 102 VAL 102 79 79 VAL VAL A . n A 1 103 SER 103 80 80 SER SER A . n A 1 104 SER 104 81 81 SER SER A . n A 1 105 ASP 105 82 82 ASP ASP A . n A 1 106 TRP 106 83 83 TRP TRP A . n A 1 107 ARG 107 84 84 ARG ARG A . n A 1 108 GLY 108 85 85 GLY GLY A . n A 1 109 ILE 109 86 86 ILE ILE A . n A 1 110 ARG 110 87 87 ARG ARG A . n A 1 111 LEU 111 88 88 LEU LEU A . n A 1 112 HIS 112 89 89 HIS HIS A . n A 1 113 VAL 113 90 90 VAL VAL A . n A 1 114 PHE 114 91 91 PHE PHE A . n A 1 115 ASP 115 92 92 ASP ASP A . n A 1 116 VAL 116 93 93 VAL VAL A . n A 1 117 PRO 117 94 94 PRO PRO A . n A 1 118 LYS 118 95 95 LYS LYS A . n A 1 119 ALA 119 96 96 ALA ALA A . n A 1 120 GLN 120 97 97 GLN GLN A . n A 1 121 GLY 121 98 98 GLY GLY A . n A 1 122 ASN 122 99 99 ASN ASN A . n A 1 123 LEU 123 100 100 LEU LEU A . n A 1 124 TYR 124 101 101 TYR TYR A . n A 1 125 GLN 125 102 102 GLN GLN A . n A 1 126 ARG 126 103 103 ARG ARG A . n A 1 127 LEU 127 104 104 LEU LEU A . n A 1 128 ALA 128 105 105 ALA ALA A . n A 1 129 VAL 129 106 106 VAL VAL A . n A 1 130 ALA 130 107 107 ALA ALA A . n A 1 131 THR 131 108 108 THR THR A . n A 1 132 GLN 132 109 109 GLN GLN A . n A 1 133 TRP 133 110 110 TRP TRP A . n A 1 134 LEU 134 111 111 LEU LEU A . n A 1 135 LYS 135 112 112 LYS LYS A . n A 1 136 THR 136 113 113 THR THR A . n A 1 137 HIS 137 114 114 HIS HIS A . n A 1 138 PRO 138 115 115 PRO PRO A . n A 1 139 ASN 139 116 116 ASN ASN A . n A 1 140 ALA 140 117 117 ALA ALA A . n A 1 141 PRO 141 118 118 PRO PRO A . n A 1 142 ILE 142 119 119 ILE ILE A . n A 1 143 THR 143 120 120 THR THR A . n A 1 144 ILE 144 121 121 ILE ILE A . n A 1 145 ILE 145 122 122 ILE ILE A . n A 1 146 PRO 146 123 123 PRO PRO A . n A 1 147 GLN 147 124 124 GLN GLN A . n A 1 148 ILE 148 125 125 ILE ILE A . n A 1 149 LYS 149 126 126 LYS LYS A . n A 1 150 VAL 150 127 127 VAL VAL A . n A 1 151 ARG 151 128 128 ARG ARG A . n A 1 152 ASP 152 129 129 ASP ASP A . n A 1 153 ARG 153 130 130 ARG ARG A . n A 1 154 ARG 154 131 131 ARG ARG A . n A 1 155 HIS 155 132 132 HIS HIS A . n A 1 156 ALA 156 133 133 ALA ALA A . n A 1 157 MET 157 134 134 MET MET A . n A 1 158 ASP 158 135 135 ASP ASP A . n A 1 159 PHE 159 136 136 PHE PHE A . n A 1 160 LEU 160 137 137 LEU LEU A . n A 1 161 LYS 161 138 138 LYS LYS A . n A 1 162 GLN 162 139 139 GLN GLN A . n A 1 163 ILE 163 140 140 ILE ILE A . n A 1 164 GLU 164 141 141 GLU GLU A . n A 1 165 ALA 165 142 142 ALA ALA A . n A 1 166 GLN 166 143 143 GLN GLN A . n A 1 167 GLY 167 144 144 GLY GLY A . n A 1 168 GLY 168 145 145 GLY GLY A . n A 1 169 GLU 169 146 146 GLU GLU A . n A 1 170 GLY 170 147 147 GLY GLY A . n A 1 171 VAL 171 148 148 VAL VAL A . n A 1 172 MET 172 149 149 MET MET A . n A 1 173 LEU 173 150 150 LEU LEU A . n A 1 174 ARG 174 151 151 ARG ARG A . n A 1 175 GLN 175 152 152 GLN GLN A . n A 1 176 PRO 176 153 153 PRO PRO A . n A 1 177 GLU 177 154 154 GLU GLU A . n A 1 178 SER 178 155 155 SER SER A . n A 1 179 ARG 179 156 156 ARG ARG A . n A 1 180 TYR 180 157 157 TYR TYR A . n A 1 181 SER 181 158 158 SER SER A . n A 1 182 GLY 182 159 159 GLY GLY A . n A 1 183 GLY 183 160 160 GLY GLY A . n A 1 184 ARG 184 161 161 ARG ARG A . n A 1 185 SER 185 162 162 SER SER A . n A 1 186 SER 186 163 163 SER SER A . n A 1 187 GLN 187 164 164 GLN GLN A . n A 1 188 LEU 188 165 165 LEU LEU A . n A 1 189 LEU 189 166 166 LEU LEU A . n A 1 190 LYS 190 167 167 LYS LYS A . n A 1 191 LEU 191 168 168 LEU LEU A . n A 1 192 LYS 192 169 169 LYS LYS A . n A 1 193 SER 193 170 170 SER SER A . n A 1 194 GLN 194 171 171 GLN GLN A . n A 1 195 TYR 195 172 172 TYR TYR A . n A 1 196 ASP 196 173 173 ASP ASP A . n A 1 197 ASP 197 174 174 ASP ASP A . n A 1 198 GLU 198 175 175 GLU GLU A . n A 1 199 CYS 199 176 176 CYS CYS A . n A 1 200 THR 200 177 177 THR THR A . n A 1 201 VAL 201 178 178 VAL VAL A . n A 1 202 THR 202 179 179 THR THR A . n A 1 203 ARG 203 180 180 ARG ARG A . n A 1 204 HIS 204 181 181 HIS HIS A . n A 1 205 TYR 205 182 182 TYR TYR A . n A 1 206 GLU 206 183 183 GLU GLU A . n A 1 207 GLY 207 184 184 GLY GLY A . n A 1 208 LYS 208 185 185 LYS LYS A . n A 1 209 GLY 209 186 186 GLY GLY A . n A 1 210 ARG 210 187 187 ARG ARG A . n A 1 211 ASN 211 188 188 ASN ASN A . n A 1 212 ALA 212 189 189 ALA ALA A . n A 1 213 GLY 213 190 190 GLY GLY A . n A 1 214 ARG 214 191 191 ARG ARG A . n A 1 215 LEU 215 192 192 LEU LEU A . n A 1 216 GLY 216 193 193 GLY GLY A . n A 1 217 ALA 217 194 194 ALA ALA A . n A 1 218 VAL 218 195 195 VAL VAL A . n A 1 219 GLY 219 196 196 GLY GLY A . n A 1 220 CYS 220 197 197 CYS CYS A . n A 1 221 LYS 221 198 198 LYS LYS A . n A 1 222 ASN 222 199 199 ASN ASN A . n A 1 223 ARG 223 200 200 ARG ARG A . n A 1 224 HIS 224 201 201 HIS HIS A . n A 1 225 GLY 225 202 202 GLY GLY A . n A 1 226 GLU 226 203 203 GLU GLU A . n A 1 227 PHE 227 204 204 PHE PHE A . n A 1 228 ARG 228 205 205 ARG ARG A . n A 1 229 ILE 229 206 206 ILE ILE A . n A 1 230 GLY 230 207 207 GLY GLY A . n A 1 231 SER 231 208 208 SER SER A . n A 1 232 GLY 232 209 209 GLY GLY A . n A 1 233 PHE 233 210 210 PHE PHE A . n A 1 234 LYS 234 211 211 LYS LYS A . n A 1 235 ASP 235 212 212 ASP ASP A . n A 1 236 LYS 236 213 213 LYS LYS A . n A 1 237 ASP 237 214 214 ASP ASP A . n A 1 238 ARG 238 215 215 ARG ARG A . n A 1 239 ASP 239 216 216 ASP ASP A . n A 1 240 ASN 240 217 217 ASN ASN A . n A 1 241 PRO 241 218 218 PRO PRO A . n A 1 242 PRO 242 219 219 PRO PRO A . n A 1 243 LYS 243 220 220 LYS LYS A . n A 1 244 ILE 244 221 221 ILE ILE A . n A 1 245 GLY 245 222 222 GLY GLY A . n A 1 246 THR 246 223 223 THR THR A . n A 1 247 LEU 247 224 224 LEU LEU A . n A 1 248 ILE 248 225 225 ILE ILE A . n A 1 249 THR 249 226 226 THR THR A . n A 1 250 TYR 250 227 227 TYR TYR A . n A 1 251 ARG 251 228 228 ARG ARG A . n A 1 252 TYR 252 229 229 TYR TYR A . n A 1 253 ARG 253 230 230 ARG ARG A . n A 1 254 GLY 254 231 231 GLY GLY A . n A 1 255 PHE 255 232 232 PHE PHE A . n A 1 256 THR 256 233 233 THR THR A . n A 1 257 ARG 257 234 234 ARG ARG A . n A 1 258 LYS 258 235 235 LYS LYS A . n A 1 259 GLY 259 236 236 GLY GLY A . n A 1 260 THR 260 237 237 THR THR A . n A 1 261 PRO 261 238 238 PRO PRO A . n A 1 262 LYS 262 239 239 LYS LYS A . n A 1 263 PHE 263 240 240 PHE PHE A . n A 1 264 ALA 264 241 241 ALA ALA A . n A 1 265 THR 265 242 242 THR THR A . n A 1 266 PHE 266 243 243 PHE PHE A . n A 1 267 VAL 267 244 244 VAL VAL A . n A 1 268 ARG 268 245 245 ARG ARG A . n A 1 269 VAL 269 246 246 VAL VAL A . n A 1 270 ARG 270 247 247 ARG ARG A . n A 1 271 THR 271 248 ? ? ? A . n A 1 272 ASP 272 249 ? ? ? A . n A 1 273 ARG 273 250 ? ? ? A . n A 1 274 HIS 274 251 ? ? ? A . n A 1 275 HIS 275 252 ? ? ? A . n A 1 276 HIS 276 253 ? ? ? A . n A 1 277 HIS 277 254 ? ? ? A . n A 1 278 HIS 278 255 ? ? ? A . n A 1 279 HIS 279 256 ? ? ? A . n B 2 1 DT 1 -2 ? ? ? B . n B 2 2 DT 2 -1 ? ? ? B . n B 2 3 DC 3 0 ? ? ? B . n B 2 4 DC 4 1 1 DC DC B . n B 2 5 DG 5 2 2 DG DG B . n B 2 6 DA 6 3 3 DA DA B . n B 2 7 DT 7 4 4 DT DT B . n B 2 8 DA 8 5 5 DA DA B . n B 2 9 DG 9 6 6 DG DG B . n B 2 10 DT 10 7 ? ? ? B . n B 2 11 DG 11 8 ? ? ? B . n B 2 12 DG 12 9 ? ? ? B . n B 2 13 DG 13 10 ? ? ? B . n B 2 14 DG 14 11 ? ? ? B . n B 2 15 DT 15 12 ? ? ? B . n B 2 16 DC 16 13 ? ? ? B . n B 2 17 DG 17 14 ? ? ? B . n B 2 18 DC 18 15 ? ? ? B . n B 2 19 DA 19 16 ? ? ? B . n B 2 20 DA 20 17 ? ? ? B . n B 2 21 DT 21 18 ? ? ? B . n C 3 1 DA 1 -11 ? ? ? C . n C 3 2 DT 2 -10 ? ? ? C . n C 3 3 DT 3 -9 ? ? ? C . n C 3 4 DG 4 -8 ? ? ? C . n C 3 5 DC 5 -7 ? ? ? C . n C 3 6 DG 6 -6 ? ? ? C . n C 3 7 DA 7 -5 ? ? ? C . n C 3 8 DC 8 -4 ? ? ? C . n C 3 9 DC 9 -3 ? ? ? C . n C 3 10 DC 10 -2 ? ? ? C . n C 3 11 DC 11 -1 ? ? ? C . n C 3 12 DA 12 0 ? ? ? C . n C 3 13 DC 13 1 1 DC DC C . n C 3 14 DT 14 2 2 DT DT C . n C 3 15 DA 15 3 3 DA DA C . n C 3 16 DT 16 4 4 DT DT C . n C 3 17 DC 17 5 5 DC DC C . n C 3 18 DG 18 6 6 DG DG C . n C 3 19 DG 19 7 ? ? ? C . n C 3 20 DA 20 8 ? ? ? C . n C 3 21 DA 21 9 ? ? ? C . n # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id AMP _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id AMP _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 AMP 1 301 301 AMP AMP A . E 5 SCN 1 302 303 SCN SCN A . F 5 SCN 1 303 304 SCN SCN A . G 5 SCN 1 304 305 SCN SCN A . H 6 HOH 1 401 84 HOH HOH A . H 6 HOH 2 402 50 HOH HOH A . H 6 HOH 3 403 25 HOH HOH A . H 6 HOH 4 404 70 HOH HOH A . H 6 HOH 5 405 1 HOH HOH A . H 6 HOH 6 406 29 HOH HOH A . H 6 HOH 7 407 13 HOH HOH A . H 6 HOH 8 408 3 HOH HOH A . H 6 HOH 9 409 2 HOH HOH A . H 6 HOH 10 410 39 HOH HOH A . H 6 HOH 11 411 37 HOH HOH A . H 6 HOH 12 412 5 HOH HOH A . H 6 HOH 13 413 10 HOH HOH A . H 6 HOH 14 414 38 HOH HOH A . H 6 HOH 15 415 31 HOH HOH A . H 6 HOH 16 416 7 HOH HOH A . H 6 HOH 17 417 26 HOH HOH A . H 6 HOH 18 418 21 HOH HOH A . H 6 HOH 19 419 11 HOH HOH A . H 6 HOH 20 420 19 HOH HOH A . H 6 HOH 21 421 73 HOH HOH A . H 6 HOH 22 422 34 HOH HOH A . H 6 HOH 23 423 52 HOH HOH A . H 6 HOH 24 424 9 HOH HOH A . H 6 HOH 25 425 6 HOH HOH A . H 6 HOH 26 426 27 HOH HOH A . H 6 HOH 27 427 66 HOH HOH A . H 6 HOH 28 428 8 HOH HOH A . H 6 HOH 29 429 54 HOH HOH A . H 6 HOH 30 430 32 HOH HOH A . H 6 HOH 31 431 42 HOH HOH A . H 6 HOH 32 432 62 HOH HOH A . H 6 HOH 33 433 35 HOH HOH A . H 6 HOH 34 434 24 HOH HOH A . H 6 HOH 35 435 67 HOH HOH A . H 6 HOH 36 436 22 HOH HOH A . H 6 HOH 37 437 23 HOH HOH A . H 6 HOH 38 438 64 HOH HOH A . H 6 HOH 39 439 69 HOH HOH A . I 6 HOH 1 101 55 HOH HOH B . I 6 HOH 2 102 78 HOH HOH B . J 6 HOH 1 101 40 HOH HOH C . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.20.1_4487 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 8U6X _cell.details ? _cell.formula_units_Z ? _cell.length_a 39.398 _cell.length_a_esd ? _cell.length_b 167.680 _cell.length_b_esd ? _cell.length_c 51.159 _cell.length_c_esd ? _cell.volume 337969.483 _cell.volume_esd ? _cell.Z_PDB 4 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8U6X _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall 'P 2 2ab' _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8U6X _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 3.0 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 59.1 _exptl_crystal.description 'small rods/ plates' _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 8.0 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.5 M potassium thiocyanate, 0.1 M Bis Tris Propane pH 8.0' _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 291.15 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2023-07-23 _diffrn_detector.pdbx_frequency ? _diffrn_detector.id ? _diffrn_detector.number_of_axes ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.953724 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'AUSTRALIAN SYNCHROTRON BEAMLINE MX2' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.953724 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline MX2 _diffrn_source.pdbx_synchrotron_site 'Australian Synchrotron' # _reflns.B_iso_Wilson_estimate 53.06 _reflns.entry_id 8U6X _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.44 _reflns.d_resolution_low 48.93 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 13286 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.86 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 8.7 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 11.88 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.1144 _reflns.pdbx_Rpim_I_all 0.03774 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.997 _reflns.pdbx_CC_star 0.999 _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs 0.1076 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 2.44 _reflns_shell.d_res_low 2.527 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 1.64 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 1269 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 8.8 _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all 1.146 _reflns_shell.pdbx_Rpim_I_all 0.3757 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.694 _reflns_shell.pdbx_CC_star 0.905 _reflns_shell.pdbx_R_split ? _reflns_shell.percent_possible_all 99.61 _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 1.08 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 61.64 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 8U6X _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.44 _refine.ls_d_res_low 48.93 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 13283 _refine.ls_number_reflns_R_free 1329 _refine.ls_number_reflns_R_work 11954 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.79 _refine.ls_percent_reflns_R_free 10.01 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2346 _refine.ls_R_factor_R_free 0.2795 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2295 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.34 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'GeoStd + Monomer Library + CDL v1.2' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1000 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 31.9417 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.3919 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 2.44 _refine_hist.d_res_low 48.93 _refine_hist.number_atoms_solvent 42 _refine_hist.number_atoms_total 2295 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 1976 _refine_hist.pdbx_number_atoms_nucleic_acid 246 _refine_hist.pdbx_number_atoms_ligand 31 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.0027 ? 2328 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 0.5136 ? 3180 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.0406 ? 326 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.0034 ? 372 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 18.1688 ? 403 ? f_dihedral_angle_d ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free _refine_ls_shell.R_factor_R_free 'X-RAY DIFFRACTION' 2.44 2.54 . . 140 1265 98.80 . . . . 0.3373 . . . . . . . . . . . 0.3815 'X-RAY DIFFRACTION' 2.54 2.65 . . 146 1302 99.72 . . . . 0.2928 . . . . . . . . . . . 0.3575 'X-RAY DIFFRACTION' 2.65 2.79 . . 144 1298 100.00 . . . . 0.2750 . . . . . . . . . . . 0.3837 'X-RAY DIFFRACTION' 2.79 2.97 . . 145 1304 100.00 . . . . 0.2752 . . . . . . . . . . . 0.3259 'X-RAY DIFFRACTION' 2.97 3.19 . . 148 1329 99.93 . . . . 0.2941 . . . . . . . . . . . 0.3543 'X-RAY DIFFRACTION' 3.20 3.52 . . 145 1316 99.86 . . . . 0.2284 . . . . . . . . . . . 0.3435 'X-RAY DIFFRACTION' 3.52 4.03 . . 149 1338 99.93 . . . . 0.2235 . . . . . . . . . . . 0.2735 'X-RAY DIFFRACTION' 4.03 5.07 . . 150 1356 100.00 . . . . 0.1780 . . . . . . . . . . . 0.1918 'X-RAY DIFFRACTION' 5.07 48.93 . . 162 1446 99.81 . . . . 0.2138 . . . . . . . . . . . 0.2516 # _struct.entry_id 8U6X _struct.title 'ATP-dependent DNA ligase Lig E from Neisseria gonorrhoeae' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8U6X _struct_keywords.text 'enzyme-adenylate, Lig E, LIGASE, LIGASE-DNA complex' _struct_keywords.pdbx_keywords LIGASE/DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 5 ? G N N 5 ? H N N 6 ? I N N 6 ? J N N 6 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP D6HB39_NEIGO D6HB39 ? 1 ;ADLMLAQEYKGQDIAGWAMSEKLDGVRAYWDGKHLISRQGYAFTPPKGFTAQFPPYPLDGELYSGRGQFEQISATVRSVS SDWRGIRLHVFDVPKAQGNLYQRLAVATQWLKTHPNAPITIIPQIKVRDRRHAMDFLKQIEAQGGEGVMLRQPESRYSGG RSSQLLKLKSQYDDECTVTRHYEGKGRNAGRLGAVGCKNRHGEFRIGSGFKDKDRDNPPKIGTLITYRYRGFTRKGTPKF ATFVRVRTDR ; 25 2 PDB 8U6X 8U6X ? 2 ? 1 3 PDB 8U6X 8U6X ? 3 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 8U6X A 24 ? 273 ? D6HB39 25 ? 274 ? 1 250 2 2 8U6X B 1 ? 21 ? 8U6X -2 ? 18 ? -2 18 3 3 8U6X C 1 ? 21 ? 8U6X -11 ? 9 ? -11 9 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 8U6X MET A 1 ? UNP D6HB39 ? ? 'initiating methionine' -22 1 1 8U6X SER A 2 ? UNP D6HB39 ? ? 'expression tag' -21 2 1 8U6X TYR A 3 ? UNP D6HB39 ? ? 'expression tag' -20 3 1 8U6X TYR A 4 ? UNP D6HB39 ? ? 'expression tag' -19 4 1 8U6X HIS A 5 ? UNP D6HB39 ? ? 'expression tag' -18 5 1 8U6X HIS A 6 ? UNP D6HB39 ? ? 'expression tag' -17 6 1 8U6X HIS A 7 ? UNP D6HB39 ? ? 'expression tag' -16 7 1 8U6X HIS A 8 ? UNP D6HB39 ? ? 'expression tag' -15 8 1 8U6X HIS A 9 ? UNP D6HB39 ? ? 'expression tag' -14 9 1 8U6X HIS A 10 ? UNP D6HB39 ? ? 'expression tag' -13 10 1 8U6X LEU A 11 ? UNP D6HB39 ? ? 'expression tag' -12 11 1 8U6X GLU A 12 ? UNP D6HB39 ? ? 'expression tag' -11 12 1 8U6X SER A 13 ? UNP D6HB39 ? ? 'expression tag' -10 13 1 8U6X THR A 14 ? UNP D6HB39 ? ? 'expression tag' -9 14 1 8U6X SER A 15 ? UNP D6HB39 ? ? 'expression tag' -8 15 1 8U6X LEU A 16 ? UNP D6HB39 ? ? 'expression tag' -7 16 1 8U6X TYR A 17 ? UNP D6HB39 ? ? 'expression tag' -6 17 1 8U6X LYS A 18 ? UNP D6HB39 ? ? 'expression tag' -5 18 1 8U6X LYS A 19 ? UNP D6HB39 ? ? 'expression tag' -4 19 1 8U6X ALA A 20 ? UNP D6HB39 ? ? 'expression tag' -3 20 1 8U6X GLY A 21 ? UNP D6HB39 ? ? 'expression tag' -2 21 1 8U6X LEU A 22 ? UNP D6HB39 ? ? 'expression tag' -1 22 1 8U6X MET A 23 ? UNP D6HB39 ? ? 'expression tag' 0 23 1 8U6X HIS A 274 ? UNP D6HB39 ? ? 'expression tag' 251 24 1 8U6X HIS A 275 ? UNP D6HB39 ? ? 'expression tag' 252 25 1 8U6X HIS A 276 ? UNP D6HB39 ? ? 'expression tag' 253 26 1 8U6X HIS A 277 ? UNP D6HB39 ? ? 'expression tag' 254 27 1 8U6X HIS A 278 ? UNP D6HB39 ? ? 'expression tag' 255 28 1 8U6X HIS A 279 ? UNP D6HB39 ? ? 'expression tag' 256 29 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 GLN A 91 ? ARG A 100 ? GLN A 68 ARG A 77 1 ? 10 HELX_P HELX_P2 AA2 ASN A 122 ? HIS A 137 ? ASN A 99 HIS A 114 1 ? 16 HELX_P HELX_P3 AA3 ASP A 152 ? GLN A 166 ? ASP A 129 GLN A 143 1 ? 15 HELX_P HELX_P4 AA4 LYS A 208 ? ALA A 212 ? LYS A 185 ALA A 189 5 ? 5 HELX_P HELX_P5 AA5 LYS A 234 ? ASN A 240 ? LYS A 211 ASN A 217 1 ? 7 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 199 SG ? ? ? 1_555 A CYS 220 SG ? ? A CYS 176 A CYS 197 1_555 ? ? ? ? ? ? ? 2.027 ? ? covale1 covale one ? A LYS 45 NZ ? ? ? 1_555 D AMP . P ? ? A LYS 22 A AMP 301 1_555 ? ? ? ? ? ? ? 1.653 ? ? hydrog1 hydrog ? ? B DC 4 O2 ? ? ? 1_555 C DG 18 N2 ? ? B DC 1 C DG 6 1_555 ? ? ? ? ? ? 'DC-DG PAIR' ? ? ? hydrog2 hydrog ? ? B DG 5 N1 ? ? ? 1_555 C DC 17 O2 ? ? B DG 2 C DC 5 1_555 ? ? ? ? ? ? 'DG-DC PAIR' ? ? ? hydrog3 hydrog ? ? B DA 6 N1 ? ? ? 1_555 C DT 16 N3 ? ? B DA 3 C DT 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B DA 6 N6 ? ? ? 1_555 C DT 16 O4 ? ? B DA 3 C DT 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? B DT 7 N3 ? ? ? 1_555 C DA 15 N1 ? ? B DT 4 C DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B DT 7 O4 ? ? ? 1_555 C DA 15 N6 ? ? B DT 4 C DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B DA 8 N1 ? ? ? 1_555 C DT 14 N3 ? ? B DA 5 C DT 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? B DA 8 N6 ? ? ? 1_555 C DT 14 O4 ? ? B DA 5 C DT 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B DG 9 N1 ? ? ? 1_555 C DC 13 O2 ? ? B DG 6 C DC 1 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog10 hydrog ? ? B DG 9 N2 ? ? ? 1_555 C DC 13 N3 ? ? B DG 6 C DC 1 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? hydrog ? ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 AMP D . ? LYS A 45 ? AMP A 301 ? 1_555 LYS A 22 ? 1_555 P NZ LYS 13 AMP AMPylation 'Nucleotide monophosphate' 2 CYS A 199 ? CYS A 220 ? CYS A 176 ? 1_555 CYS A 197 ? 1_555 SG SG . . . None 'Disulfide bridge' # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 5 ? AA2 ? 5 ? AA3 ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA1 4 5 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel AA2 4 5 ? parallel AA3 1 2 ? anti-parallel AA3 2 3 ? anti-parallel AA3 3 4 ? anti-parallel AA3 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 MET A 27 ? GLU A 31 ? MET A 4 GLU A 8 AA1 2 GLY A 183 ? LEU A 191 ? GLY A 160 LEU A 168 AA1 3 VAL A 171 ? ARG A 174 ? VAL A 148 ARG A 151 AA1 4 ALA A 41 ? GLU A 44 ? ALA A 18 GLU A 21 AA1 5 ILE A 148 ? LYS A 149 ? ILE A 125 LYS A 126 AA2 1 LEU A 58 ? ILE A 59 ? LEU A 35 ILE A 36 AA2 2 VAL A 49 ? TRP A 53 ? VAL A 26 TRP A 30 AA2 3 LEU A 81 ? TYR A 86 ? LEU A 58 TYR A 63 AA2 4 ARG A 110 ? ASP A 115 ? ARG A 87 ASP A 92 AA2 5 ILE A 142 ? ILE A 144 ? ILE A 119 ILE A 121 AA3 1 GLY A 225 ? ILE A 229 ? GLY A 202 ILE A 206 AA3 2 LEU A 215 ? ASN A 222 ? LEU A 192 ASN A 199 AA3 3 TYR A 195 ? GLU A 206 ? TYR A 172 GLU A 183 AA3 4 LEU A 247 ? TYR A 252 ? LEU A 224 TYR A 229 AA3 5 THR A 265 ? VAL A 269 ? THR A 242 VAL A 246 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N GLN A 30 ? N GLN A 7 O LYS A 190 ? O LYS A 167 AA1 2 3 O LEU A 191 ? O LEU A 168 N VAL A 171 ? N VAL A 148 AA1 3 4 O MET A 172 ? O MET A 149 N SER A 43 ? N SER A 20 AA1 4 5 N MET A 42 ? N MET A 19 O ILE A 148 ? O ILE A 125 AA2 1 2 O ILE A 59 ? O ILE A 36 N TYR A 52 ? N TYR A 29 AA2 2 3 N TRP A 53 ? N TRP A 30 O LEU A 81 ? O LEU A 58 AA2 3 4 N TYR A 86 ? N TYR A 63 O ARG A 110 ? O ARG A 87 AA2 4 5 N VAL A 113 ? N VAL A 90 O THR A 143 ? O THR A 120 AA3 1 2 O PHE A 227 ? O PHE A 204 N CYS A 220 ? N CYS A 197 AA3 2 3 O GLY A 219 ? O GLY A 196 N THR A 202 ? N THR A 179 AA3 3 4 N TYR A 195 ? N TYR A 172 O TYR A 252 ? O TYR A 229 AA3 4 5 N ARG A 251 ? N ARG A 228 O THR A 265 ? O THR A 242 # _pdbx_entry_details.entry_id 8U6X _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 H22 B DG 6 ? ? O2 C DC 1 ? ? 1.38 2 1 NZ A LYS 22 ? ? O1P A AMP 301 ? ? 2.09 3 1 N2 B DG 6 ? ? O2 C DC 1 ? ? 2.19 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 33 ? ? -152.76 -34.20 2 1 SER A 64 ? ? -129.78 -65.75 3 1 SER A 80 ? ? -145.30 23.72 4 1 ASN A 199 ? ? -159.57 -153.44 5 1 LYS A 211 ? ? -66.71 -172.28 6 1 VAL A 244 ? ? -113.76 -79.53 # loop_ _space_group_symop.id _space_group_symop.operation_xyz 1 x,y,z 2 x+1/2,-y+1/2,-z 3 -x+1/2,y+1/2,-z 4 -x,-y,z # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET -22 ? A MET 1 2 1 Y 1 A SER -21 ? A SER 2 3 1 Y 1 A TYR -20 ? A TYR 3 4 1 Y 1 A TYR -19 ? A TYR 4 5 1 Y 1 A HIS -18 ? A HIS 5 6 1 Y 1 A HIS -17 ? A HIS 6 7 1 Y 1 A HIS -16 ? A HIS 7 8 1 Y 1 A HIS -15 ? A HIS 8 9 1 Y 1 A HIS -14 ? A HIS 9 10 1 Y 1 A HIS -13 ? A HIS 10 11 1 Y 1 A LEU -12 ? A LEU 11 12 1 Y 1 A GLU -11 ? A GLU 12 13 1 Y 1 A SER -10 ? A SER 13 14 1 Y 1 A THR -9 ? A THR 14 15 1 Y 1 A SER -8 ? A SER 15 16 1 Y 1 A LEU -7 ? A LEU 16 17 1 Y 1 A TYR -6 ? A TYR 17 18 1 Y 1 A LYS -5 ? A LYS 18 19 1 Y 1 A LYS -4 ? A LYS 19 20 1 Y 1 A ALA -3 ? A ALA 20 21 1 Y 1 A GLY -2 ? A GLY 21 22 1 Y 1 A LEU -1 ? A LEU 22 23 1 Y 1 A MET 0 ? A MET 23 24 1 Y 1 A THR 248 ? A THR 271 25 1 Y 1 A ASP 249 ? A ASP 272 26 1 Y 1 A ARG 250 ? A ARG 273 27 1 Y 1 A HIS 251 ? A HIS 274 28 1 Y 1 A HIS 252 ? A HIS 275 29 1 Y 1 A HIS 253 ? A HIS 276 30 1 Y 1 A HIS 254 ? A HIS 277 31 1 Y 1 A HIS 255 ? A HIS 278 32 1 Y 1 A HIS 256 ? A HIS 279 33 1 Y 1 B DT -2 ? B DT 1 34 1 Y 1 B DT -1 ? B DT 2 35 1 Y 1 B DC 0 ? B DC 3 36 1 Y 1 B DT 7 ? B DT 10 37 1 Y 1 B DG 8 ? B DG 11 38 1 Y 1 B DG 9 ? B DG 12 39 1 Y 1 B DG 10 ? B DG 13 40 1 Y 1 B DG 11 ? B DG 14 41 1 Y 1 B DT 12 ? B DT 15 42 1 Y 1 B DC 13 ? B DC 16 43 1 Y 1 B DG 14 ? B DG 17 44 1 Y 1 B DC 15 ? B DC 18 45 1 Y 1 B DA 16 ? B DA 19 46 1 Y 1 B DA 17 ? B DA 20 47 1 Y 1 B DT 18 ? B DT 21 48 1 Y 1 C DA -11 ? C DA 1 49 1 Y 1 C DT -10 ? C DT 2 50 1 Y 1 C DT -9 ? C DT 3 51 1 Y 1 C DG -8 ? C DG 4 52 1 Y 1 C DC -7 ? C DC 5 53 1 Y 1 C DG -6 ? C DG 6 54 1 Y 1 C DA -5 ? C DA 7 55 1 Y 1 C DC -4 ? C DC 8 56 1 Y 1 C DC -3 ? C DC 9 57 1 Y 1 C DC -2 ? C DC 10 58 1 Y 1 C DC -1 ? C DC 11 59 1 Y 1 C DA 0 ? C DA 12 60 1 Y 1 C DG 7 ? C DG 19 61 1 Y 1 C DA 8 ? C DA 20 62 1 Y 1 C DA 9 ? C DA 21 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 AMP P P N N 14 AMP O1P O N N 15 AMP O2P O N N 16 AMP O3P O N N 17 AMP "O5'" O N N 18 AMP "C5'" C N N 19 AMP "C4'" C N R 20 AMP "O4'" O N N 21 AMP "C3'" C N S 22 AMP "O3'" O N N 23 AMP "C2'" C N R 24 AMP "O2'" O N N 25 AMP "C1'" C N R 26 AMP N9 N Y N 27 AMP C8 C Y N 28 AMP N7 N Y N 29 AMP C5 C Y N 30 AMP C6 C Y N 31 AMP N6 N N N 32 AMP N1 N Y N 33 AMP C2 C Y N 34 AMP N3 N Y N 35 AMP C4 C Y N 36 AMP HOP2 H N N 37 AMP HOP3 H N N 38 AMP "H5'1" H N N 39 AMP "H5'2" H N N 40 AMP "H4'" H N N 41 AMP "H3'" H N N 42 AMP "HO3'" H N N 43 AMP "H2'" H N N 44 AMP "HO2'" H N N 45 AMP "H1'" H N N 46 AMP H8 H N N 47 AMP HN61 H N N 48 AMP HN62 H N N 49 AMP H2 H N N 50 ARG N N N N 51 ARG CA C N S 52 ARG C C N N 53 ARG O O N N 54 ARG CB C N N 55 ARG CG C N N 56 ARG CD C N N 57 ARG NE N N N 58 ARG CZ C N N 59 ARG NH1 N N N 60 ARG NH2 N N N 61 ARG OXT O N N 62 ARG H H N N 63 ARG H2 H N N 64 ARG HA H N N 65 ARG HB2 H N N 66 ARG HB3 H N N 67 ARG HG2 H N N 68 ARG HG3 H N N 69 ARG HD2 H N N 70 ARG HD3 H N N 71 ARG HE H N N 72 ARG HH11 H N N 73 ARG HH12 H N N 74 ARG HH21 H N N 75 ARG HH22 H N N 76 ARG HXT H N N 77 ASN N N N N 78 ASN CA C N S 79 ASN C C N N 80 ASN O O N N 81 ASN CB C N N 82 ASN CG C N N 83 ASN OD1 O N N 84 ASN ND2 N N N 85 ASN OXT O N N 86 ASN H H N N 87 ASN H2 H N N 88 ASN HA H N N 89 ASN HB2 H N N 90 ASN HB3 H N N 91 ASN HD21 H N N 92 ASN HD22 H N N 93 ASN HXT H N N 94 ASP N N N N 95 ASP CA C N S 96 ASP C C N N 97 ASP O O N N 98 ASP CB C N N 99 ASP CG C N N 100 ASP OD1 O N N 101 ASP OD2 O N N 102 ASP OXT O N N 103 ASP H H N N 104 ASP H2 H N N 105 ASP HA H N N 106 ASP HB2 H N N 107 ASP HB3 H N N 108 ASP HD2 H N N 109 ASP HXT H N N 110 CYS N N N N 111 CYS CA C N R 112 CYS C C N N 113 CYS O O N N 114 CYS CB C N N 115 CYS SG S N N 116 CYS OXT O N N 117 CYS H H N N 118 CYS H2 H N N 119 CYS HA H N N 120 CYS HB2 H N N 121 CYS HB3 H N N 122 CYS HG H N N 123 CYS HXT H N N 124 DA OP3 O N N 125 DA P P N N 126 DA OP1 O N N 127 DA OP2 O N N 128 DA "O5'" O N N 129 DA "C5'" C N N 130 DA "C4'" C N R 131 DA "O4'" O N N 132 DA "C3'" C N S 133 DA "O3'" O N N 134 DA "C2'" C N N 135 DA "C1'" C N R 136 DA N9 N Y N 137 DA C8 C Y N 138 DA N7 N Y N 139 DA C5 C Y N 140 DA C6 C Y N 141 DA N6 N N N 142 DA N1 N Y N 143 DA C2 C Y N 144 DA N3 N Y N 145 DA C4 C Y N 146 DA HOP3 H N N 147 DA HOP2 H N N 148 DA "H5'" H N N 149 DA "H5''" H N N 150 DA "H4'" H N N 151 DA "H3'" H N N 152 DA "HO3'" H N N 153 DA "H2'" H N N 154 DA "H2''" H N N 155 DA "H1'" H N N 156 DA H8 H N N 157 DA H61 H N N 158 DA H62 H N N 159 DA H2 H N N 160 DC OP3 O N N 161 DC P P N N 162 DC OP1 O N N 163 DC OP2 O N N 164 DC "O5'" O N N 165 DC "C5'" C N N 166 DC "C4'" C N R 167 DC "O4'" O N N 168 DC "C3'" C N S 169 DC "O3'" O N N 170 DC "C2'" C N N 171 DC "C1'" C N R 172 DC N1 N N N 173 DC C2 C N N 174 DC O2 O N N 175 DC N3 N N N 176 DC C4 C N N 177 DC N4 N N N 178 DC C5 C N N 179 DC C6 C N N 180 DC HOP3 H N N 181 DC HOP2 H N N 182 DC "H5'" H N N 183 DC "H5''" H N N 184 DC "H4'" H N N 185 DC "H3'" H N N 186 DC "HO3'" H N N 187 DC "H2'" H N N 188 DC "H2''" H N N 189 DC "H1'" H N N 190 DC H41 H N N 191 DC H42 H N N 192 DC H5 H N N 193 DC H6 H N N 194 DG OP3 O N N 195 DG P P N N 196 DG OP1 O N N 197 DG OP2 O N N 198 DG "O5'" O N N 199 DG "C5'" C N N 200 DG "C4'" C N R 201 DG "O4'" O N N 202 DG "C3'" C N S 203 DG "O3'" O N N 204 DG "C2'" C N N 205 DG "C1'" C N R 206 DG N9 N Y N 207 DG C8 C Y N 208 DG N7 N Y N 209 DG C5 C Y N 210 DG C6 C N N 211 DG O6 O N N 212 DG N1 N N N 213 DG C2 C N N 214 DG N2 N N N 215 DG N3 N N N 216 DG C4 C Y N 217 DG HOP3 H N N 218 DG HOP2 H N N 219 DG "H5'" H N N 220 DG "H5''" H N N 221 DG "H4'" H N N 222 DG "H3'" H N N 223 DG "HO3'" H N N 224 DG "H2'" H N N 225 DG "H2''" H N N 226 DG "H1'" H N N 227 DG H8 H N N 228 DG H1 H N N 229 DG H21 H N N 230 DG H22 H N N 231 DT OP3 O N N 232 DT P P N N 233 DT OP1 O N N 234 DT OP2 O N N 235 DT "O5'" O N N 236 DT "C5'" C N N 237 DT "C4'" C N R 238 DT "O4'" O N N 239 DT "C3'" C N S 240 DT "O3'" O N N 241 DT "C2'" C N N 242 DT "C1'" C N R 243 DT N1 N N N 244 DT C2 C N N 245 DT O2 O N N 246 DT N3 N N N 247 DT C4 C N N 248 DT O4 O N N 249 DT C5 C N N 250 DT C7 C N N 251 DT C6 C N N 252 DT HOP3 H N N 253 DT HOP2 H N N 254 DT "H5'" H N N 255 DT "H5''" H N N 256 DT "H4'" H N N 257 DT "H3'" H N N 258 DT "HO3'" H N N 259 DT "H2'" H N N 260 DT "H2''" H N N 261 DT "H1'" H N N 262 DT H3 H N N 263 DT H71 H N N 264 DT H72 H N N 265 DT H73 H N N 266 DT H6 H N N 267 GLN N N N N 268 GLN CA C N S 269 GLN C C N N 270 GLN O O N N 271 GLN CB C N N 272 GLN CG C N N 273 GLN CD C N N 274 GLN OE1 O N N 275 GLN NE2 N N N 276 GLN OXT O N N 277 GLN H H N N 278 GLN H2 H N N 279 GLN HA H N N 280 GLN HB2 H N N 281 GLN HB3 H N N 282 GLN HG2 H N N 283 GLN HG3 H N N 284 GLN HE21 H N N 285 GLN HE22 H N N 286 GLN HXT H N N 287 GLU N N N N 288 GLU CA C N S 289 GLU C C N N 290 GLU O O N N 291 GLU CB C N N 292 GLU CG C N N 293 GLU CD C N N 294 GLU OE1 O N N 295 GLU OE2 O N N 296 GLU OXT O N N 297 GLU H H N N 298 GLU H2 H N N 299 GLU HA H N N 300 GLU HB2 H N N 301 GLU HB3 H N N 302 GLU HG2 H N N 303 GLU HG3 H N N 304 GLU HE2 H N N 305 GLU HXT H N N 306 GLY N N N N 307 GLY CA C N N 308 GLY C C N N 309 GLY O O N N 310 GLY OXT O N N 311 GLY H H N N 312 GLY H2 H N N 313 GLY HA2 H N N 314 GLY HA3 H N N 315 GLY HXT H N N 316 HIS N N N N 317 HIS CA C N S 318 HIS C C N N 319 HIS O O N N 320 HIS CB C N N 321 HIS CG C Y N 322 HIS ND1 N Y N 323 HIS CD2 C Y N 324 HIS CE1 C Y N 325 HIS NE2 N Y N 326 HIS OXT O N N 327 HIS H H N N 328 HIS H2 H N N 329 HIS HA H N N 330 HIS HB2 H N N 331 HIS HB3 H N N 332 HIS HD1 H N N 333 HIS HD2 H N N 334 HIS HE1 H N N 335 HIS HE2 H N N 336 HIS HXT H N N 337 HOH O O N N 338 HOH H1 H N N 339 HOH H2 H N N 340 ILE N N N N 341 ILE CA C N S 342 ILE C C N N 343 ILE O O N N 344 ILE CB C N S 345 ILE CG1 C N N 346 ILE CG2 C N N 347 ILE CD1 C N N 348 ILE OXT O N N 349 ILE H H N N 350 ILE H2 H N N 351 ILE HA H N N 352 ILE HB H N N 353 ILE HG12 H N N 354 ILE HG13 H N N 355 ILE HG21 H N N 356 ILE HG22 H N N 357 ILE HG23 H N N 358 ILE HD11 H N N 359 ILE HD12 H N N 360 ILE HD13 H N N 361 ILE HXT H N N 362 LEU N N N N 363 LEU CA C N S 364 LEU C C N N 365 LEU O O N N 366 LEU CB C N N 367 LEU CG C N N 368 LEU CD1 C N N 369 LEU CD2 C N N 370 LEU OXT O N N 371 LEU H H N N 372 LEU H2 H N N 373 LEU HA H N N 374 LEU HB2 H N N 375 LEU HB3 H N N 376 LEU HG H N N 377 LEU HD11 H N N 378 LEU HD12 H N N 379 LEU HD13 H N N 380 LEU HD21 H N N 381 LEU HD22 H N N 382 LEU HD23 H N N 383 LEU HXT H N N 384 LYS N N N N 385 LYS CA C N S 386 LYS C C N N 387 LYS O O N N 388 LYS CB C N N 389 LYS CG C N N 390 LYS CD C N N 391 LYS CE C N N 392 LYS NZ N N N 393 LYS OXT O N N 394 LYS H H N N 395 LYS H2 H N N 396 LYS HA H N N 397 LYS HB2 H N N 398 LYS HB3 H N N 399 LYS HG2 H N N 400 LYS HG3 H N N 401 LYS HD2 H N N 402 LYS HD3 H N N 403 LYS HE2 H N N 404 LYS HE3 H N N 405 LYS HZ1 H N N 406 LYS HZ2 H N N 407 LYS HZ3 H N N 408 LYS HXT H N N 409 MET N N N N 410 MET CA C N S 411 MET C C N N 412 MET O O N N 413 MET CB C N N 414 MET CG C N N 415 MET SD S N N 416 MET CE C N N 417 MET OXT O N N 418 MET H H N N 419 MET H2 H N N 420 MET HA H N N 421 MET HB2 H N N 422 MET HB3 H N N 423 MET HG2 H N N 424 MET HG3 H N N 425 MET HE1 H N N 426 MET HE2 H N N 427 MET HE3 H N N 428 MET HXT H N N 429 PHE N N N N 430 PHE CA C N S 431 PHE C C N N 432 PHE O O N N 433 PHE CB C N N 434 PHE CG C Y N 435 PHE CD1 C Y N 436 PHE CD2 C Y N 437 PHE CE1 C Y N 438 PHE CE2 C Y N 439 PHE CZ C Y N 440 PHE OXT O N N 441 PHE H H N N 442 PHE H2 H N N 443 PHE HA H N N 444 PHE HB2 H N N 445 PHE HB3 H N N 446 PHE HD1 H N N 447 PHE HD2 H N N 448 PHE HE1 H N N 449 PHE HE2 H N N 450 PHE HZ H N N 451 PHE HXT H N N 452 PRO N N N N 453 PRO CA C N S 454 PRO C C N N 455 PRO O O N N 456 PRO CB C N N 457 PRO CG C N N 458 PRO CD C N N 459 PRO OXT O N N 460 PRO H H N N 461 PRO HA H N N 462 PRO HB2 H N N 463 PRO HB3 H N N 464 PRO HG2 H N N 465 PRO HG3 H N N 466 PRO HD2 H N N 467 PRO HD3 H N N 468 PRO HXT H N N 469 SCN S S N N 470 SCN C C N N 471 SCN N N N N 472 SER N N N N 473 SER CA C N S 474 SER C C N N 475 SER O O N N 476 SER CB C N N 477 SER OG O N N 478 SER OXT O N N 479 SER H H N N 480 SER H2 H N N 481 SER HA H N N 482 SER HB2 H N N 483 SER HB3 H N N 484 SER HG H N N 485 SER HXT H N N 486 THR N N N N 487 THR CA C N S 488 THR C C N N 489 THR O O N N 490 THR CB C N R 491 THR OG1 O N N 492 THR CG2 C N N 493 THR OXT O N N 494 THR H H N N 495 THR H2 H N N 496 THR HA H N N 497 THR HB H N N 498 THR HG1 H N N 499 THR HG21 H N N 500 THR HG22 H N N 501 THR HG23 H N N 502 THR HXT H N N 503 TRP N N N N 504 TRP CA C N S 505 TRP C C N N 506 TRP O O N N 507 TRP CB C N N 508 TRP CG C Y N 509 TRP CD1 C Y N 510 TRP CD2 C Y N 511 TRP NE1 N Y N 512 TRP CE2 C Y N 513 TRP CE3 C Y N 514 TRP CZ2 C Y N 515 TRP CZ3 C Y N 516 TRP CH2 C Y N 517 TRP OXT O N N 518 TRP H H N N 519 TRP H2 H N N 520 TRP HA H N N 521 TRP HB2 H N N 522 TRP HB3 H N N 523 TRP HD1 H N N 524 TRP HE1 H N N 525 TRP HE3 H N N 526 TRP HZ2 H N N 527 TRP HZ3 H N N 528 TRP HH2 H N N 529 TRP HXT H N N 530 TYR N N N N 531 TYR CA C N S 532 TYR C C N N 533 TYR O O N N 534 TYR CB C N N 535 TYR CG C Y N 536 TYR CD1 C Y N 537 TYR CD2 C Y N 538 TYR CE1 C Y N 539 TYR CE2 C Y N 540 TYR CZ C Y N 541 TYR OH O N N 542 TYR OXT O N N 543 TYR H H N N 544 TYR H2 H N N 545 TYR HA H N N 546 TYR HB2 H N N 547 TYR HB3 H N N 548 TYR HD1 H N N 549 TYR HD2 H N N 550 TYR HE1 H N N 551 TYR HE2 H N N 552 TYR HH H N N 553 TYR HXT H N N 554 VAL N N N N 555 VAL CA C N S 556 VAL C C N N 557 VAL O O N N 558 VAL CB C N N 559 VAL CG1 C N N 560 VAL CG2 C N N 561 VAL OXT O N N 562 VAL H H N N 563 VAL H2 H N N 564 VAL HA H N N 565 VAL HB H N N 566 VAL HG11 H N N 567 VAL HG12 H N N 568 VAL HG13 H N N 569 VAL HG21 H N N 570 VAL HG22 H N N 571 VAL HG23 H N N 572 VAL HXT H N N 573 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 AMP P O1P doub N N 13 AMP P O2P sing N N 14 AMP P O3P sing N N 15 AMP P "O5'" sing N N 16 AMP O2P HOP2 sing N N 17 AMP O3P HOP3 sing N N 18 AMP "O5'" "C5'" sing N N 19 AMP "C5'" "C4'" sing N N 20 AMP "C5'" "H5'1" sing N N 21 AMP "C5'" "H5'2" sing N N 22 AMP "C4'" "O4'" sing N N 23 AMP "C4'" "C3'" sing N N 24 AMP "C4'" "H4'" sing N N 25 AMP "O4'" "C1'" sing N N 26 AMP "C3'" "O3'" sing N N 27 AMP "C3'" "C2'" sing N N 28 AMP "C3'" "H3'" sing N N 29 AMP "O3'" "HO3'" sing N N 30 AMP "C2'" "O2'" sing N N 31 AMP "C2'" "C1'" sing N N 32 AMP "C2'" "H2'" sing N N 33 AMP "O2'" "HO2'" sing N N 34 AMP "C1'" N9 sing N N 35 AMP "C1'" "H1'" sing N N 36 AMP N9 C8 sing Y N 37 AMP N9 C4 sing Y N 38 AMP C8 N7 doub Y N 39 AMP C8 H8 sing N N 40 AMP N7 C5 sing Y N 41 AMP C5 C6 sing Y N 42 AMP C5 C4 doub Y N 43 AMP C6 N6 sing N N 44 AMP C6 N1 doub Y N 45 AMP N6 HN61 sing N N 46 AMP N6 HN62 sing N N 47 AMP N1 C2 sing Y N 48 AMP C2 N3 doub Y N 49 AMP C2 H2 sing N N 50 AMP N3 C4 sing Y N 51 ARG N CA sing N N 52 ARG N H sing N N 53 ARG N H2 sing N N 54 ARG CA C sing N N 55 ARG CA CB sing N N 56 ARG CA HA sing N N 57 ARG C O doub N N 58 ARG C OXT sing N N 59 ARG CB CG sing N N 60 ARG CB HB2 sing N N 61 ARG CB HB3 sing N N 62 ARG CG CD sing N N 63 ARG CG HG2 sing N N 64 ARG CG HG3 sing N N 65 ARG CD NE sing N N 66 ARG CD HD2 sing N N 67 ARG CD HD3 sing N N 68 ARG NE CZ sing N N 69 ARG NE HE sing N N 70 ARG CZ NH1 sing N N 71 ARG CZ NH2 doub N N 72 ARG NH1 HH11 sing N N 73 ARG NH1 HH12 sing N N 74 ARG NH2 HH21 sing N N 75 ARG NH2 HH22 sing N N 76 ARG OXT HXT sing N N 77 ASN N CA sing N N 78 ASN N H sing N N 79 ASN N H2 sing N N 80 ASN CA C sing N N 81 ASN CA CB sing N N 82 ASN CA HA sing N N 83 ASN C O doub N N 84 ASN C OXT sing N N 85 ASN CB CG sing N N 86 ASN CB HB2 sing N N 87 ASN CB HB3 sing N N 88 ASN CG OD1 doub N N 89 ASN CG ND2 sing N N 90 ASN ND2 HD21 sing N N 91 ASN ND2 HD22 sing N N 92 ASN OXT HXT sing N N 93 ASP N CA sing N N 94 ASP N H sing N N 95 ASP N H2 sing N N 96 ASP CA C sing N N 97 ASP CA CB sing N N 98 ASP CA HA sing N N 99 ASP C O doub N N 100 ASP C OXT sing N N 101 ASP CB CG sing N N 102 ASP CB HB2 sing N N 103 ASP CB HB3 sing N N 104 ASP CG OD1 doub N N 105 ASP CG OD2 sing N N 106 ASP OD2 HD2 sing N N 107 ASP OXT HXT sing N N 108 CYS N CA sing N N 109 CYS N H sing N N 110 CYS N H2 sing N N 111 CYS CA C sing N N 112 CYS CA CB sing N N 113 CYS CA HA sing N N 114 CYS C O doub N N 115 CYS C OXT sing N N 116 CYS CB SG sing N N 117 CYS CB HB2 sing N N 118 CYS CB HB3 sing N N 119 CYS SG HG sing N N 120 CYS OXT HXT sing N N 121 DA OP3 P sing N N 122 DA OP3 HOP3 sing N N 123 DA P OP1 doub N N 124 DA P OP2 sing N N 125 DA P "O5'" sing N N 126 DA OP2 HOP2 sing N N 127 DA "O5'" "C5'" sing N N 128 DA "C5'" "C4'" sing N N 129 DA "C5'" "H5'" sing N N 130 DA "C5'" "H5''" sing N N 131 DA "C4'" "O4'" sing N N 132 DA "C4'" "C3'" sing N N 133 DA "C4'" "H4'" sing N N 134 DA "O4'" "C1'" sing N N 135 DA "C3'" "O3'" sing N N 136 DA "C3'" "C2'" sing N N 137 DA "C3'" "H3'" sing N N 138 DA "O3'" "HO3'" sing N N 139 DA "C2'" "C1'" sing N N 140 DA "C2'" "H2'" sing N N 141 DA "C2'" "H2''" sing N N 142 DA "C1'" N9 sing N N 143 DA "C1'" "H1'" sing N N 144 DA N9 C8 sing Y N 145 DA N9 C4 sing Y N 146 DA C8 N7 doub Y N 147 DA C8 H8 sing N N 148 DA N7 C5 sing Y N 149 DA C5 C6 sing Y N 150 DA C5 C4 doub Y N 151 DA C6 N6 sing N N 152 DA C6 N1 doub Y N 153 DA N6 H61 sing N N 154 DA N6 H62 sing N N 155 DA N1 C2 sing Y N 156 DA C2 N3 doub Y N 157 DA C2 H2 sing N N 158 DA N3 C4 sing Y N 159 DC OP3 P sing N N 160 DC OP3 HOP3 sing N N 161 DC P OP1 doub N N 162 DC P OP2 sing N N 163 DC P "O5'" sing N N 164 DC OP2 HOP2 sing N N 165 DC "O5'" "C5'" sing N N 166 DC "C5'" "C4'" sing N N 167 DC "C5'" "H5'" sing N N 168 DC "C5'" "H5''" sing N N 169 DC "C4'" "O4'" sing N N 170 DC "C4'" "C3'" sing N N 171 DC "C4'" "H4'" sing N N 172 DC "O4'" "C1'" sing N N 173 DC "C3'" "O3'" sing N N 174 DC "C3'" "C2'" sing N N 175 DC "C3'" "H3'" sing N N 176 DC "O3'" "HO3'" sing N N 177 DC "C2'" "C1'" sing N N 178 DC "C2'" "H2'" sing N N 179 DC "C2'" "H2''" sing N N 180 DC "C1'" N1 sing N N 181 DC "C1'" "H1'" sing N N 182 DC N1 C2 sing N N 183 DC N1 C6 sing N N 184 DC C2 O2 doub N N 185 DC C2 N3 sing N N 186 DC N3 C4 doub N N 187 DC C4 N4 sing N N 188 DC C4 C5 sing N N 189 DC N4 H41 sing N N 190 DC N4 H42 sing N N 191 DC C5 C6 doub N N 192 DC C5 H5 sing N N 193 DC C6 H6 sing N N 194 DG OP3 P sing N N 195 DG OP3 HOP3 sing N N 196 DG P OP1 doub N N 197 DG P OP2 sing N N 198 DG P "O5'" sing N N 199 DG OP2 HOP2 sing N N 200 DG "O5'" "C5'" sing N N 201 DG "C5'" "C4'" sing N N 202 DG "C5'" "H5'" sing N N 203 DG "C5'" "H5''" sing N N 204 DG "C4'" "O4'" sing N N 205 DG "C4'" "C3'" sing N N 206 DG "C4'" "H4'" sing N N 207 DG "O4'" "C1'" sing N N 208 DG "C3'" "O3'" sing N N 209 DG "C3'" "C2'" sing N N 210 DG "C3'" "H3'" sing N N 211 DG "O3'" "HO3'" sing N N 212 DG "C2'" "C1'" sing N N 213 DG "C2'" "H2'" sing N N 214 DG "C2'" "H2''" sing N N 215 DG "C1'" N9 sing N N 216 DG "C1'" "H1'" sing N N 217 DG N9 C8 sing Y N 218 DG N9 C4 sing Y N 219 DG C8 N7 doub Y N 220 DG C8 H8 sing N N 221 DG N7 C5 sing Y N 222 DG C5 C6 sing N N 223 DG C5 C4 doub Y N 224 DG C6 O6 doub N N 225 DG C6 N1 sing N N 226 DG N1 C2 sing N N 227 DG N1 H1 sing N N 228 DG C2 N2 sing N N 229 DG C2 N3 doub N N 230 DG N2 H21 sing N N 231 DG N2 H22 sing N N 232 DG N3 C4 sing N N 233 DT OP3 P sing N N 234 DT OP3 HOP3 sing N N 235 DT P OP1 doub N N 236 DT P OP2 sing N N 237 DT P "O5'" sing N N 238 DT OP2 HOP2 sing N N 239 DT "O5'" "C5'" sing N N 240 DT "C5'" "C4'" sing N N 241 DT "C5'" "H5'" sing N N 242 DT "C5'" "H5''" sing N N 243 DT "C4'" "O4'" sing N N 244 DT "C4'" "C3'" sing N N 245 DT "C4'" "H4'" sing N N 246 DT "O4'" "C1'" sing N N 247 DT "C3'" "O3'" sing N N 248 DT "C3'" "C2'" sing N N 249 DT "C3'" "H3'" sing N N 250 DT "O3'" "HO3'" sing N N 251 DT "C2'" "C1'" sing N N 252 DT "C2'" "H2'" sing N N 253 DT "C2'" "H2''" sing N N 254 DT "C1'" N1 sing N N 255 DT "C1'" "H1'" sing N N 256 DT N1 C2 sing N N 257 DT N1 C6 sing N N 258 DT C2 O2 doub N N 259 DT C2 N3 sing N N 260 DT N3 C4 sing N N 261 DT N3 H3 sing N N 262 DT C4 O4 doub N N 263 DT C4 C5 sing N N 264 DT C5 C7 sing N N 265 DT C5 C6 doub N N 266 DT C7 H71 sing N N 267 DT C7 H72 sing N N 268 DT C7 H73 sing N N 269 DT C6 H6 sing N N 270 GLN N CA sing N N 271 GLN N H sing N N 272 GLN N H2 sing N N 273 GLN CA C sing N N 274 GLN CA CB sing N N 275 GLN CA HA sing N N 276 GLN C O doub N N 277 GLN C OXT sing N N 278 GLN CB CG sing N N 279 GLN CB HB2 sing N N 280 GLN CB HB3 sing N N 281 GLN CG CD sing N N 282 GLN CG HG2 sing N N 283 GLN CG HG3 sing N N 284 GLN CD OE1 doub N N 285 GLN CD NE2 sing N N 286 GLN NE2 HE21 sing N N 287 GLN NE2 HE22 sing N N 288 GLN OXT HXT sing N N 289 GLU N CA sing N N 290 GLU N H sing N N 291 GLU N H2 sing N N 292 GLU CA C sing N N 293 GLU CA CB sing N N 294 GLU CA HA sing N N 295 GLU C O doub N N 296 GLU C OXT sing N N 297 GLU CB CG sing N N 298 GLU CB HB2 sing N N 299 GLU CB HB3 sing N N 300 GLU CG CD sing N N 301 GLU CG HG2 sing N N 302 GLU CG HG3 sing N N 303 GLU CD OE1 doub N N 304 GLU CD OE2 sing N N 305 GLU OE2 HE2 sing N N 306 GLU OXT HXT sing N N 307 GLY N CA sing N N 308 GLY N H sing N N 309 GLY N H2 sing N N 310 GLY CA C sing N N 311 GLY CA HA2 sing N N 312 GLY CA HA3 sing N N 313 GLY C O doub N N 314 GLY C OXT sing N N 315 GLY OXT HXT sing N N 316 HIS N CA sing N N 317 HIS N H sing N N 318 HIS N H2 sing N N 319 HIS CA C sing N N 320 HIS CA CB sing N N 321 HIS CA HA sing N N 322 HIS C O doub N N 323 HIS C OXT sing N N 324 HIS CB CG sing N N 325 HIS CB HB2 sing N N 326 HIS CB HB3 sing N N 327 HIS CG ND1 sing Y N 328 HIS CG CD2 doub Y N 329 HIS ND1 CE1 doub Y N 330 HIS ND1 HD1 sing N N 331 HIS CD2 NE2 sing Y N 332 HIS CD2 HD2 sing N N 333 HIS CE1 NE2 sing Y N 334 HIS CE1 HE1 sing N N 335 HIS NE2 HE2 sing N N 336 HIS OXT HXT sing N N 337 HOH O H1 sing N N 338 HOH O H2 sing N N 339 ILE N CA sing N N 340 ILE N H sing N N 341 ILE N H2 sing N N 342 ILE CA C sing N N 343 ILE CA CB sing N N 344 ILE CA HA sing N N 345 ILE C O doub N N 346 ILE C OXT sing N N 347 ILE CB CG1 sing N N 348 ILE CB CG2 sing N N 349 ILE CB HB sing N N 350 ILE CG1 CD1 sing N N 351 ILE CG1 HG12 sing N N 352 ILE CG1 HG13 sing N N 353 ILE CG2 HG21 sing N N 354 ILE CG2 HG22 sing N N 355 ILE CG2 HG23 sing N N 356 ILE CD1 HD11 sing N N 357 ILE CD1 HD12 sing N N 358 ILE CD1 HD13 sing N N 359 ILE OXT HXT sing N N 360 LEU N CA sing N N 361 LEU N H sing N N 362 LEU N H2 sing N N 363 LEU CA C sing N N 364 LEU CA CB sing N N 365 LEU CA HA sing N N 366 LEU C O doub N N 367 LEU C OXT sing N N 368 LEU CB CG sing N N 369 LEU CB HB2 sing N N 370 LEU CB HB3 sing N N 371 LEU CG CD1 sing N N 372 LEU CG CD2 sing N N 373 LEU CG HG sing N N 374 LEU CD1 HD11 sing N N 375 LEU CD1 HD12 sing N N 376 LEU CD1 HD13 sing N N 377 LEU CD2 HD21 sing N N 378 LEU CD2 HD22 sing N N 379 LEU CD2 HD23 sing N N 380 LEU OXT HXT sing N N 381 LYS N CA sing N N 382 LYS N H sing N N 383 LYS N H2 sing N N 384 LYS CA C sing N N 385 LYS CA CB sing N N 386 LYS CA HA sing N N 387 LYS C O doub N N 388 LYS C OXT sing N N 389 LYS CB CG sing N N 390 LYS CB HB2 sing N N 391 LYS CB HB3 sing N N 392 LYS CG CD sing N N 393 LYS CG HG2 sing N N 394 LYS CG HG3 sing N N 395 LYS CD CE sing N N 396 LYS CD HD2 sing N N 397 LYS CD HD3 sing N N 398 LYS CE NZ sing N N 399 LYS CE HE2 sing N N 400 LYS CE HE3 sing N N 401 LYS NZ HZ1 sing N N 402 LYS NZ HZ2 sing N N 403 LYS NZ HZ3 sing N N 404 LYS OXT HXT sing N N 405 MET N CA sing N N 406 MET N H sing N N 407 MET N H2 sing N N 408 MET CA C sing N N 409 MET CA CB sing N N 410 MET CA HA sing N N 411 MET C O doub N N 412 MET C OXT sing N N 413 MET CB CG sing N N 414 MET CB HB2 sing N N 415 MET CB HB3 sing N N 416 MET CG SD sing N N 417 MET CG HG2 sing N N 418 MET CG HG3 sing N N 419 MET SD CE sing N N 420 MET CE HE1 sing N N 421 MET CE HE2 sing N N 422 MET CE HE3 sing N N 423 MET OXT HXT sing N N 424 PHE N CA sing N N 425 PHE N H sing N N 426 PHE N H2 sing N N 427 PHE CA C sing N N 428 PHE CA CB sing N N 429 PHE CA HA sing N N 430 PHE C O doub N N 431 PHE C OXT sing N N 432 PHE CB CG sing N N 433 PHE CB HB2 sing N N 434 PHE CB HB3 sing N N 435 PHE CG CD1 doub Y N 436 PHE CG CD2 sing Y N 437 PHE CD1 CE1 sing Y N 438 PHE CD1 HD1 sing N N 439 PHE CD2 CE2 doub Y N 440 PHE CD2 HD2 sing N N 441 PHE CE1 CZ doub Y N 442 PHE CE1 HE1 sing N N 443 PHE CE2 CZ sing Y N 444 PHE CE2 HE2 sing N N 445 PHE CZ HZ sing N N 446 PHE OXT HXT sing N N 447 PRO N CA sing N N 448 PRO N CD sing N N 449 PRO N H sing N N 450 PRO CA C sing N N 451 PRO CA CB sing N N 452 PRO CA HA sing N N 453 PRO C O doub N N 454 PRO C OXT sing N N 455 PRO CB CG sing N N 456 PRO CB HB2 sing N N 457 PRO CB HB3 sing N N 458 PRO CG CD sing N N 459 PRO CG HG2 sing N N 460 PRO CG HG3 sing N N 461 PRO CD HD2 sing N N 462 PRO CD HD3 sing N N 463 PRO OXT HXT sing N N 464 SCN S C sing N N 465 SCN C N trip N N 466 SER N CA sing N N 467 SER N H sing N N 468 SER N H2 sing N N 469 SER CA C sing N N 470 SER CA CB sing N N 471 SER CA HA sing N N 472 SER C O doub N N 473 SER C OXT sing N N 474 SER CB OG sing N N 475 SER CB HB2 sing N N 476 SER CB HB3 sing N N 477 SER OG HG sing N N 478 SER OXT HXT sing N N 479 THR N CA sing N N 480 THR N H sing N N 481 THR N H2 sing N N 482 THR CA C sing N N 483 THR CA CB sing N N 484 THR CA HA sing N N 485 THR C O doub N N 486 THR C OXT sing N N 487 THR CB OG1 sing N N 488 THR CB CG2 sing N N 489 THR CB HB sing N N 490 THR OG1 HG1 sing N N 491 THR CG2 HG21 sing N N 492 THR CG2 HG22 sing N N 493 THR CG2 HG23 sing N N 494 THR OXT HXT sing N N 495 TRP N CA sing N N 496 TRP N H sing N N 497 TRP N H2 sing N N 498 TRP CA C sing N N 499 TRP CA CB sing N N 500 TRP CA HA sing N N 501 TRP C O doub N N 502 TRP C OXT sing N N 503 TRP CB CG sing N N 504 TRP CB HB2 sing N N 505 TRP CB HB3 sing N N 506 TRP CG CD1 doub Y N 507 TRP CG CD2 sing Y N 508 TRP CD1 NE1 sing Y N 509 TRP CD1 HD1 sing N N 510 TRP CD2 CE2 doub Y N 511 TRP CD2 CE3 sing Y N 512 TRP NE1 CE2 sing Y N 513 TRP NE1 HE1 sing N N 514 TRP CE2 CZ2 sing Y N 515 TRP CE3 CZ3 doub Y N 516 TRP CE3 HE3 sing N N 517 TRP CZ2 CH2 doub Y N 518 TRP CZ2 HZ2 sing N N 519 TRP CZ3 CH2 sing Y N 520 TRP CZ3 HZ3 sing N N 521 TRP CH2 HH2 sing N N 522 TRP OXT HXT sing N N 523 TYR N CA sing N N 524 TYR N H sing N N 525 TYR N H2 sing N N 526 TYR CA C sing N N 527 TYR CA CB sing N N 528 TYR CA HA sing N N 529 TYR C O doub N N 530 TYR C OXT sing N N 531 TYR CB CG sing N N 532 TYR CB HB2 sing N N 533 TYR CB HB3 sing N N 534 TYR CG CD1 doub Y N 535 TYR CG CD2 sing Y N 536 TYR CD1 CE1 sing Y N 537 TYR CD1 HD1 sing N N 538 TYR CD2 CE2 doub Y N 539 TYR CD2 HD2 sing N N 540 TYR CE1 CZ doub Y N 541 TYR CE1 HE1 sing N N 542 TYR CE2 CZ sing Y N 543 TYR CE2 HE2 sing N N 544 TYR CZ OH sing N N 545 TYR OH HH sing N N 546 TYR OXT HXT sing N N 547 VAL N CA sing N N 548 VAL N H sing N N 549 VAL N H2 sing N N 550 VAL CA C sing N N 551 VAL CA CB sing N N 552 VAL CA HA sing N N 553 VAL C O doub N N 554 VAL C OXT sing N N 555 VAL CB CG1 sing N N 556 VAL CB CG2 sing N N 557 VAL CB HB sing N N 558 VAL CG1 HG11 sing N N 559 VAL CG1 HG12 sing N N 560 VAL CG1 HG13 sing N N 561 VAL CG2 HG21 sing N N 562 VAL CG2 HG22 sing N N 563 VAL CG2 HG23 sing N N 564 VAL OXT HXT sing N N 565 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 8U6X 'double helix' 8U6X 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DC 4 1_555 C DG 18 1_555 -0.167 1.101 1.762 -19.581 -11.744 31.738 1 B_DC1:DG6_C B 1 ? C 6 ? ? 1 1 B DG 5 1_555 C DC 17 1_555 -2.370 -0.472 -0.036 -13.730 -20.745 11.849 2 B_DG2:DC5_C B 2 ? C 5 ? ? 1 1 B DA 6 1_555 C DT 16 1_555 -0.032 -0.213 -0.217 -8.558 -15.376 -1.533 3 B_DA3:DT4_C B 3 ? C 4 ? 20 1 1 B DT 7 1_555 C DA 15 1_555 -0.297 -0.325 0.394 -5.771 -19.097 2.067 4 B_DT4:DA3_C B 4 ? C 3 ? 20 1 1 B DA 8 1_555 C DT 14 1_555 0.169 -0.220 0.233 -4.885 -5.593 -4.442 5 B_DA5:DT2_C B 5 ? C 2 ? 20 1 1 B DG 9 1_555 C DC 13 1_555 -0.141 -0.411 1.066 4.279 -8.581 7.008 6 B_DG6:DC1_C B 6 ? C 1 ? 22 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DC 4 1_555 C DG 18 1_555 B DG 5 1_555 C DC 17 1_555 -0.730 -1.051 2.907 11.014 1.630 33.324 -1.951 2.613 2.495 2.749 -18.574 35.084 1 BB_DC1DG2:DC5DG6_CC B 1 ? C 6 ? B 2 ? C 5 ? 1 B DG 5 1_555 C DC 17 1_555 B DA 6 1_555 C DT 16 1_555 -0.924 0.500 3.406 -6.271 4.858 41.839 0.163 0.595 3.537 6.730 8.687 42.551 2 BB_DG2DA3:DT4DC5_CC B 2 ? C 5 ? B 3 ? C 4 ? 1 B DA 6 1_555 C DT 16 1_555 B DT 7 1_555 C DA 15 1_555 0.359 -0.692 3.186 -4.654 3.439 33.540 -1.708 -1.324 3.027 5.904 7.991 34.021 3 BB_DA3DT4:DA3DT4_CC B 3 ? C 4 ? B 4 ? C 3 ? 1 B DT 7 1_555 C DA 15 1_555 B DA 8 1_555 C DT 14 1_555 -0.506 0.025 3.235 0.694 1.472 37.645 -0.150 0.873 3.224 2.280 -1.075 37.679 4 BB_DT4DA5:DT2DA3_CC B 4 ? C 3 ? B 5 ? C 2 ? 1 B DA 8 1_555 C DT 14 1_555 B DG 9 1_555 C DC 13 1_555 0.333 -1.074 3.022 -6.931 1.282 31.378 -2.148 -1.728 2.840 2.334 12.617 32.141 5 BB_DA5DG6:DC1DT2_CC B 5 ? C 2 ? B 6 ? C 1 ? # _pdbx_audit_support.funding_organization 'Health Research Council (HRC)' _pdbx_audit_support.country 'New Zealand' _pdbx_audit_support.grant_number 21/754 _pdbx_audit_support.ordinal 1 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'in silico model' _pdbx_initial_refinement_model.source_name AlphaFold _pdbx_initial_refinement_model.accession_code ? _pdbx_initial_refinement_model.details ? # _space_group.name_H-M_alt 'P 21 21 2' _space_group.name_Hall 'P 2 2ab' _space_group.IT_number 18 _space_group.crystal_system orthorhombic _space_group.id 1 # _atom_sites.entry_id 8U6X _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 0.025382 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.005964 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.019547 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.scat_dispersion_real _atom_type.scat_dispersion_imag _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c _atom_type.scat_source _atom_type.scat_dispersion_source C ? ? 3.54356 2.42580 ? ? 25.62398 1.50364 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? H ? ? 0.51345 0.48472 ? ? 24.73122 6.32584 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? N ? ? 4.01032 2.96436 ? ? 19.97189 1.75589 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O ? ? 4.49882 3.47563 ? ? 15.80542 1.70748 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O1- ? ? 5.12366 3.84317 ? ? 3.49406 27.47979 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? P ? ? 9.51135 5.44231 ? ? 1.42069 35.72801 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? S ? ? 9.55732 6.39887 ? ? 1.23737 29.19336 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? # loop_